Wall clock time and date at job start Tue Mar 31 2020 06:15:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 O 1.42896 * 112.94066 * 48.43519 * 9 7 2 11 11 C 1.53938 * 113.73589 * 276.72885 * 9 7 2 12 12 N 1.47958 * 86.18121 * 221.92329 * 11 9 7 13 13 C 1.46903 * 111.00224 * 137.58241 * 12 11 9 14 14 C 1.50704 * 109.47018 * 70.63784 * 13 12 11 15 15 C 1.37410 * 123.35527 * 259.70510 * 14 13 12 16 16 C 1.33858 * 115.11443 * 179.81193 * 15 14 13 17 17 S 1.70623 * 110.95504 * 0.44652 * 16 15 14 18 18 C 1.36749 * 123.35486 * 80.00403 * 14 13 12 19 19 C 1.46387 * 125.46229 * 359.95126 * 18 14 13 20 20 O 1.21626 * 120.00444 * 0.02562 * 19 18 14 21 21 O 1.34903 * 119.99763 * 180.02562 * 19 18 14 22 22 C 1.47957 * 90.76493 * 24.68742 * 12 11 9 23 23 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 24 24 H 0.96709 * 114.00030 * 309.66214 * 10 9 7 25 25 H 1.09003 * 113.75836 * 336.24227 * 11 9 7 26 26 H 1.08999 * 113.75908 * 107.60037 * 11 9 7 27 27 H 1.08997 * 109.47135 * 190.63735 * 13 12 11 28 28 H 1.08999 * 109.46521 * 310.64012 * 13 12 11 29 29 H 1.08000 * 122.44453 * 0.02562 * 15 14 13 30 30 H 1.07994 * 124.52368 * 180.22224 * 16 15 14 31 31 H 0.96698 * 116.99687 * 180.02562 * 21 19 18 32 32 H 1.08999 * 113.76060 * 220.99233 * 22 12 11 33 33 H 1.09001 * 113.85944 * 89.64050 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 8 0.2161 -2.5447 -0.9847 11 6 0.7988 -2.9535 1.3990 12 7 1.2180 -4.3109 0.9854 13 6 1.9380 -4.9927 2.0693 14 6 0.9716 -5.3437 3.1712 15 6 0.8408 -4.6079 4.3243 16 6 -0.0706 -5.0667 5.1907 17 16 -0.8184 -6.4811 4.5979 18 6 0.1417 -6.4296 3.1257 19 6 0.0645 -7.3942 2.0272 20 8 0.7780 -7.2626 1.0511 21 8 -0.7981 -8.4290 2.0976 22 6 2.1616 -3.7403 -0.0011 23 1 -0.4850 0.8401 0.0004 24 1 -0.3760 -1.7802 -0.9686 25 1 1.3962 -2.5374 2.2102 26 1 -0.2739 -2.8571 1.5667 27 1 2.3964 -5.9035 1.6843 28 1 2.7125 -4.3337 2.4616 29 1 1.4280 -3.7220 4.5160 30 1 -0.2992 -4.6054 6.1400 31 1 -0.8129 -9.0399 1.3482 32 1 2.1778 -4.2727 -0.9521 33 1 3.1583 -3.5539 0.3988 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601062177.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:58 Heat of formation + Delta-G solvation = -88.922836 kcal Electronic energy + Delta-G solvation = -20226.371889 eV Core-core repulsion = 16958.216715 eV Total energy + Delta-G solvation = -3268.155173 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.35791 -40.63857 -38.83773 -36.91724 -36.08080 -34.10290 -31.94550 -30.21257 -28.07058 -26.89610 -25.71260 -23.68329 -23.15933 -20.45252 -19.81420 -19.71686 -19.15087 -18.15218 -17.17717 -16.96040 -16.71794 -16.48667 -15.95724 -15.84319 -15.59983 -14.76914 -14.41570 -14.15935 -14.09635 -13.73643 -13.37825 -13.31828 -13.20171 -12.76680 -12.58034 -12.49497 -12.41179 -12.21245 -12.04505 -11.84969 -11.43346 -11.21366 -10.63270 -10.15697 -9.88249 -9.54617 -9.37646 -8.23186 -6.41635 -0.62952 0.48585 0.91493 1.25313 1.43241 1.45324 1.53303 1.89968 2.12163 2.38184 2.97433 3.24190 3.78630 3.93692 4.11702 4.21143 4.26589 4.41280 4.48447 4.52103 4.60078 4.70944 4.88843 4.96183 5.13288 5.19670 5.31426 5.40169 5.54045 5.61783 5.75254 5.99798 6.34341 6.63307 7.00084 7.31157 7.54563 8.81614 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.024731 B = 0.004958 C = 0.004511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.910022 B = 5646.541046 C = 6205.904964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.028 3.972 3 Si 0.969 3.031 4 H -0.280 1.280 5 H -0.267 1.267 6 H -0.274 1.274 7 C -0.560 4.560 8 H 0.065 0.935 9 C 0.218 3.782 10 O -0.587 6.587 11 C 0.007 3.993 12 N -0.466 5.466 13 C 0.072 3.928 14 C -0.013 4.013 15 C -0.167 4.167 16 C -0.212 4.212 17 S 0.289 5.711 18 C -0.287 4.287 19 C 0.552 3.448 20 O -0.520 6.520 21 O -0.509 6.509 22 C 0.018 3.982 23 H 0.274 0.726 24 H 0.382 0.618 25 H 0.063 0.937 26 H 0.047 0.953 27 H 0.085 0.915 28 H 0.054 0.946 29 H 0.151 0.849 30 H 0.206 0.794 31 H 0.433 0.567 32 H 0.066 0.934 33 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.175 -11.788 12.682 17.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.172 4.172 3 Si 0.794 3.206 4 H -0.205 1.205 5 H -0.192 1.192 6 H -0.199 1.199 7 C -0.598 4.598 8 H 0.083 0.917 9 C 0.177 3.823 10 O -0.398 6.398 11 C -0.123 4.123 12 N -0.189 5.189 13 C -0.057 4.057 14 C -0.029 4.029 15 C -0.197 4.197 16 C -0.350 4.350 17 S 0.559 5.441 18 C -0.406 4.406 19 C 0.396 3.604 20 O -0.410 6.410 21 O -0.324 6.324 22 C -0.110 4.110 23 H 0.084 0.916 24 H 0.236 0.764 25 H 0.081 0.919 26 H 0.065 0.935 27 H 0.103 0.897 28 H 0.072 0.928 29 H 0.169 0.831 30 H 0.223 0.777 31 H 0.295 0.705 32 H 0.085 0.915 33 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.489 -13.427 13.000 18.854 hybrid contribution 1.808 2.547 -0.853 3.238 sum -0.681 -10.880 12.148 16.322 Atomic orbital electron populations 1.69434 1.07284 1.28693 1.50660 1.25819 0.95770 1.02728 0.92866 0.85448 0.78300 0.77989 0.78909 1.20549 1.19190 1.19898 1.21870 0.93827 0.91700 1.52372 0.91663 1.20134 0.85447 0.91788 0.84886 1.86039 1.45745 1.49909 1.58139 1.24386 0.98999 0.88708 1.00199 1.68587 1.26608 1.14812 1.08849 1.21381 0.93695 1.00099 0.90564 1.19463 0.95622 0.92223 0.95613 1.19990 1.03109 1.03010 0.93608 1.25847 1.00843 1.02281 1.06035 1.82728 1.35037 1.20472 1.05895 1.23442 1.10995 1.03551 1.02626 1.19428 0.76958 0.79448 0.84563 1.90969 1.42987 1.74171 1.32903 1.84513 1.58452 1.37779 1.51664 1.24059 0.95445 0.94951 0.96594 0.91635 0.76423 0.91860 0.93451 0.89659 0.92833 0.83126 0.77670 0.70492 0.91505 0.90129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.21 11.09 21.45 0.24 -49.97 16 2 C 0.03 1.48 5.40 84.66 0.46 1.93 16 3 Si 0.97 41.63 29.54 68.60 2.03 43.65 16 4 H -0.28 -11.73 7.11 99.48 0.71 -11.03 16 5 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 6 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 7 C -0.56 -30.36 8.62 25.60 0.22 -30.14 16 8 H 0.07 3.43 7.81 -2.91 -0.02 3.41 16 9 C 0.22 11.57 1.44 -10.89 -0.02 11.55 16 10 O -0.59 -33.94 13.48 -148.98 -2.01 -35.95 16 11 C 0.01 0.31 6.82 86.41 0.59 0.90 16 12 N -0.47 -20.93 6.09 -915.44 -5.57 -26.50 16 13 C 0.07 2.68 4.21 85.56 0.36 3.04 16 14 C -0.01 -0.41 4.95 -20.41 -0.10 -0.51 16 15 C -0.17 -4.42 9.90 21.08 0.21 -4.22 16 16 C -0.21 -4.26 10.93 66.82 0.73 -3.53 16 17 S 0.29 5.99 22.92 -56.49 -1.29 4.70 16 18 C -0.29 -8.67 6.45 24.04 0.16 -8.51 16 19 C 0.55 17.32 8.29 69.94 0.58 17.90 16 20 O -0.52 -20.00 15.13 19.42 0.29 -19.70 16 21 O -0.51 -11.35 13.29 -58.18 -0.77 -12.12 16 22 C 0.02 0.85 7.36 86.41 0.64 1.48 16 23 H 0.27 14.09 8.31 -92.71 -0.77 13.32 16 24 H 0.38 22.34 6.46 -74.05 -0.48 21.86 16 25 H 0.06 2.90 7.73 -2.39 -0.02 2.88 16 26 H 0.05 2.44 8.14 -2.39 -0.02 2.42 16 27 H 0.09 3.24 6.65 -2.39 -0.02 3.22 16 28 H 0.05 1.86 7.65 -2.39 -0.02 1.84 16 29 H 0.15 3.76 8.06 -2.91 -0.02 3.73 16 30 H 0.21 2.54 8.06 -2.91 -0.02 2.52 16 31 H 0.43 5.62 9.11 -74.06 -0.67 4.95 16 32 H 0.07 3.19 8.14 -2.39 -0.02 3.17 16 33 H 0.08 3.42 7.75 -2.39 -0.02 3.40 16 Total: -1.00 -68.31 301.10 -3.25 -71.56 By element: Atomic # 1 Polarization: 34.40 SS G_CDS: 0.02 Total: 34.41 kcal Atomic # 6 Polarization: -13.91 SS G_CDS: 3.82 Total: -10.09 kcal Atomic # 7 Polarization: -71.13 SS G_CDS: -5.33 Total: -76.47 kcal Atomic # 8 Polarization: -65.28 SS G_CDS: -2.49 Total: -67.77 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 2.03 Total: 43.65 kcal Atomic # 16 Polarization: 5.99 SS G_CDS: -1.29 Total: 4.70 kcal Total: -68.31 -3.25 -71.56 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601062177.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.358 kcal (2) G-P(sol) polarization free energy of solvation -68.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds