Wall clock time and date at job start Tue Mar 31 2020 06:15:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 O 1.42896 * 112.94066 * 48.43519 * 9 7 2 11 11 C 1.53938 * 113.73589 * 276.72885 * 9 7 2 12 12 N 1.47958 * 86.18121 * 221.92329 * 11 9 7 13 13 C 1.46903 * 111.00224 * 137.58241 * 12 11 9 14 14 C 1.50704 * 109.47018 * 70.63784 * 13 12 11 15 15 C 1.37410 * 123.35527 * 259.70510 * 14 13 12 16 16 C 1.33858 * 115.11443 * 179.81193 * 15 14 13 17 17 S 1.70623 * 110.95504 * 0.44652 * 16 15 14 18 18 C 1.36749 * 123.35486 * 80.00403 * 14 13 12 19 19 C 1.46387 * 125.46229 * 359.95126 * 18 14 13 20 20 O 1.21626 * 120.00444 * 0.02562 * 19 18 14 21 21 O 1.34903 * 119.99763 * 180.02562 * 19 18 14 22 22 C 1.47957 * 90.76493 * 24.68742 * 12 11 9 23 23 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 24 24 H 0.96709 * 114.00030 * 309.66214 * 10 9 7 25 25 H 1.09003 * 113.75836 * 336.24227 * 11 9 7 26 26 H 1.08999 * 113.75908 * 107.60037 * 11 9 7 27 27 H 1.08997 * 109.47135 * 190.63735 * 13 12 11 28 28 H 1.08999 * 109.46521 * 310.64012 * 13 12 11 29 29 H 1.08000 * 122.44453 * 0.02562 * 15 14 13 30 30 H 1.07994 * 124.52368 * 180.22224 * 16 15 14 31 31 H 0.96698 * 116.99687 * 180.02562 * 21 19 18 32 32 H 1.08999 * 113.76060 * 220.99233 * 22 12 11 33 33 H 1.09001 * 113.85944 * 89.64050 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 8 0.2161 -2.5447 -0.9847 11 6 0.7988 -2.9535 1.3990 12 7 1.2180 -4.3109 0.9854 13 6 1.9380 -4.9927 2.0693 14 6 0.9716 -5.3437 3.1712 15 6 0.8408 -4.6079 4.3243 16 6 -0.0706 -5.0667 5.1907 17 16 -0.8184 -6.4811 4.5979 18 6 0.1417 -6.4296 3.1257 19 6 0.0645 -7.3942 2.0272 20 8 0.7780 -7.2626 1.0511 21 8 -0.7981 -8.4290 2.0976 22 6 2.1616 -3.7403 -0.0011 23 1 -0.4850 0.8401 0.0004 24 1 -0.3760 -1.7802 -0.9686 25 1 1.3962 -2.5374 2.2102 26 1 -0.2739 -2.8571 1.5667 27 1 2.3964 -5.9035 1.6843 28 1 2.7125 -4.3337 2.4616 29 1 1.4280 -3.7220 4.5160 30 1 -0.2992 -4.6054 6.1400 31 1 -0.8129 -9.0399 1.3482 32 1 2.1778 -4.2727 -0.9521 33 1 3.1583 -3.5539 0.3988 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601062177.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:59 Heat of formation + Delta-G solvation = -63.402136 kcal Electronic energy + Delta-G solvation = -20225.265228 eV Core-core repulsion = 16958.216715 eV Total energy + Delta-G solvation = -3267.048513 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.07703 -39.05502 -37.57896 -35.78239 -34.12328 -32.02721 -30.65764 -28.74737 -26.29598 -25.05298 -24.23659 -22.48495 -21.68693 -18.75481 -18.54491 -18.42881 -17.31807 -16.93457 -15.66349 -15.53221 -15.06557 -14.88849 -14.75657 -14.20807 -13.83178 -13.30858 -13.09387 -12.83969 -12.78420 -11.99488 -11.91726 -11.62458 -11.39486 -11.38621 -11.13876 -10.89990 -10.76460 -10.57502 -10.40708 -10.15989 -9.94572 -9.31861 -8.83744 -8.62662 -8.40839 -8.10300 -7.70234 -6.22991 -4.32980 0.46636 1.50734 1.92011 2.35711 3.05672 3.17033 3.21815 3.27368 3.29927 4.27288 4.81632 4.98002 5.08830 5.18365 5.28992 5.50100 5.71587 5.91432 5.99843 6.06422 6.12716 6.32911 6.38441 6.40657 6.52395 6.63784 6.78870 7.09043 7.28174 7.40406 7.79448 8.03113 8.04633 8.07881 8.68508 9.36779 9.71373 10.82593 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.024731 B = 0.004958 C = 0.004511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.910022 B = 5646.541046 C = 6205.904964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.071 3.929 3 Si 0.903 3.097 4 H -0.285 1.285 5 H -0.276 1.276 6 H -0.274 1.274 7 C -0.537 4.537 8 H 0.064 0.936 9 C 0.245 3.755 10 O -0.571 6.571 11 C -0.014 4.014 12 N -0.458 5.458 13 C 0.068 3.932 14 C 0.009 3.991 15 C -0.143 4.143 16 C -0.228 4.228 17 S 0.218 5.782 18 C -0.250 4.250 19 C 0.552 3.448 20 O -0.477 6.477 21 O -0.522 6.522 22 C 0.012 3.988 23 H 0.271 0.729 24 H 0.388 0.612 25 H 0.057 0.943 26 H 0.068 0.932 27 H 0.091 0.909 28 H 0.045 0.955 29 H 0.147 0.853 30 H 0.170 0.830 31 H 0.414 0.586 32 H 0.076 0.924 33 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.981 -11.791 10.575 15.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.131 4.131 3 Si 0.730 3.270 4 H -0.210 1.210 5 H -0.201 1.201 6 H -0.200 1.200 7 C -0.575 4.575 8 H 0.083 0.917 9 C 0.203 3.797 10 O -0.383 6.383 11 C -0.143 4.143 12 N -0.181 5.181 13 C -0.062 4.062 14 C -0.006 4.006 15 C -0.174 4.174 16 C -0.366 4.366 17 S 0.487 5.513 18 C -0.369 4.369 19 C 0.394 3.606 20 O -0.364 6.364 21 O -0.335 6.335 22 C -0.117 4.117 23 H 0.081 0.919 24 H 0.242 0.758 25 H 0.076 0.924 26 H 0.087 0.913 27 H 0.109 0.891 28 H 0.063 0.937 29 H 0.164 0.836 30 H 0.187 0.813 31 H 0.272 0.728 32 H 0.094 0.906 33 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -2.282 -13.386 10.882 17.402 hybrid contribution 1.850 2.677 -0.264 3.265 sum -0.432 -10.709 10.618 15.087 Atomic orbital electron populations 1.69351 1.06104 1.27812 1.50619 1.25052 0.94954 0.99566 0.93495 0.86482 0.79551 0.82158 0.78802 1.21048 1.20122 1.19960 1.21630 0.93618 0.90765 1.51467 0.91743 1.19737 0.85181 0.90684 0.84080 1.86055 1.45174 1.50118 1.56939 1.24718 1.00424 0.87763 1.01427 1.68705 1.26007 1.15714 1.07639 1.21480 0.93059 1.00802 0.90847 1.19501 0.95037 0.90852 0.95247 1.19958 1.01503 1.02401 0.93578 1.25372 1.02837 1.02896 1.05467 1.82988 1.37539 1.21557 1.09194 1.23169 1.09630 1.03437 1.00622 1.19236 0.77336 0.79042 0.85007 1.90994 1.41184 1.72968 1.31257 1.84566 1.59947 1.38387 1.50609 1.24124 0.94915 0.96307 0.96323 0.91889 0.75755 0.92449 0.91319 0.89065 0.93655 0.83551 0.81293 0.72815 0.90588 0.91783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.35 11.09 55.43 0.61 -23.74 16 2 C 0.07 1.89 5.40 -17.82 -0.10 1.79 16 3 Si 0.90 20.47 29.54 -169.99 -5.02 15.45 16 4 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 6 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.54 -14.46 8.62 -34.44 -0.30 -14.76 16 8 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 9 C 0.24 6.36 1.44 -90.84 -0.13 6.23 16 10 O -0.57 -16.03 13.48 -35.23 -0.47 -16.50 16 11 C -0.01 -0.33 6.82 -2.77 -0.02 -0.35 16 12 N -0.46 -10.12 6.09 -239.69 -1.46 -11.58 16 13 C 0.07 1.25 4.21 -4.97 -0.02 1.23 16 14 C 0.01 0.15 4.95 -105.46 -0.52 -0.37 16 15 C -0.14 -2.02 9.90 -41.42 -0.41 -2.43 16 16 C -0.23 -2.67 10.93 29.19 0.32 -2.35 16 17 S 0.22 2.59 22.92 -107.50 -2.46 0.13 16 18 C -0.25 -3.90 6.45 -36.84 -0.24 -4.14 16 19 C 0.55 8.76 8.29 34.01 0.28 9.05 16 20 O -0.48 -9.00 15.13 -19.36 -0.29 -9.30 16 21 O -0.52 -6.20 13.29 -41.05 -0.55 -6.75 16 22 C 0.01 0.27 7.36 -2.77 -0.02 0.25 16 23 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 24 H 0.39 10.97 6.46 45.56 0.29 11.26 16 25 H 0.06 1.31 7.73 -51.93 -0.40 0.91 16 26 H 0.07 1.73 8.14 -51.93 -0.42 1.31 16 27 H 0.09 1.69 6.65 -51.93 -0.35 1.35 16 28 H 0.05 0.79 7.65 -51.93 -0.40 0.39 16 29 H 0.15 1.93 8.06 -52.49 -0.42 1.51 16 30 H 0.17 1.46 8.06 -52.49 -0.42 1.04 16 31 H 0.41 2.98 9.11 45.56 0.42 3.39 16 32 H 0.08 1.76 8.14 -51.93 -0.42 1.34 16 33 H 0.06 1.35 7.75 -51.93 -0.40 0.95 16 LS Contribution 301.10 15.07 4.54 4.54 Total: -1.00 -31.47 301.10 -8.33 -39.80 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: -2.07 Total: 13.78 kcal Atomic # 6 Polarization: -4.69 SS G_CDS: -1.15 Total: -5.84 kcal Atomic # 7 Polarization: -34.47 SS G_CDS: -0.84 Total: -35.32 kcal Atomic # 8 Polarization: -31.23 SS G_CDS: -1.31 Total: -32.55 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Atomic # 16 Polarization: 2.59 SS G_CDS: -2.46 Total: 0.13 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -31.47 -8.33 -39.80 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601062177.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.599 kcal (2) G-P(sol) polarization free energy of solvation -31.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds