Wall clock time and date at job start Tue Mar 31 2020 06:22:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.33587 * 122.45068 * 2 1 4 4 S 1.70556 * 111.20849 * 179.97438 * 3 2 1 5 5 C 1.75821 * 91.68880 * 359.97438 * 4 3 2 6 6 C 1.41468 * 125.48455 * 180.02562 * 5 4 3 7 7 O 1.21710 * 119.99925 * 174.70297 * 6 5 4 8 8 O 1.34979 * 120.00413 * 354.70960 * 6 5 4 9 9 C 1.37540 * 109.02712 * 0.02562 * 5 4 3 10 10 N 1.39491 * 123.50704 * 180.02562 * 9 5 4 11 11 C 1.34777 * 120.00454 * 116.50038 * 10 9 5 12 12 O 1.21292 * 119.99582 * 4.97377 * 11 10 9 13 13 C 1.50703 * 120.00450 * 184.98048 * 11 10 9 14 14 C 1.52997 * 109.47220 * 179.97438 * 13 11 10 15 15 C 1.50694 * 109.47242 * 179.97438 * 14 13 11 16 16 H 1.08001 * 120.00179 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00130 * 179.97438 * 15 14 13 18 18 N 1.31512 * 120.00177 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 120.00141 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47100 * 89.99701 * 19 17 15 21 21 H 1.48499 * 109.47289 * 209.99992 * 19 17 15 22 22 H 1.48509 * 109.46912 * 329.99987 * 19 17 15 23 23 H 1.09003 * 109.46839 * 277.22475 * 1 2 3 24 24 H 1.08995 * 109.47119 * 37.22586 * 1 2 3 25 25 H 1.09001 * 109.46918 * 157.22627 * 1 2 3 26 26 H 1.08003 * 124.39447 * 359.95702 * 3 2 1 27 27 H 0.96693 * 114.00167 * 179.97438 * 8 6 5 28 28 H 0.97002 * 120.00304 * 296.49776 * 10 9 5 29 29 H 1.09004 * 109.46898 * 299.99714 * 13 11 10 30 30 H 1.08996 * 109.47236 * 59.99141 * 13 11 10 31 31 H 1.09004 * 109.47139 * 299.99796 * 14 13 11 32 32 H 1.09008 * 109.47167 * 59.99429 * 14 13 11 33 33 H 0.97000 * 120.00549 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2238 1.1273 0.0000 4 16 3.8967 0.7948 0.0007 5 6 3.6048 -0.9391 0.0018 6 6 4.6045 -1.9401 0.0033 7 8 4.2918 -3.1122 0.1012 8 8 5.9051 -1.5953 -0.1038 9 6 2.2482 -1.1654 0.0010 10 7 1.6801 -2.4394 0.0020 11 6 0.9291 -2.8416 1.0464 12 8 0.6723 -2.0661 1.9430 13 6 0.4087 -4.2549 1.1005 14 6 -0.4074 -4.4493 2.3800 15 6 -0.9283 -5.8623 2.4337 16 1 -0.6999 -6.5528 1.6353 17 6 -1.6958 -6.2740 3.5026 18 7 -1.9736 -5.4334 4.4751 19 14 -2.3410 -8.0257 3.5695 20 1 -1.3538 -8.8906 4.2644 21 1 -3.6285 -8.0512 4.3090 22 1 -2.5535 -8.5281 2.1882 23 1 -0.3633 0.1292 1.0196 24 1 -0.3633 0.8182 -0.6217 25 1 -0.3633 -0.9476 -0.3978 26 1 1.7991 2.1203 -0.0007 27 1 6.5134 -2.3468 -0.0931 28 1 1.8255 -3.0360 -0.7489 29 1 -0.2246 -4.4423 0.2332 30 1 1.2471 -4.9513 1.0953 31 1 0.2262 -4.2621 3.2470 32 1 -1.2459 -3.7528 2.3855 33 1 -2.5132 -5.7230 5.2273 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001600648924.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:29 Heat of formation + Delta-G solvation = -129.339671 kcal Electronic energy + Delta-G solvation = -19651.480668 eV Core-core repulsion = 16381.572890 eV Total energy + Delta-G solvation = -3269.907779 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.90971 -40.86450 -38.98640 -37.05649 -35.58404 -35.15287 -33.01254 -32.14882 -28.84544 -28.00607 -26.11084 -23.88220 -22.41113 -21.62495 -20.19385 -19.61853 -18.90470 -18.66531 -17.72416 -17.32788 -16.78375 -16.60992 -16.40403 -16.18255 -15.25683 -15.01221 -14.70046 -14.38138 -14.25119 -14.16825 -13.50235 -13.27484 -13.14685 -12.98300 -12.82034 -12.61252 -12.48597 -12.10855 -11.95046 -11.79947 -11.66861 -11.32452 -10.98772 -10.80661 -10.56462 -9.86971 -9.23714 -8.18491 -6.32384 -0.87504 0.34725 0.77445 1.04043 1.41925 1.44666 1.54795 1.55675 1.80387 2.17618 2.23854 2.44141 3.14607 3.80037 3.92075 4.05919 4.31759 4.40572 4.47393 4.50351 4.67518 4.75002 4.79352 5.01746 5.20234 5.25209 5.42100 5.46359 5.54582 5.61000 5.83716 6.16820 6.34512 6.81864 6.84711 7.17660 7.37613 8.94167 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.026256 B = 0.004015 C = 0.003637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.185745 B = 6971.727541 C = 7697.757820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.141 4.141 3 C -0.208 4.208 4 S 0.341 5.659 5 C -0.338 4.338 6 C 0.556 3.444 7 O -0.536 6.536 8 O -0.497 6.497 9 C 0.214 3.786 10 N -0.657 5.657 11 C 0.524 3.476 12 O -0.559 6.559 13 C -0.116 4.116 14 C 0.046 3.954 15 C -0.545 4.545 16 H 0.074 0.926 17 C -0.004 4.004 18 N -0.936 5.936 19 Si 0.973 3.027 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.256 1.256 23 H 0.054 0.946 24 H 0.097 0.903 25 H 0.048 0.952 26 H 0.211 0.789 27 H 0.431 0.569 28 H 0.424 0.576 29 H 0.110 0.890 30 H 0.097 0.903 31 H -0.020 1.020 32 H -0.010 1.010 33 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.082 14.271 -15.321 25.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.154 4.154 3 C -0.346 4.346 4 S 0.610 5.390 5 C -0.458 4.458 6 C 0.402 3.598 7 O -0.430 6.430 8 O -0.310 6.310 9 C 0.103 3.897 10 N -0.307 5.307 11 C 0.314 3.686 12 O -0.436 6.436 13 C -0.156 4.156 14 C 0.008 3.992 15 C -0.582 4.582 16 H 0.092 0.908 17 C -0.202 4.202 18 N -0.576 5.576 19 Si 0.797 3.203 20 H -0.199 1.199 21 H -0.209 1.209 22 H -0.179 1.179 23 H 0.073 0.927 24 H 0.116 0.884 25 H 0.067 0.933 26 H 0.227 0.773 27 H 0.292 0.708 28 H 0.263 0.737 29 H 0.128 0.872 30 H 0.116 0.884 31 H -0.001 1.001 32 H 0.008 0.992 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 14.816 15.771 -14.501 26.049 hybrid contribution -1.360 -2.488 0.313 2.853 sum 13.456 13.283 -14.188 23.639 Atomic orbital electron populations 1.20413 0.88947 1.02857 1.02131 1.18804 0.98820 0.91221 1.06512 1.25581 1.00138 1.04081 1.04805 1.82706 1.00566 0.91589 1.64095 1.22810 0.95049 1.01433 1.26464 1.17987 0.82576 0.86607 0.72600 1.90989 1.83413 1.20781 1.47772 1.84966 1.16573 1.44035 1.85431 1.17124 0.89165 0.86951 0.96470 1.43030 1.51232 1.13927 1.22543 1.21433 0.76192 0.90778 0.80243 1.90668 1.57924 1.56367 1.38632 1.21642 1.01356 0.90642 1.01977 1.18668 0.93449 0.95673 0.91378 1.21687 1.32230 0.97514 1.06816 0.90807 1.26099 0.96436 1.02552 0.95070 1.70167 1.39321 1.37493 1.10629 0.85331 0.77494 0.78541 0.78943 1.19880 1.20934 1.17934 0.92740 0.88425 0.93305 0.77254 0.70782 0.73678 0.87192 0.88433 1.00126 0.99160 0.92810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.22 8.75 71.24 0.62 -1.60 16 2 C -0.14 -3.61 5.45 -20.95 -0.11 -3.72 16 3 C -0.21 -3.68 10.66 66.76 0.71 -2.96 16 4 S 0.34 5.63 22.82 -56.49 -1.29 4.34 16 5 C -0.34 -8.68 6.28 22.90 0.14 -8.54 16 6 C 0.56 14.39 8.07 68.62 0.55 14.95 16 7 O -0.54 -17.38 16.39 19.15 0.31 -17.06 16 8 O -0.50 -8.55 13.31 -58.97 -0.78 -9.34 16 9 C 0.21 6.33 5.66 37.73 0.21 6.54 16 10 N -0.66 -21.19 3.70 -305.40 -1.13 -22.32 16 11 C 0.52 21.61 6.92 87.66 0.61 22.22 16 12 O -0.56 -27.60 14.43 -3.07 -0.04 -27.64 16 13 C -0.12 -4.97 5.64 29.85 0.17 -4.81 16 14 C 0.05 2.62 4.26 29.85 0.13 2.75 16 15 C -0.54 -31.69 9.11 25.60 0.23 -31.46 16 16 H 0.07 3.94 7.74 -2.91 -0.02 3.92 16 17 C 0.00 -0.23 5.46 84.65 0.46 0.23 16 18 N -0.94 -59.89 13.29 21.45 0.28 -59.61 16 19 Si 0.97 44.98 29.54 68.60 2.03 47.01 16 20 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 21 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 22 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 23 H 0.05 1.71 7.88 -2.39 -0.02 1.69 16 24 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 25 H 0.05 1.41 7.22 -2.39 -0.02 1.39 16 26 H 0.21 2.12 8.06 -2.91 -0.02 2.09 16 27 H 0.43 3.72 8.98 -74.06 -0.67 3.05 16 28 H 0.42 11.44 8.68 -92.71 -0.81 10.63 16 29 H 0.11 4.05 8.14 -2.39 -0.02 4.03 16 30 H 0.10 3.93 8.14 -2.39 -0.02 3.91 16 31 H -0.02 -1.28 8.10 -2.39 -0.02 -1.30 16 32 H -0.01 -0.63 8.10 -2.38 -0.02 -0.65 16 33 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 Total: -1.00 -82.30 308.56 2.81 -79.50 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: -0.30 Total: 11.52 kcal Atomic # 6 Polarization: -10.13 SS G_CDS: 3.73 Total: -6.40 kcal Atomic # 7 Polarization: -81.08 SS G_CDS: -0.84 Total: -81.92 kcal Atomic # 8 Polarization: -53.53 SS G_CDS: -0.52 Total: -54.04 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Atomic # 16 Polarization: 5.63 SS G_CDS: -1.29 Total: 4.34 kcal Total: -82.30 2.81 -79.50 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600648924.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.844 kcal (2) G-P(sol) polarization free energy of solvation -82.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds