Wall clock time and date at job start Tue Mar 31 2020 06:19:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 S 1.70593 * 124.51705 * 2 1 4 4 C 1.75801 * 91.64994 * 180.18079 * 3 2 1 5 5 C 1.46373 * 125.40722 * 179.84608 * 4 3 2 6 6 O 1.21635 * 119.99843 * 179.97438 * 5 4 3 7 7 O 1.34904 * 119.99800 * 359.97217 * 5 4 3 8 8 C 1.36775 * 109.18856 * 359.82201 * 4 3 2 9 9 C 1.34294 * 124.51066 * 179.84885 * 2 1 3 10 10 N 1.40694 * 122.53615 * 0.02562 * 9 2 1 11 11 C 1.34773 * 120.00180 * 173.43773 * 10 9 2 12 12 O 1.21304 * 120.00224 * 5.40524 * 11 10 9 13 13 C 1.50697 * 119.99861 * 185.40759 * 11 10 9 14 14 H 1.08995 * 109.47287 * 300.00101 * 13 11 10 15 15 C 1.53000 * 109.47180 * 59.99910 * 13 11 10 16 16 C 1.50701 * 109.47243 * 179.97438 * 13 11 10 17 17 H 1.07997 * 119.99746 * 0.02562 * 16 13 11 18 18 C 1.37876 * 120.00235 * 180.02562 * 16 13 11 19 19 N 1.31516 * 119.99948 * 359.97438 * 18 16 13 20 20 Si 1.86801 * 120.00235 * 180.02562 * 18 16 13 21 21 H 1.48506 * 109.47061 * 59.99911 * 20 18 16 22 22 H 1.48500 * 109.47136 * 179.97438 * 20 18 16 23 23 H 1.48495 * 109.46973 * 300.00014 * 20 18 16 24 24 H 1.08993 * 109.46850 * 270.15113 * 1 2 3 25 25 H 1.08997 * 109.46634 * 30.15047 * 1 2 3 26 26 H 1.08999 * 109.47088 * 150.14740 * 1 2 3 27 27 H 0.96700 * 113.99706 * 180.02562 * 7 5 4 28 28 H 1.08000 * 123.37322 * 179.97438 * 8 4 3 29 29 H 0.96998 * 119.99530 * 353.43366 * 10 9 2 30 30 H 1.09000 * 109.47526 * 179.97438 * 15 13 11 31 31 H 1.09006 * 109.47168 * 299.99806 * 15 13 11 32 32 H 1.09003 * 109.47158 * 59.99980 * 15 13 11 33 33 H 0.97003 * 120.00202 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 16 2.4737 1.4056 0.0000 4 6 3.9503 0.4516 -0.0055 5 6 5.3101 0.9934 -0.0113 6 8 6.2649 0.2399 -0.0144 7 8 5.5042 2.3284 -0.0133 8 6 3.6269 -0.8774 -0.0031 9 6 2.2679 -1.1066 0.0029 10 7 1.7192 -2.4021 0.0058 11 6 2.5242 -3.4752 -0.1247 12 8 3.7284 -3.3311 -0.1461 13 6 1.9281 -4.8541 -0.2442 14 1 1.3390 -5.0736 0.6462 15 6 1.0275 -4.9152 -1.4795 16 6 3.0337 -5.8694 -0.3785 17 1 4.0648 -5.5482 -0.3771 18 6 2.7288 -7.2082 -0.5032 19 7 1.4732 -7.5994 -0.5045 20 14 4.0993 -8.4668 -0.6690 21 1 4.9730 -8.4080 0.5303 22 1 3.5119 -9.8255 -0.7868 23 1 4.9023 -8.1672 -1.8816 24 1 -0.3633 0.0027 1.0276 25 1 -0.3632 0.8886 -0.5162 26 1 -0.3633 -0.8913 -0.5115 27 1 6.4350 2.5905 -0.0175 28 1 4.3627 -1.6679 -0.0060 29 1 0.7616 -2.5230 0.1018 30 1 0.5967 -5.9127 -1.5662 31 1 0.2278 -4.1808 -1.3828 32 1 1.6167 -4.6956 -2.3699 33 1 1.2586 -8.5413 -0.5926 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600868026.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:50 Heat of formation + Delta-G solvation = -96.535386 kcal Electronic energy + Delta-G solvation = -19623.967278 eV Core-core repulsion = 16355.482000 eV Total energy + Delta-G solvation = -3268.485278 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.35595 -39.82194 -37.37471 -36.08431 -33.97186 -33.40307 -31.87544 -30.45100 -27.41683 -25.23517 -24.06400 -23.52749 -21.48042 -20.22576 -18.77931 -18.41339 -17.22333 -17.12237 -16.27329 -15.73666 -15.20952 -15.07777 -14.79226 -14.53482 -13.88578 -13.75313 -13.47756 -13.14371 -12.67190 -12.52431 -12.25865 -11.98927 -11.70409 -11.58653 -11.15090 -10.94426 -10.83398 -10.74245 -10.66315 -10.41184 -10.16666 -10.01845 -9.09334 -8.71389 -8.63488 -8.40635 -7.64950 -6.10407 -4.14355 0.37022 1.46543 1.88404 2.20601 2.93793 2.95837 3.34186 3.36497 3.42067 3.61297 3.72261 4.42579 4.76100 5.02870 5.23178 5.23795 5.39021 5.46869 5.61396 5.86040 5.89177 6.14394 6.25344 6.37192 6.51022 6.70304 6.79706 6.98075 7.33822 7.63734 7.75141 7.84189 7.99188 8.23109 8.90042 8.95509 9.51734 10.97154 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.022585 B = 0.004589 C = 0.003863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.454006 B = 6100.644181 C = 7246.076650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.260 4.260 3 S 0.227 5.773 4 C -0.267 4.267 5 C 0.554 3.446 6 O -0.499 6.499 7 O -0.507 6.507 8 C -0.046 4.046 9 C 0.135 3.865 10 N -0.667 5.667 11 C 0.520 3.480 12 O -0.518 6.518 13 C 0.034 3.966 14 H 0.057 0.943 15 C -0.134 4.134 16 C -0.506 4.506 17 H 0.076 0.924 18 C 0.061 3.939 19 N -0.896 5.896 20 Si 0.903 3.097 21 H -0.276 1.276 22 H -0.288 1.288 23 H -0.276 1.276 24 H 0.076 0.924 25 H 0.072 0.928 26 H 0.075 0.925 27 H 0.412 0.588 28 H 0.200 0.800 29 H 0.410 0.590 30 H 0.097 0.903 31 H 0.012 0.988 32 H 0.033 0.967 33 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.230 18.418 1.015 18.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.383 4.383 3 S 0.495 5.505 4 C -0.385 4.385 5 C 0.397 3.603 6 O -0.388 6.388 7 O -0.318 6.318 8 C -0.082 4.082 9 C 0.027 3.973 10 N -0.313 5.313 11 C 0.311 3.689 12 O -0.392 6.392 13 C 0.013 3.987 14 H 0.075 0.925 15 C -0.192 4.192 16 C -0.544 4.544 17 H 0.094 0.906 18 C -0.140 4.140 19 N -0.535 5.535 20 Si 0.730 3.270 21 H -0.201 1.201 22 H -0.213 1.213 23 H -0.201 1.201 24 H 0.094 0.906 25 H 0.091 0.909 26 H 0.094 0.906 27 H 0.269 0.731 28 H 0.216 0.784 29 H 0.246 0.754 30 H 0.115 0.885 31 H 0.031 0.969 32 H 0.052 0.948 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.960 19.494 0.970 19.741 hybrid contribution 0.971 -2.109 -0.066 2.322 sum -1.989 17.385 0.904 17.522 Atomic orbital electron populations 1.20242 0.87193 1.03373 1.02852 1.23806 1.01726 0.97203 1.15577 1.82757 0.92695 1.05175 1.69903 1.23271 0.94949 0.97499 1.22767 1.19307 0.88069 0.80315 0.72588 1.90995 1.42405 1.59481 1.45904 1.84996 1.35998 1.24216 1.86596 1.21885 0.96726 0.95964 0.93607 1.16663 0.91579 0.85935 1.03079 1.44031 1.11636 1.02681 1.72914 1.22432 0.86936 0.87128 0.72382 1.90360 1.15652 1.85354 1.47873 1.18911 0.96974 0.85607 0.97243 0.92487 1.21779 0.96989 1.03102 0.97334 1.21070 0.93085 0.90189 1.50045 0.90621 1.24933 0.95810 0.98429 0.94868 1.69849 1.16833 1.16266 1.50541 0.86471 0.81833 0.79687 0.78981 1.20101 1.21327 1.20110 0.90560 0.90937 0.90604 0.73059 0.78419 0.75390 0.88481 0.96869 0.94759 0.92769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.72 9.93 36.01 0.36 -0.37 16 2 C -0.26 -3.33 6.29 -35.70 -0.22 -3.55 16 3 S 0.23 2.66 22.86 -107.50 -2.46 0.21 16 4 C -0.27 -4.08 6.45 -36.84 -0.24 -4.32 16 5 C 0.55 8.16 8.27 34.00 0.28 8.44 16 6 O -0.50 -9.00 17.57 -19.37 -0.34 -9.34 16 7 O -0.51 -5.24 13.40 -41.05 -0.55 -5.79 16 8 C -0.05 -0.84 8.89 -40.26 -0.36 -1.19 16 9 C 0.14 2.20 6.52 -85.33 -0.56 1.64 16 10 N -0.67 -11.43 5.24 -10.97 -0.06 -11.48 16 11 C 0.52 11.37 7.11 -10.99 -0.08 11.29 16 12 O -0.52 -12.83 12.18 5.54 0.07 -12.76 16 13 C 0.03 0.80 2.64 -92.92 -0.25 0.56 16 14 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 15 C -0.13 -2.93 8.87 37.16 0.33 -2.60 16 16 C -0.51 -13.91 8.37 -34.44 -0.29 -14.20 16 17 H 0.08 2.20 6.75 -52.49 -0.35 1.84 16 18 C 0.06 1.65 5.30 -17.82 -0.09 1.55 16 19 N -0.90 -24.44 11.32 55.43 0.63 -23.81 16 20 Si 0.90 21.53 29.54 -169.99 -5.02 16.51 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 24 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.08 0.68 7.19 -51.93 -0.37 0.31 16 27 H 0.41 2.30 8.98 45.56 0.41 2.71 16 28 H 0.20 4.24 5.20 -52.63 -0.27 3.97 16 29 H 0.41 5.78 7.05 -40.82 -0.29 5.50 16 30 H 0.10 2.35 6.07 -51.93 -0.32 2.04 16 31 H 0.01 0.22 7.70 -51.93 -0.40 -0.18 16 32 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 LS Contribution 301.87 15.07 4.55 4.55 Total: -1.00 -32.31 301.87 -6.72 -39.02 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -2.42 Total: 5.65 kcal Atomic # 6 Polarization: -1.64 SS G_CDS: -1.11 Total: -2.75 kcal Atomic # 7 Polarization: -35.87 SS G_CDS: 0.57 Total: -35.30 kcal Atomic # 8 Polarization: -27.07 SS G_CDS: -0.82 Total: -27.89 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 16 Polarization: 2.66 SS G_CDS: -2.46 Total: 0.21 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -32.31 -6.72 -39.02 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600868026.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.514 kcal (2) G-P(sol) polarization free energy of solvation -32.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds