Wall clock time and date at job start Tue Mar 31 2020 06:22:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.33587 * 122.45068 * 2 1 4 4 S 1.70556 * 111.20849 * 179.97438 * 3 2 1 5 5 C 1.75821 * 91.68880 * 359.97438 * 4 3 2 6 6 C 1.41468 * 125.48455 * 180.02562 * 5 4 3 7 7 O 1.21710 * 119.99925 * 174.70297 * 6 5 4 8 8 O 1.34979 * 120.00413 * 354.70960 * 6 5 4 9 9 C 1.37540 * 109.02712 * 0.02562 * 5 4 3 10 10 N 1.39491 * 123.50704 * 180.02562 * 9 5 4 11 11 C 1.34777 * 120.00454 * 116.50038 * 10 9 5 12 12 O 1.21292 * 119.99582 * 4.97377 * 11 10 9 13 13 C 1.50703 * 120.00450 * 184.98048 * 11 10 9 14 14 C 1.52997 * 109.47220 * 179.97438 * 13 11 10 15 15 C 1.50694 * 109.47242 * 179.97438 * 14 13 11 16 16 H 1.08001 * 120.00179 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00130 * 179.97438 * 15 14 13 18 18 N 1.31512 * 120.00177 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 120.00141 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47100 * 89.99701 * 19 17 15 21 21 H 1.48499 * 109.47289 * 209.99992 * 19 17 15 22 22 H 1.48509 * 109.46912 * 329.99987 * 19 17 15 23 23 H 1.09003 * 109.46839 * 277.22475 * 1 2 3 24 24 H 1.08995 * 109.47119 * 37.22586 * 1 2 3 25 25 H 1.09001 * 109.46918 * 157.22627 * 1 2 3 26 26 H 1.08003 * 124.39447 * 359.95702 * 3 2 1 27 27 H 0.96693 * 114.00167 * 179.97438 * 8 6 5 28 28 H 0.97002 * 120.00304 * 296.49776 * 10 9 5 29 29 H 1.09004 * 109.46898 * 299.99714 * 13 11 10 30 30 H 1.08996 * 109.47236 * 59.99141 * 13 11 10 31 31 H 1.09004 * 109.47139 * 299.99796 * 14 13 11 32 32 H 1.09008 * 109.47167 * 59.99429 * 14 13 11 33 33 H 0.97000 * 120.00549 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2238 1.1273 0.0000 4 16 3.8967 0.7948 0.0007 5 6 3.6048 -0.9391 0.0018 6 6 4.6045 -1.9401 0.0033 7 8 4.2918 -3.1122 0.1012 8 8 5.9051 -1.5953 -0.1038 9 6 2.2482 -1.1654 0.0010 10 7 1.6801 -2.4394 0.0020 11 6 0.9291 -2.8416 1.0464 12 8 0.6723 -2.0661 1.9430 13 6 0.4087 -4.2549 1.1005 14 6 -0.4074 -4.4493 2.3800 15 6 -0.9283 -5.8623 2.4337 16 1 -0.6999 -6.5528 1.6353 17 6 -1.6958 -6.2740 3.5026 18 7 -1.9736 -5.4334 4.4751 19 14 -2.3410 -8.0257 3.5695 20 1 -1.3538 -8.8906 4.2644 21 1 -3.6285 -8.0512 4.3090 22 1 -2.5535 -8.5281 2.1882 23 1 -0.3633 0.1292 1.0196 24 1 -0.3633 0.8182 -0.6217 25 1 -0.3633 -0.9476 -0.3978 26 1 1.7991 2.1203 -0.0007 27 1 6.5134 -2.3468 -0.0931 28 1 1.8255 -3.0360 -0.7489 29 1 -0.2246 -4.4423 0.2332 30 1 1.2471 -4.9513 1.0953 31 1 0.2262 -4.2621 3.2470 32 1 -1.2459 -3.7528 2.3855 33 1 -2.5132 -5.7230 5.2273 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600648924.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:29 Heat of formation + Delta-G solvation = -103.190579 kcal Electronic energy + Delta-G solvation = -19650.346759 eV Core-core repulsion = 16381.572890 eV Total energy + Delta-G solvation = -3268.773869 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.77937 -39.68410 -37.73516 -36.10493 -33.84840 -33.45335 -31.29653 -30.79808 -27.81896 -26.22607 -24.77375 -22.08517 -21.44359 -19.99853 -19.06147 -18.66043 -17.66403 -17.05049 -16.34506 -15.92954 -15.55094 -15.41643 -14.78449 -14.43294 -14.12527 -13.83100 -13.42892 -13.25074 -12.76305 -12.27642 -12.16744 -12.05231 -12.00377 -11.63975 -11.20994 -11.15721 -10.91731 -10.75009 -10.59084 -9.95325 -9.70376 -9.65162 -9.27342 -9.07698 -8.86679 -8.32301 -8.27016 -5.95119 -3.99313 0.10647 1.24899 1.67280 2.03615 2.76676 3.06153 3.16620 3.34934 3.40469 3.42871 3.48680 4.48730 4.75625 4.89561 5.20625 5.32889 5.40094 5.46284 5.66034 5.74322 5.79226 6.14452 6.20577 6.22166 6.28587 6.29516 6.75309 6.87186 7.67751 7.69436 7.75280 7.85851 8.07138 8.38502 8.65121 9.08622 9.64213 11.15874 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.026256 B = 0.004015 C = 0.003637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.185745 B = 6971.727541 C = 7697.757820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.110 4.110 3 C -0.222 4.222 4 S 0.252 5.748 5 C -0.307 4.307 6 C 0.554 3.446 7 O -0.498 6.498 8 O -0.510 6.510 9 C 0.249 3.751 10 N -0.674 5.674 11 C 0.519 3.481 12 O -0.515 6.515 13 C -0.126 4.126 14 C 0.038 3.962 15 C -0.526 4.526 16 H 0.056 0.944 17 C 0.059 3.941 18 N -0.890 5.890 19 Si 0.893 3.107 20 H -0.281 1.281 21 H -0.286 1.286 22 H -0.274 1.274 23 H 0.082 0.918 24 H 0.065 0.935 25 H 0.066 0.934 26 H 0.175 0.825 27 H 0.412 0.588 28 H 0.413 0.587 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.024 0.976 32 H 0.024 0.976 33 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.784 13.734 -13.548 23.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.124 4.124 3 C -0.360 4.360 4 S 0.521 5.479 5 C -0.428 4.428 6 C 0.399 3.601 7 O -0.388 6.388 8 O -0.322 6.322 9 C 0.137 3.863 10 N -0.326 5.326 11 C 0.309 3.691 12 O -0.388 6.388 13 C -0.166 4.166 14 C 0.000 4.000 15 C -0.565 4.565 16 H 0.075 0.925 17 C -0.143 4.143 18 N -0.529 5.529 19 Si 0.721 3.279 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.199 1.199 23 H 0.101 0.899 24 H 0.083 0.917 25 H 0.085 0.915 26 H 0.192 0.808 27 H 0.269 0.731 28 H 0.251 0.749 29 H 0.101 0.899 30 H 0.104 0.896 31 H 0.042 0.958 32 H 0.043 0.957 33 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 13.451 15.221 -12.662 23.936 hybrid contribution -1.123 -2.504 -0.207 2.752 sum 12.328 12.717 -12.870 21.893 Atomic orbital electron populations 1.20497 0.88469 1.02516 1.03370 1.18760 0.98773 0.90731 1.04106 1.25093 0.99521 1.03359 1.08013 1.82999 1.01998 0.95493 1.67365 1.22523 0.95465 0.98652 1.26124 1.17902 0.81614 0.87162 0.73470 1.91013 1.82659 1.19303 1.45862 1.85019 1.17745 1.43114 1.86278 1.16827 0.88171 0.87345 0.93945 1.43500 1.52615 1.12892 1.23573 1.21813 0.75876 0.91582 0.79830 1.90691 1.55883 1.55486 1.36698 1.21897 1.01322 0.89150 1.04265 1.18913 0.94596 0.96645 0.89817 1.21209 1.32289 0.96768 1.06214 0.92532 1.25012 0.96259 0.97388 0.95651 1.69994 1.38382 1.34769 1.09736 0.86588 0.78312 0.84954 0.78079 1.20669 1.21233 1.19856 0.89926 0.91651 0.91516 0.80775 0.73073 0.74861 0.89923 0.89593 0.95794 0.95729 0.92962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.17 8.75 36.01 0.32 -0.85 16 2 C -0.11 -1.46 5.45 -106.29 -0.58 -2.04 16 3 C -0.22 -2.29 10.66 29.10 0.31 -1.98 16 4 S 0.25 2.51 22.82 -107.50 -2.45 0.05 16 5 C -0.31 -4.16 6.28 -38.61 -0.24 -4.40 16 6 C 0.55 7.48 8.07 31.96 0.26 7.73 16 7 O -0.50 -8.11 16.39 -19.43 -0.32 -8.42 16 8 O -0.51 -4.97 13.31 -41.26 -0.55 -5.52 16 9 C 0.25 3.71 5.66 -84.67 -0.48 3.23 16 10 N -0.67 -10.68 3.70 -10.46 -0.04 -10.72 16 11 C 0.52 10.28 6.92 -10.98 -0.08 10.21 16 12 O -0.51 -11.98 14.43 5.55 0.08 -11.90 16 13 C -0.13 -2.63 5.64 -27.88 -0.16 -2.79 16 14 C 0.04 1.02 4.26 -27.89 -0.12 0.91 16 15 C -0.53 -15.06 9.11 -34.44 -0.31 -15.37 16 16 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 17 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 18 N -0.89 -27.54 13.29 55.43 0.74 -26.80 16 19 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 20 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 22 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 23 H 0.08 1.23 7.88 -51.93 -0.41 0.82 16 24 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 25 H 0.07 0.93 7.22 -51.93 -0.37 0.55 16 26 H 0.17 1.27 8.06 -52.48 -0.42 0.85 16 27 H 0.41 2.22 8.98 45.56 0.41 2.63 16 28 H 0.41 5.54 8.68 -40.82 -0.35 5.19 16 29 H 0.08 1.53 8.14 -51.93 -0.42 1.10 16 30 H 0.09 1.72 8.14 -51.93 -0.42 1.29 16 31 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 32 H 0.02 0.71 8.10 -51.92 -0.42 0.29 16 33 H 0.26 7.57 8.31 -40.82 -0.34 7.24 16 LS Contribution 308.56 15.07 4.65 4.65 Total: -1.00 -36.08 308.56 -6.90 -42.98 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: -2.80 Total: 2.62 kcal Atomic # 6 Polarization: -2.56 SS G_CDS: -1.18 Total: -3.75 kcal Atomic # 7 Polarization: -38.22 SS G_CDS: 0.70 Total: -37.52 kcal Atomic # 8 Polarization: -25.06 SS G_CDS: -0.79 Total: -25.84 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Atomic # 16 Polarization: 2.51 SS G_CDS: -2.45 Total: 0.05 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -36.08 -6.90 -42.98 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600648924.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.211 kcal (2) G-P(sol) polarization free energy of solvation -36.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds