Wall clock time and date at job start Tue Mar 31 2020 06:19:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 S 1.70593 * 124.51705 * 2 1 4 4 C 1.75801 * 91.64994 * 180.18079 * 3 2 1 5 5 C 1.46373 * 125.40722 * 179.84608 * 4 3 2 6 6 O 1.21635 * 119.99843 * 179.97438 * 5 4 3 7 7 O 1.34904 * 119.99800 * 359.97217 * 5 4 3 8 8 C 1.36775 * 109.18856 * 359.82201 * 4 3 2 9 9 C 1.34294 * 124.51066 * 179.84885 * 2 1 3 10 10 N 1.40694 * 122.53615 * 0.02562 * 9 2 1 11 11 C 1.34773 * 120.00180 * 173.43773 * 10 9 2 12 12 O 1.21304 * 120.00224 * 5.40524 * 11 10 9 13 13 C 1.50697 * 119.99861 * 185.40759 * 11 10 9 14 14 H 1.08995 * 109.47287 * 300.00101 * 13 11 10 15 15 C 1.53000 * 109.47180 * 59.99910 * 13 11 10 16 16 C 1.50701 * 109.47243 * 179.97438 * 13 11 10 17 17 H 1.07997 * 119.99746 * 0.02562 * 16 13 11 18 18 C 1.37876 * 120.00235 * 180.02562 * 16 13 11 19 19 N 1.31516 * 119.99948 * 359.97438 * 18 16 13 20 20 Si 1.86801 * 120.00235 * 180.02562 * 18 16 13 21 21 H 1.48506 * 109.47061 * 59.99911 * 20 18 16 22 22 H 1.48500 * 109.47136 * 179.97438 * 20 18 16 23 23 H 1.48495 * 109.46973 * 300.00014 * 20 18 16 24 24 H 1.08993 * 109.46850 * 270.15113 * 1 2 3 25 25 H 1.08997 * 109.46634 * 30.15047 * 1 2 3 26 26 H 1.08999 * 109.47088 * 150.14740 * 1 2 3 27 27 H 0.96700 * 113.99706 * 180.02562 * 7 5 4 28 28 H 1.08000 * 123.37322 * 179.97438 * 8 4 3 29 29 H 0.96998 * 119.99530 * 353.43366 * 10 9 2 30 30 H 1.09000 * 109.47526 * 179.97438 * 15 13 11 31 31 H 1.09006 * 109.47168 * 299.99806 * 15 13 11 32 32 H 1.09003 * 109.47158 * 59.99980 * 15 13 11 33 33 H 0.97003 * 120.00202 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 16 2.4737 1.4056 0.0000 4 6 3.9503 0.4516 -0.0055 5 6 5.3101 0.9934 -0.0113 6 8 6.2649 0.2399 -0.0144 7 8 5.5042 2.3284 -0.0133 8 6 3.6269 -0.8774 -0.0031 9 6 2.2679 -1.1066 0.0029 10 7 1.7192 -2.4021 0.0058 11 6 2.5242 -3.4752 -0.1247 12 8 3.7284 -3.3311 -0.1461 13 6 1.9281 -4.8541 -0.2442 14 1 1.3390 -5.0736 0.6462 15 6 1.0275 -4.9152 -1.4795 16 6 3.0337 -5.8694 -0.3785 17 1 4.0648 -5.5482 -0.3771 18 6 2.7288 -7.2082 -0.5032 19 7 1.4732 -7.5994 -0.5045 20 14 4.0993 -8.4668 -0.6690 21 1 4.9730 -8.4080 0.5303 22 1 3.5119 -9.8255 -0.7868 23 1 4.9023 -8.1672 -1.8816 24 1 -0.3633 0.0027 1.0276 25 1 -0.3632 0.8886 -0.5162 26 1 -0.3633 -0.8913 -0.5115 27 1 6.4350 2.5905 -0.0175 28 1 4.3627 -1.6679 -0.0060 29 1 0.7616 -2.5230 0.1018 30 1 0.5967 -5.9127 -1.5662 31 1 0.2278 -4.1808 -1.3828 32 1 1.6167 -4.6956 -2.3699 33 1 1.2586 -8.5413 -0.5926 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001600868026.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:50 Heat of formation + Delta-G solvation = -119.528902 kcal Electronic energy + Delta-G solvation = -19624.964352 eV Core-core repulsion = 16355.482000 eV Total energy + Delta-G solvation = -3269.482352 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.66854 -41.07600 -38.77801 -37.15467 -35.87376 -34.89802 -32.97838 -32.28611 -28.52165 -27.22904 -25.28716 -25.00666 -22.79951 -21.74334 -20.07432 -19.54350 -18.61021 -18.37145 -18.13260 -16.87358 -16.72765 -16.68377 -16.23797 -15.99787 -15.20895 -14.96750 -14.82452 -14.50132 -14.35163 -13.64384 -13.53564 -13.19726 -13.01650 -12.88373 -12.75421 -12.71088 -12.59839 -12.25549 -12.13363 -11.96512 -11.84744 -11.57002 -11.08785 -10.60061 -10.28004 -9.70452 -8.83263 -8.17732 -6.27662 -0.78371 0.40258 0.75328 0.94986 1.40823 1.41584 1.50398 1.65763 1.93052 2.09553 2.31403 2.49087 3.12600 3.78512 3.96819 4.14972 4.25308 4.49598 4.70836 4.75510 4.75998 4.89554 4.92791 5.01602 5.05925 5.18843 5.35560 5.46120 5.60258 5.72369 5.90817 6.17310 6.59414 6.78075 6.80198 7.30168 7.42283 8.87887 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.022585 B = 0.004589 C = 0.003863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.454006 B = 6100.644181 C = 7246.076650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.235 4.235 3 S 0.339 5.661 4 C -0.295 4.295 5 C 0.560 3.440 6 O -0.545 6.545 7 O -0.488 6.488 8 C -0.081 4.081 9 C 0.094 3.906 10 N -0.649 5.649 11 C 0.520 3.480 12 O -0.559 6.559 13 C 0.030 3.970 14 H 0.051 0.949 15 C -0.121 4.121 16 C -0.532 4.532 17 H 0.048 0.952 18 C 0.025 3.975 19 N -0.907 5.907 20 Si 0.952 3.048 21 H -0.278 1.278 22 H -0.272 1.272 23 H -0.278 1.278 24 H 0.098 0.902 25 H 0.100 0.900 26 H 0.081 0.919 27 H 0.434 0.566 28 H 0.154 0.846 29 H 0.425 0.575 30 H 0.074 0.926 31 H 0.056 0.944 32 H 0.021 0.979 33 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.434 21.129 0.986 21.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.359 4.359 3 S 0.607 5.393 4 C -0.414 4.414 5 C 0.405 3.595 6 O -0.438 6.438 7 O -0.301 6.301 8 C -0.117 4.117 9 C -0.012 4.012 10 N -0.296 5.296 11 C 0.311 3.689 12 O -0.437 6.437 13 C 0.009 3.991 14 H 0.069 0.931 15 C -0.179 4.179 16 C -0.571 4.571 17 H 0.066 0.934 18 C -0.175 4.175 19 N -0.546 5.546 20 Si 0.778 3.222 21 H -0.204 1.204 22 H -0.197 1.197 23 H -0.204 1.204 24 H 0.116 0.884 25 H 0.119 0.881 26 H 0.100 0.900 27 H 0.296 0.704 28 H 0.171 0.829 29 H 0.264 0.736 30 H 0.093 0.907 31 H 0.075 0.925 32 H 0.040 0.960 33 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.206 22.278 0.945 22.897 hybrid contribution 1.585 -2.685 -0.031 3.118 sum -3.622 19.593 0.914 19.946 Atomic orbital electron populations 1.20534 0.84053 1.05105 1.04739 1.24448 1.03924 0.96784 1.10705 1.82368 0.88676 1.02210 1.66030 1.23431 0.97212 0.97663 1.23079 1.19325 0.87505 0.81183 0.71511 1.90976 1.43773 1.60869 1.48150 1.84932 1.38191 1.21387 1.85579 1.21487 0.97082 0.96314 0.96811 1.16626 0.91356 0.86101 1.07099 1.43479 1.11727 1.02333 1.72018 1.21945 0.86606 0.87695 0.72695 1.90394 1.17273 1.86051 1.49955 1.18819 0.96171 0.86409 0.97733 0.93150 1.21588 0.97455 1.03061 0.95769 1.21226 0.93016 0.91840 1.50999 0.93406 1.25512 0.97775 0.99651 0.94566 1.69915 1.17623 1.16687 1.50406 0.85701 0.79625 0.78356 0.78484 1.20386 1.19716 1.20401 0.88396 0.88134 0.90037 0.70435 0.82916 0.73624 0.90690 0.92513 0.95960 0.92462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.16 9.93 71.24 0.71 -0.45 16 2 C -0.23 -5.22 6.29 24.79 0.16 -5.06 16 3 S 0.34 6.60 22.86 -56.49 -1.29 5.31 16 4 C -0.30 -8.89 6.45 24.05 0.16 -8.73 16 5 C 0.56 16.39 8.27 69.94 0.58 16.97 16 6 O -0.54 -20.61 17.57 19.40 0.34 -20.27 16 7 O -0.49 -8.99 13.40 -58.19 -0.78 -9.77 16 8 C -0.08 -3.02 8.89 21.83 0.19 -2.83 16 9 C 0.09 3.00 6.52 36.72 0.24 3.23 16 10 N -0.65 -22.13 5.24 -306.99 -1.61 -23.74 16 11 C 0.52 23.70 7.11 87.66 0.62 24.32 16 12 O -0.56 -29.80 12.18 -3.10 -0.04 -29.83 16 13 C 0.03 1.47 2.64 -12.29 -0.03 1.44 16 14 H 0.05 2.51 8.14 -2.39 -0.02 2.49 16 15 C -0.12 -5.29 8.87 71.98 0.64 -4.66 16 16 C -0.53 -30.59 8.37 25.60 0.21 -30.38 16 17 H 0.05 2.96 6.75 -2.91 -0.02 2.94 16 18 C 0.02 1.37 5.30 84.65 0.45 1.82 16 19 N -0.91 -49.96 11.32 21.45 0.24 -49.72 16 20 Si 0.95 45.04 29.54 68.60 2.03 47.06 16 21 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 22 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 23 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 24 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 25 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 26 H 0.08 1.09 7.19 -2.39 -0.02 1.07 16 27 H 0.43 3.90 8.98 -74.06 -0.66 3.23 16 28 H 0.15 7.21 5.20 -5.24 -0.03 7.19 16 29 H 0.42 11.27 7.05 -92.71 -0.65 10.62 16 30 H 0.07 3.64 6.07 -2.39 -0.01 3.63 16 31 H 0.06 1.93 7.70 -2.38 -0.02 1.91 16 32 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.27 13.92 8.31 -92.71 -0.77 13.15 16 Total: -1.00 -75.29 301.87 2.67 -72.62 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: -0.14 Total: 12.66 kcal Atomic # 6 Polarization: -8.25 SS G_CDS: 3.92 Total: -4.33 kcal Atomic # 7 Polarization: -72.09 SS G_CDS: -1.37 Total: -73.45 kcal Atomic # 8 Polarization: -59.40 SS G_CDS: -0.48 Total: -59.88 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.06 kcal Atomic # 16 Polarization: 6.60 SS G_CDS: -1.29 Total: 5.31 kcal Total: -75.29 2.67 -72.62 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600868026.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.910 kcal (2) G-P(sol) polarization free energy of solvation -75.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds