Wall clock time and date at job start Tue Mar 31 2020 06:19:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 S 1.70597 * 124.51603 * 2 1 4 4 C 1.75810 * 91.64858 * 179.97438 * 3 2 1 5 5 C 1.46361 * 125.40390 * 179.97438 * 4 3 2 6 6 O 1.21642 * 119.99967 * 180.02562 * 5 4 3 7 7 O 1.34912 * 120.00204 * 0.03113 * 5 4 3 8 8 C 1.36769 * 109.18708 * 359.76155 * 4 3 2 9 9 C 1.34295 * 124.51116 * 179.97438 * 2 1 3 10 10 N 1.40685 * 122.53423 * 359.97438 * 9 2 1 11 11 C 1.34776 * 120.00173 * 186.51966 * 10 9 2 12 12 O 1.21305 * 119.99959 * 354.60119 * 11 10 9 13 13 C 1.50698 * 120.00150 * 174.59468 * 11 10 9 14 14 H 1.09002 * 109.47090 * 60.00137 * 13 11 10 15 15 C 1.53001 * 109.47085 * 300.00513 * 13 11 10 16 16 C 1.50703 * 109.47554 * 180.02562 * 13 11 10 17 17 H 1.07995 * 119.99371 * 0.02562 * 16 13 11 18 18 C 1.37874 * 119.99938 * 179.97438 * 16 13 11 19 19 N 1.31509 * 120.00385 * 0.02562 * 18 16 13 20 20 Si 1.86803 * 119.99403 * 180.02562 * 18 16 13 21 21 H 1.48497 * 109.47184 * 60.00338 * 20 18 16 22 22 H 1.48511 * 109.46654 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47139 * 299.99855 * 20 18 16 24 24 H 1.08993 * 109.47462 * 270.00592 * 1 2 3 25 25 H 1.08999 * 109.46496 * 30.00547 * 1 2 3 26 26 H 1.09001 * 109.47098 * 150.00115 * 1 2 3 27 27 H 0.96703 * 113.99832 * 179.97438 * 7 5 4 28 28 H 1.08006 * 123.37780 * 180.24297 * 8 4 3 29 29 H 0.97001 * 119.99978 * 6.52833 * 10 9 2 30 30 H 1.09002 * 109.47473 * 59.99852 * 15 13 11 31 31 H 1.08993 * 109.47222 * 299.99328 * 15 13 11 32 32 H 1.09005 * 109.46866 * 179.97438 * 15 13 11 33 33 H 0.97001 * 119.99832 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4737 1.4057 0.0000 4 6 3.9504 0.4515 0.0008 5 6 5.3100 0.9934 0.0006 6 8 6.2650 0.2400 0.0007 7 8 5.5041 2.3285 0.0004 8 6 3.6269 -0.8773 0.0064 9 6 2.2679 -1.1066 0.0005 10 7 1.7192 -2.4021 0.0016 11 6 2.5242 -3.4748 0.1346 12 8 3.7285 -3.3305 0.1549 13 6 1.9283 -4.8534 0.2582 14 1 1.3386 -5.0754 -0.6312 15 6 1.0284 -4.9110 1.4943 16 6 3.0339 -5.8683 0.3947 17 1 4.0650 -5.5470 0.3925 18 6 2.7291 -7.2068 0.5233 19 7 1.4735 -7.5979 0.5264 20 14 4.0997 -8.4646 0.6931 21 1 4.9024 -8.1614 1.9051 22 1 3.5123 -9.8232 0.8148 23 1 4.9736 -8.4093 -0.5062 24 1 -0.3634 0.0001 1.0276 25 1 -0.3632 0.8900 -0.5139 26 1 -0.3633 -0.8900 -0.5138 27 1 6.4350 2.5906 0.0007 28 1 4.3627 -1.6680 0.0118 29 1 0.7615 -2.5232 -0.0935 30 1 0.2286 -4.1769 1.3960 31 1 1.6180 -4.6891 2.3837 32 1 0.5970 -5.9081 1.5834 33 1 1.2591 -8.5395 0.6173 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001600868027.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:53 Heat of formation + Delta-G solvation = -119.424979 kcal Electronic energy + Delta-G solvation = -19624.512882 eV Core-core repulsion = 16355.035036 eV Total energy + Delta-G solvation = -3269.477845 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.66860 -41.07472 -38.77837 -37.15347 -35.87358 -34.89900 -32.98052 -32.28518 -28.52427 -27.22877 -25.28744 -25.00600 -22.79911 -21.74713 -20.07240 -19.54445 -18.61198 -18.37136 -18.13248 -16.87325 -16.72874 -16.68353 -16.23962 -16.00125 -15.19669 -14.94385 -14.83874 -14.50293 -14.36858 -13.64336 -13.52698 -13.20236 -13.01795 -12.88288 -12.75495 -12.71350 -12.59676 -12.25355 -12.13683 -11.96498 -11.84734 -11.56916 -11.08733 -10.60025 -10.27849 -9.70619 -8.83161 -8.17713 -6.27646 -0.78445 0.40199 0.75309 0.94902 1.40814 1.41607 1.50399 1.65743 1.92965 2.09428 2.31437 2.49039 3.12644 3.78339 3.96898 4.14862 4.25195 4.49319 4.70745 4.75171 4.76580 4.89549 4.92744 5.01606 5.05489 5.18889 5.35545 5.46226 5.60274 5.72412 5.90911 6.17336 6.59412 6.78027 6.80220 7.30196 7.42314 8.87914 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.022586 B = 0.004589 C = 0.003863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.424175 B = 6100.726643 C = 7246.269515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.235 4.235 3 S 0.338 5.662 4 C -0.295 4.295 5 C 0.560 3.440 6 O -0.545 6.545 7 O -0.488 6.488 8 C -0.081 4.081 9 C 0.094 3.906 10 N -0.649 5.649 11 C 0.520 3.480 12 O -0.559 6.559 13 C 0.030 3.970 14 H 0.051 0.949 15 C -0.121 4.121 16 C -0.532 4.532 17 H 0.048 0.952 18 C 0.025 3.975 19 N -0.907 5.907 20 Si 0.952 3.048 21 H -0.278 1.278 22 H -0.272 1.272 23 H -0.278 1.278 24 H 0.095 0.905 25 H 0.101 0.899 26 H 0.082 0.918 27 H 0.434 0.566 28 H 0.154 0.846 29 H 0.424 0.576 30 H 0.056 0.944 31 H 0.021 0.979 32 H 0.074 0.926 33 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.433 21.128 -0.972 21.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.359 4.359 3 S 0.607 5.393 4 C -0.414 4.414 5 C 0.405 3.595 6 O -0.438 6.438 7 O -0.301 6.301 8 C -0.117 4.117 9 C -0.012 4.012 10 N -0.296 5.296 11 C 0.311 3.689 12 O -0.437 6.437 13 C 0.009 3.991 14 H 0.068 0.932 15 C -0.179 4.179 16 C -0.571 4.571 17 H 0.066 0.934 18 C -0.175 4.175 19 N -0.546 5.546 20 Si 0.778 3.222 21 H -0.204 1.204 22 H -0.197 1.197 23 H -0.204 1.204 24 H 0.114 0.886 25 H 0.119 0.881 26 H 0.101 0.899 27 H 0.296 0.704 28 H 0.171 0.829 29 H 0.264 0.736 30 H 0.075 0.925 31 H 0.040 0.960 32 H 0.093 0.907 33 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.205 22.277 -0.930 22.896 hybrid contribution 1.584 -2.685 0.022 3.118 sum -3.622 19.592 -0.908 19.944 Atomic orbital electron populations 1.20524 0.84054 1.05101 1.04666 1.24446 1.03919 0.96785 1.10714 1.82371 0.88678 1.02210 1.66031 1.23427 0.97208 0.97660 1.23071 1.19326 0.87505 0.81183 0.71509 1.90978 1.43766 1.60875 1.48150 1.84934 1.38191 1.21385 1.85582 1.21489 0.97081 0.96320 0.96806 1.16624 0.91357 0.86109 1.07085 1.43482 1.11734 1.02352 1.72010 1.21946 0.86601 0.87678 0.72712 1.90394 1.17273 1.86020 1.49994 1.18821 0.96174 0.86409 0.97726 0.93159 1.21585 0.97458 1.03050 0.95771 1.21225 0.93015 0.91870 1.50972 0.93404 1.25509 0.97773 0.99647 0.94568 1.69913 1.17626 1.16700 1.50388 0.85703 0.79630 0.78358 0.78485 1.20397 1.19717 1.20387 0.88632 0.88064 0.89940 0.70434 0.82909 0.73640 0.92508 0.95953 0.90700 0.92461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.15 10.01 71.24 0.71 -0.43 16 2 C -0.23 -5.22 6.29 24.79 0.16 -5.07 16 3 S 0.34 6.60 22.86 -56.49 -1.29 5.31 16 4 C -0.30 -8.88 6.45 24.04 0.16 -8.73 16 5 C 0.56 16.39 8.27 69.94 0.58 16.97 16 6 O -0.54 -20.61 17.57 19.37 0.34 -20.27 16 7 O -0.49 -8.99 13.40 -58.27 -0.78 -9.77 16 8 C -0.08 -3.02 8.89 21.83 0.19 -2.83 16 9 C 0.09 3.00 6.52 36.72 0.24 3.24 16 10 N -0.65 -22.13 5.26 -306.99 -1.62 -23.75 16 11 C 0.52 23.70 7.11 87.66 0.62 24.32 16 12 O -0.56 -29.80 12.18 -3.11 -0.04 -29.84 16 13 C 0.03 1.47 2.64 -12.29 -0.03 1.44 16 14 H 0.05 2.50 8.14 -2.39 -0.02 2.48 16 15 C -0.12 -5.29 8.87 71.98 0.64 -4.65 16 16 C -0.53 -30.59 8.37 25.60 0.21 -30.38 16 17 H 0.05 2.96 6.75 -2.91 -0.02 2.94 16 18 C 0.02 1.37 5.30 84.65 0.45 1.82 16 19 N -0.91 -49.96 11.32 21.45 0.24 -49.71 16 20 Si 0.95 45.03 29.54 68.60 2.03 47.06 16 21 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 22 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 23 H -0.28 -13.19 7.11 99.48 0.71 -12.49 16 24 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 25 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 26 H 0.08 1.06 7.02 -2.39 -0.02 1.04 16 27 H 0.43 3.89 8.98 -74.05 -0.66 3.23 16 28 H 0.15 7.22 5.19 -5.29 -0.03 7.19 16 29 H 0.42 11.26 6.93 -92.71 -0.64 10.62 16 30 H 0.06 1.93 7.69 -2.39 -0.02 1.92 16 31 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.07 3.64 6.07 -2.38 -0.01 3.62 16 33 H 0.27 13.92 8.31 -92.71 -0.77 13.15 16 Total: -1.00 -75.29 301.69 2.68 -72.61 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: -0.13 Total: 12.66 kcal Atomic # 6 Polarization: -8.22 SS G_CDS: 3.93 Total: -4.29 kcal Atomic # 7 Polarization: -72.09 SS G_CDS: -1.37 Total: -73.46 kcal Atomic # 8 Polarization: -59.40 SS G_CDS: -0.48 Total: -59.88 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Atomic # 16 Polarization: 6.60 SS G_CDS: -1.29 Total: 5.31 kcal Total: -75.29 2.68 -72.61 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600868027.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.818 kcal (2) G-P(sol) polarization free energy of solvation -75.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds