Wall clock time and date at job start Tue Mar 31 2020 06:20:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.37441 * 123.36031 * 2 1 4 4 C 1.33855 * 115.10985 * 179.80559 * 3 2 1 5 5 S 1.70608 * 110.96905 * 0.44646 * 4 3 2 6 6 C 1.36773 * 123.36434 * 180.29227 * 2 1 3 7 7 C 1.46457 * 125.46060 * 359.95577 * 6 2 1 8 8 O 1.21747 * 120.00088 * 352.66689 * 7 6 2 9 9 N 1.34777 * 120.00010 * 172.66267 * 7 6 2 10 10 C 1.36879 * 119.99634 * 4.11077 * 9 7 6 11 11 H 1.07996 * 120.00382 * 307.99708 * 10 9 7 12 12 C 1.39011 * 120.00040 * 127.99669 * 10 9 7 13 13 N 1.31403 * 119.99559 * 4.02401 * 12 10 9 14 14 Si 1.86798 * 120.00246 * 184.02195 * 12 10 9 15 15 H 1.48503 * 109.46780 * 60.00289 * 14 12 10 16 16 H 1.48507 * 109.47159 * 179.97438 * 14 12 10 17 17 H 1.48496 * 109.47065 * 300.00266 * 14 12 10 18 18 C 1.46496 * 119.99831 * 184.10662 * 9 7 6 19 19 C 1.52995 * 109.47226 * 84.67961 * 18 9 7 20 20 C 1.50697 * 109.47578 * 180.02562 * 19 18 9 21 21 O 1.20825 * 119.99719 * 359.97438 * 20 19 18 22 22 O 1.34235 * 120.00467 * 179.97438 * 20 19 18 23 23 H 1.08993 * 109.47602 * 269.70764 * 1 2 3 24 24 H 1.09001 * 109.47445 * 29.71387 * 1 2 3 25 25 H 1.09012 * 109.47188 * 149.70699 * 1 2 3 26 26 H 1.08000 * 122.44443 * 0.02562 * 3 2 1 27 27 H 1.08000 * 124.51111 * 180.19698 * 4 3 2 28 28 H 0.97005 * 119.99604 * 180.02562 * 13 12 10 29 29 H 1.08998 * 109.46996 * 204.67852 * 18 9 7 30 30 H 1.08999 * 109.47527 * 324.67372 * 18 9 7 31 31 H 1.09005 * 109.47007 * 299.99466 * 19 18 9 32 32 H 1.08999 * 109.47348 * 59.99302 * 19 18 9 33 33 H 0.96690 * 116.99855 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2627 1.1479 0.0000 4 6 3.5874 0.9559 0.0041 5 16 3.9630 -0.7083 -0.0041 6 6 2.2591 -1.1423 -0.0058 7 6 1.7301 -2.5080 -0.0119 8 8 0.5352 -2.6985 0.1226 9 7 2.5661 -3.5538 -0.1664 10 6 3.9173 -3.3457 -0.2332 11 1 4.3191 -2.6267 -0.9317 12 6 4.7724 -4.0600 0.5981 13 7 4.2918 -4.9907 1.3915 14 14 6.6047 -3.6967 0.5873 15 1 6.8307 -2.2802 0.9719 16 1 7.2918 -4.5879 1.5563 17 1 7.1481 -3.9326 -0.7744 18 6 2.0285 -4.9132 -0.2627 19 6 1.6254 -5.2008 -1.7103 20 6 1.0719 -6.5989 -1.8094 21 8 1.0068 -7.2942 -0.8233 22 8 0.6510 -7.0720 -2.9930 23 1 -0.3634 -0.0052 1.0276 24 1 -0.3634 0.8925 -0.5094 25 1 -0.3634 -0.8874 -0.5184 26 1 1.8201 2.1331 0.0004 27 1 4.3207 1.7488 0.0078 28 1 4.8885 -5.4888 1.9718 29 1 2.7892 -5.6278 0.0515 30 1 1.1550 -5.0051 0.3828 31 1 0.8646 -4.4862 -2.0245 32 1 2.4989 -5.1089 -2.3558 33 1 0.3042 -7.9744 -3.0068 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001600607909.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:48 Heat of formation + Delta-G solvation = -119.017901 kcal Electronic energy + Delta-G solvation = -20262.415009 eV Core-core repulsion = 16992.954816 eV Total energy + Delta-G solvation = -3269.460193 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.34408 -40.53300 -38.62646 -37.17999 -36.71737 -33.98599 -32.60636 -31.42884 -28.92951 -27.24505 -25.63558 -23.98543 -22.39981 -21.45225 -20.22582 -19.13589 -18.84422 -17.88608 -17.68895 -17.11496 -16.77949 -16.19002 -16.01996 -15.78032 -15.33635 -14.56993 -14.38779 -14.27907 -14.02631 -13.74905 -13.57535 -13.24556 -12.93443 -12.91684 -12.86647 -12.71709 -12.56165 -12.33578 -12.13981 -11.92971 -11.66311 -11.34067 -10.77043 -10.50220 -9.61558 -9.32142 -9.01024 -8.36949 -6.37150 -0.08947 1.00947 1.19239 1.43074 1.47619 1.56275 1.60806 1.70286 2.01984 2.27132 2.54961 3.00609 3.03053 3.99070 4.11696 4.21622 4.34861 4.48412 4.54747 4.67647 4.74148 4.82535 4.89154 4.99543 5.21247 5.27551 5.29204 5.43607 5.59593 5.69268 5.78693 6.02709 6.27635 6.97830 7.00769 7.44173 7.89027 8.62829 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.013726 B = 0.008006 C = 0.005489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2039.484633 B = 3496.579834 C = 5099.494852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.064 4.064 3 C -0.159 4.159 4 C -0.293 4.293 5 S 0.273 5.727 6 C -0.279 4.279 7 C 0.537 3.463 8 O -0.614 6.614 9 N -0.448 5.448 10 C -0.362 4.362 11 H 0.111 0.889 12 C 0.027 3.973 13 N -0.882 5.882 14 Si 0.956 3.044 15 H -0.242 1.242 16 H -0.282 1.282 17 H -0.252 1.252 18 C 0.139 3.861 19 C -0.118 4.118 20 C 0.496 3.504 21 O -0.549 6.549 22 O -0.507 6.507 23 H 0.063 0.937 24 H 0.086 0.914 25 H 0.060 0.940 26 H 0.155 0.845 27 H 0.184 0.816 28 H 0.277 0.723 29 H 0.096 0.904 30 H 0.032 0.968 31 H 0.099 0.901 32 H 0.119 0.881 33 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.403 5.963 -6.618 9.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.080 4.080 3 C -0.189 4.189 4 C -0.430 4.430 5 S 0.547 5.453 6 C -0.399 4.399 7 C 0.329 3.671 8 O -0.503 6.503 9 N -0.166 5.166 10 C -0.494 4.494 11 H 0.128 0.872 12 C -0.181 4.181 13 N -0.516 5.516 14 Si 0.777 3.223 15 H -0.165 1.165 16 H -0.208 1.208 17 H -0.176 1.176 18 C 0.015 3.985 19 C -0.157 4.157 20 C 0.340 3.660 21 O -0.440 6.440 22 O -0.321 6.321 23 H 0.081 0.919 24 H 0.104 0.896 25 H 0.078 0.922 26 H 0.173 0.827 27 H 0.201 0.799 28 H 0.087 0.913 29 H 0.114 0.886 30 H 0.051 0.949 31 H 0.117 0.883 32 H 0.137 0.863 33 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges 2.431 5.145 -6.138 8.370 hybrid contribution -0.963 -0.106 0.415 1.054 sum 1.468 5.039 -5.723 7.765 Atomic orbital electron populations 1.20500 0.89175 1.02843 1.02123 1.19751 0.97928 0.91183 0.99159 1.19876 0.92882 0.98942 1.07246 1.26640 1.01173 1.07650 1.07525 1.84166 1.03025 0.92948 1.65136 1.24432 0.99185 0.96660 1.19613 1.17846 0.85773 0.84771 0.78734 1.90597 1.16710 1.86259 1.56721 1.43303 1.06247 1.03899 1.63148 1.19572 0.80868 1.26327 1.22600 0.87225 1.26478 1.04687 0.94096 0.92805 1.69892 1.38381 1.20715 1.22613 0.85518 0.76858 0.80348 0.79578 1.16501 1.20756 1.17565 1.20974 0.98636 0.86365 0.92494 1.21651 1.03046 0.90080 1.00886 1.23325 0.73100 0.89440 0.80163 1.90707 1.53639 1.60400 1.39218 1.84503 1.74714 1.38709 1.34152 0.91854 0.89556 0.92152 0.82740 0.79882 0.91260 0.88556 0.94895 0.88278 0.86317 0.71157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.03 9.46 71.23 0.67 -2.36 16 2 C -0.06 -2.42 5.91 -20.40 -0.12 -2.54 16 3 C -0.16 -4.92 9.97 21.08 0.21 -4.71 16 4 C -0.29 -8.73 10.92 66.82 0.73 -8.00 16 5 S 0.27 10.05 18.41 -56.49 -1.04 9.01 16 6 C -0.28 -12.16 6.30 24.07 0.15 -12.00 16 7 C 0.54 27.02 7.53 86.38 0.65 27.68 16 8 O -0.61 -33.00 14.00 -4.50 -0.06 -33.07 16 9 N -0.45 -22.31 2.47 -640.31 -1.58 -23.89 16 10 C -0.36 -17.06 6.71 84.09 0.56 -16.50 16 11 H 0.11 4.82 5.51 -14.66 -0.08 4.74 16 12 C 0.03 1.26 5.34 84.94 0.45 1.72 16 13 N -0.88 -45.81 11.26 21.68 0.24 -45.56 16 14 Si 0.96 35.77 29.56 68.60 2.03 37.79 16 15 H -0.24 -8.34 7.11 99.48 0.71 -7.63 16 16 H -0.28 -10.72 7.11 99.48 0.71 -10.01 16 17 H -0.25 -8.83 7.11 99.48 0.71 -8.13 16 18 C 0.14 6.79 4.16 86.38 0.36 7.15 16 19 C -0.12 -4.59 6.10 29.85 0.18 -4.41 16 20 C 0.50 17.81 8.33 71.24 0.59 18.41 16 21 O -0.55 -23.56 16.74 21.97 0.37 -23.20 16 22 O -0.51 -13.27 13.42 -51.46 -0.69 -13.96 16 23 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 24 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 25 H 0.06 2.41 6.21 -2.38 -0.01 2.39 16 26 H 0.16 3.72 8.06 -2.91 -0.02 3.70 16 27 H 0.18 4.09 8.06 -2.91 -0.02 4.07 16 28 H 0.28 13.66 8.31 -92.70 -0.77 12.89 16 29 H 0.10 5.09 5.80 -2.39 -0.01 5.07 16 30 H 0.03 1.77 7.49 -2.39 -0.02 1.75 16 31 H 0.10 3.83 8.14 -2.38 -0.02 3.81 16 32 H 0.12 4.24 8.14 -2.39 -0.02 4.22 16 33 H 0.43 6.82 9.10 -74.06 -0.67 6.14 16 Total: -1.00 -65.14 299.00 4.13 -61.00 By element: Atomic # 1 Polarization: 27.01 SS G_CDS: 0.42 Total: 27.44 kcal Atomic # 6 Polarization: -0.01 SS G_CDS: 4.45 Total: 4.44 kcal Atomic # 7 Polarization: -68.12 SS G_CDS: -1.34 Total: -69.46 kcal Atomic # 8 Polarization: -69.84 SS G_CDS: -0.39 Total: -70.22 kcal Atomic # 14 Polarization: 35.77 SS G_CDS: 2.03 Total: 37.79 kcal Atomic # 16 Polarization: 10.05 SS G_CDS: -1.04 Total: 9.01 kcal Total: -65.14 4.13 -61.00 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600607909.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.015 kcal (2) G-P(sol) polarization free energy of solvation -65.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds