Wall clock time and date at job start Tue Mar 31 2020 06:20:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.37441 * 123.36031 * 2 1 4 4 C 1.33855 * 115.10985 * 179.80559 * 3 2 1 5 5 S 1.70608 * 110.96905 * 0.44646 * 4 3 2 6 6 C 1.36773 * 123.36434 * 180.29227 * 2 1 3 7 7 C 1.46457 * 125.46060 * 359.95577 * 6 2 1 8 8 O 1.21747 * 120.00088 * 352.66689 * 7 6 2 9 9 N 1.34777 * 120.00010 * 172.66267 * 7 6 2 10 10 C 1.36879 * 119.99634 * 4.11077 * 9 7 6 11 11 H 1.07996 * 120.00382 * 307.99708 * 10 9 7 12 12 C 1.39011 * 120.00040 * 127.99669 * 10 9 7 13 13 N 1.31403 * 119.99559 * 4.02401 * 12 10 9 14 14 Si 1.86798 * 120.00246 * 184.02195 * 12 10 9 15 15 H 1.48503 * 109.46780 * 60.00289 * 14 12 10 16 16 H 1.48507 * 109.47159 * 179.97438 * 14 12 10 17 17 H 1.48496 * 109.47065 * 300.00266 * 14 12 10 18 18 C 1.46496 * 119.99831 * 184.10662 * 9 7 6 19 19 C 1.52995 * 109.47226 * 84.67961 * 18 9 7 20 20 C 1.50697 * 109.47578 * 180.02562 * 19 18 9 21 21 O 1.20825 * 119.99719 * 359.97438 * 20 19 18 22 22 O 1.34235 * 120.00467 * 179.97438 * 20 19 18 23 23 H 1.08993 * 109.47602 * 269.70764 * 1 2 3 24 24 H 1.09001 * 109.47445 * 29.71387 * 1 2 3 25 25 H 1.09012 * 109.47188 * 149.70699 * 1 2 3 26 26 H 1.08000 * 122.44443 * 0.02562 * 3 2 1 27 27 H 1.08000 * 124.51111 * 180.19698 * 4 3 2 28 28 H 0.97005 * 119.99604 * 180.02562 * 13 12 10 29 29 H 1.08998 * 109.46996 * 204.67852 * 18 9 7 30 30 H 1.08999 * 109.47527 * 324.67372 * 18 9 7 31 31 H 1.09005 * 109.47007 * 299.99466 * 19 18 9 32 32 H 1.08999 * 109.47348 * 59.99302 * 19 18 9 33 33 H 0.96690 * 116.99855 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2627 1.1479 0.0000 4 6 3.5874 0.9559 0.0041 5 16 3.9630 -0.7083 -0.0041 6 6 2.2591 -1.1423 -0.0058 7 6 1.7301 -2.5080 -0.0119 8 8 0.5352 -2.6985 0.1226 9 7 2.5661 -3.5538 -0.1664 10 6 3.9173 -3.3457 -0.2332 11 1 4.3191 -2.6267 -0.9317 12 6 4.7724 -4.0600 0.5981 13 7 4.2918 -4.9907 1.3915 14 14 6.6047 -3.6967 0.5873 15 1 6.8307 -2.2802 0.9719 16 1 7.2918 -4.5879 1.5563 17 1 7.1481 -3.9326 -0.7744 18 6 2.0285 -4.9132 -0.2627 19 6 1.6254 -5.2008 -1.7103 20 6 1.0719 -6.5989 -1.8094 21 8 1.0068 -7.2942 -0.8233 22 8 0.6510 -7.0720 -2.9930 23 1 -0.3634 -0.0052 1.0276 24 1 -0.3634 0.8925 -0.5094 25 1 -0.3634 -0.8874 -0.5184 26 1 1.8201 2.1331 0.0004 27 1 4.3207 1.7488 0.0078 28 1 4.8885 -5.4888 1.9718 29 1 2.7892 -5.6278 0.0515 30 1 1.1550 -5.0051 0.3828 31 1 0.8646 -4.4862 -2.0245 32 1 2.4989 -5.1089 -2.3558 33 1 0.3042 -7.9744 -3.0068 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600607909.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:48 Heat of formation + Delta-G solvation = -100.838595 kcal Electronic energy + Delta-G solvation = -20261.626696 eV Core-core repulsion = 16992.954816 eV Total energy + Delta-G solvation = -3268.671879 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.85308 -38.82305 -37.10215 -35.79270 -34.93098 -32.22957 -30.89965 -29.98130 -27.37437 -25.46758 -23.99319 -22.53043 -20.89656 -19.73885 -18.55276 -17.70729 -17.31495 -16.26881 -16.06498 -15.61258 -15.17723 -14.57432 -14.41041 -14.07642 -13.81326 -13.07290 -12.79383 -12.62701 -12.55686 -12.29749 -11.85809 -11.67277 -11.43387 -11.33550 -11.27241 -11.16854 -11.14739 -10.83956 -10.56004 -10.16936 -10.13554 -9.80468 -9.06823 -8.68460 -7.97479 -7.69453 -7.43754 -6.60636 -4.54575 1.43983 2.53173 2.65195 2.94347 3.06610 3.07732 3.10804 3.16527 3.41853 3.88973 4.29890 4.70629 4.76447 5.54329 5.57027 5.76103 5.86682 5.92211 6.01020 6.07212 6.26927 6.30756 6.32299 6.62016 6.71100 6.79303 6.83920 7.06620 7.14069 7.23875 7.35065 7.81052 8.07339 8.28996 8.76820 9.25131 9.69277 10.37714 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.013726 B = 0.008006 C = 0.005489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2039.484633 B = 3496.579834 C = 5099.494852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.069 4.069 3 C -0.153 4.153 4 C -0.321 4.321 5 S 0.281 5.719 6 C -0.228 4.228 7 C 0.550 3.450 8 O -0.584 6.584 9 N -0.439 5.439 10 C -0.354 4.354 11 H 0.099 0.901 12 C 0.066 3.934 13 N -0.840 5.840 14 Si 0.903 3.097 15 H -0.257 1.257 16 H -0.277 1.277 17 H -0.265 1.265 18 C 0.133 3.867 19 C -0.127 4.127 20 C 0.484 3.516 21 O -0.513 6.513 22 O -0.525 6.525 23 H 0.062 0.938 24 H 0.049 0.951 25 H 0.085 0.915 26 H 0.119 0.881 27 H 0.145 0.855 28 H 0.279 0.721 29 H 0.117 0.883 30 H 0.066 0.934 31 H 0.097 0.903 32 H 0.104 0.896 33 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.259 3.526 -5.341 6.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.084 4.084 3 C -0.185 4.185 4 C -0.457 4.457 5 S 0.556 5.444 6 C -0.349 4.349 7 C 0.340 3.660 8 O -0.471 6.471 9 N -0.157 5.157 10 C -0.487 4.487 11 H 0.116 0.884 12 C -0.146 4.146 13 N -0.472 5.472 14 Si 0.727 3.273 15 H -0.182 1.182 16 H -0.202 1.202 17 H -0.189 1.189 18 C 0.010 3.990 19 C -0.166 4.166 20 C 0.326 3.674 21 O -0.401 6.401 22 O -0.336 6.336 23 H 0.081 0.919 24 H 0.068 0.932 25 H 0.104 0.896 26 H 0.137 0.863 27 H 0.163 0.837 28 H 0.090 0.910 29 H 0.134 0.866 30 H 0.084 0.916 31 H 0.115 0.885 32 H 0.122 0.878 33 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges 1.289 2.738 -4.814 5.686 hybrid contribution -0.517 0.543 0.066 0.752 sum 0.772 3.281 -4.748 5.823 Atomic orbital electron populations 1.20497 0.89968 1.02319 1.02009 1.19295 0.96968 0.90916 1.01212 1.19594 0.92885 0.98330 1.07654 1.26398 1.00442 1.08698 1.10208 1.84436 1.04353 0.91027 1.64568 1.24475 0.97279 0.97377 1.15787 1.17397 0.85963 0.83531 0.79107 1.90640 1.15645 1.85503 1.55265 1.43102 1.05653 1.03832 1.63126 1.19236 0.81211 1.25920 1.22364 0.88419 1.25690 1.00752 0.94665 0.93453 1.69748 1.36992 1.19245 1.21232 0.86332 0.81863 0.79915 0.79160 1.18179 1.20189 1.18935 1.21226 1.00774 0.86576 0.90470 1.21908 1.02313 0.88883 1.03511 1.23750 0.73708 0.90195 0.79762 1.90708 1.52019 1.59625 1.37746 1.84590 1.75486 1.36745 1.36828 0.91893 0.93162 0.89630 0.86292 0.83688 0.91035 0.86552 0.91598 0.88452 0.87791 0.74122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.60 9.46 36.00 0.34 -1.26 16 2 C -0.07 -1.36 5.91 -105.45 -0.62 -1.98 16 3 C -0.15 -2.68 9.97 -41.41 -0.41 -3.09 16 4 C -0.32 -5.47 10.92 29.19 0.32 -5.15 16 5 S 0.28 5.43 18.41 -107.50 -1.98 3.45 16 6 C -0.23 -5.00 6.30 -36.80 -0.23 -5.24 16 7 C 0.55 13.38 7.53 -12.95 -0.10 13.28 16 8 O -0.58 -14.98 14.00 5.15 0.07 -14.91 16 9 N -0.44 -10.53 2.47 -116.38 -0.29 -10.82 16 10 C -0.35 -8.23 6.71 -15.01 -0.10 -8.33 16 11 H 0.10 2.16 5.51 -34.01 -0.19 1.98 16 12 C 0.07 1.55 5.34 -17.45 -0.09 1.45 16 13 N -0.84 -20.99 11.26 55.50 0.62 -20.36 16 14 Si 0.90 17.75 29.56 -169.99 -5.02 12.73 16 15 H -0.26 -4.87 7.11 56.52 0.40 -4.46 16 16 H -0.28 -5.48 7.11 56.52 0.40 -5.08 16 17 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 18 C 0.13 3.08 4.16 -4.05 -0.02 3.06 16 19 C -0.13 -2.42 6.10 -27.89 -0.17 -2.59 16 20 C 0.48 8.64 8.33 36.00 0.30 8.94 16 21 O -0.51 -10.72 16.74 -18.75 -0.31 -11.03 16 22 O -0.52 -7.29 13.42 -39.27 -0.53 -7.82 16 23 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 24 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.08 1.69 6.21 -51.92 -0.32 1.37 16 26 H 0.12 1.77 8.06 -52.49 -0.42 1.35 16 27 H 0.15 2.06 8.06 -52.49 -0.42 1.64 16 28 H 0.28 6.59 8.31 -40.82 -0.34 6.25 16 29 H 0.12 2.90 5.80 -51.93 -0.30 2.60 16 30 H 0.07 1.65 7.49 -51.93 -0.39 1.26 16 31 H 0.10 1.83 8.14 -51.93 -0.42 1.41 16 32 H 0.10 1.85 8.14 -51.93 -0.42 1.43 16 33 H 0.40 3.64 9.10 45.56 0.41 4.06 16 LS Contribution 299.00 15.07 4.51 4.51 Total: -1.00 -28.85 299.00 -6.17 -35.02 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: -2.46 Total: 10.14 kcal Atomic # 6 Polarization: -0.11 SS G_CDS: -0.79 Total: -0.90 kcal Atomic # 7 Polarization: -31.52 SS G_CDS: 0.34 Total: -31.19 kcal Atomic # 8 Polarization: -32.99 SS G_CDS: -0.77 Total: -33.76 kcal Atomic # 14 Polarization: 17.75 SS G_CDS: -5.02 Total: 12.73 kcal Atomic # 16 Polarization: 5.43 SS G_CDS: -1.98 Total: 3.45 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -28.85 -6.17 -35.02 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600607909.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.817 kcal (2) G-P(sol) polarization free energy of solvation -28.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds