Wall clock time and date at job start Tue Mar 31 2020 06:14:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 O 1.42891 * 112.94378 * 50.33064 * 9 7 2 11 11 C 1.53937 * 113.73251 * 278.76176 * 9 7 2 12 12 N 1.48184 * 86.10300 * 221.96355 * 11 9 7 13 13 C 1.46900 * 111.07654 * 137.52119 * 12 11 9 14 14 C 1.50705 * 109.47086 * 70.56111 * 13 12 11 15 15 C 1.33861 * 122.44079 * 90.02718 * 14 13 12 16 16 S 1.70621 * 110.95860 * 180.02562 * 15 14 13 17 17 C 1.75827 * 91.56419 * 0.02562 * 16 15 14 18 18 C 1.46395 * 125.46159 * 180.02562 * 17 16 15 19 19 O 1.21625 * 120.00314 * 179.97438 * 18 17 16 20 20 O 1.34902 * 119.99757 * 359.96800 * 18 17 16 21 21 C 1.36754 * 109.07749 * 359.73922 * 17 16 15 22 22 C 1.47960 * 90.80064 * 24.59714 * 12 11 9 23 23 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 24 24 H 0.96701 * 114.00462 * 309.66689 * 10 9 7 25 25 H 1.09004 * 113.75714 * 336.24047 * 11 9 7 26 26 H 1.08998 * 113.75976 * 107.60271 * 11 9 7 27 27 H 1.08995 * 109.47388 * 190.56196 * 13 12 11 28 28 H 1.09004 * 109.46735 * 310.56668 * 13 12 11 29 29 H 1.07994 * 124.51900 * 359.97438 * 15 14 13 30 30 H 0.96708 * 116.99832 * 180.02562 * 20 18 17 31 31 H 1.07996 * 123.35738 * 180.24015 * 21 17 16 32 32 H 1.08999 * 113.76188 * 221.08263 * 22 12 11 33 33 H 1.09005 * 113.85619 * 89.73473 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 8 4.0681 -0.3547 1.0137 11 6 4.1316 -0.9785 -1.3923 12 7 5.0973 -2.0371 -1.0148 13 6 5.3282 -2.9639 -2.1310 14 6 6.1157 -2.2653 -3.2093 15 6 7.4539 -2.2739 -3.2411 16 16 8.0382 -1.3955 -4.5821 17 6 6.4036 -1.0115 -5.1039 18 6 6.0527 -0.2195 -6.2840 19 8 4.8846 -0.0144 -6.5535 20 8 7.0252 0.2828 -7.0726 21 6 5.5124 -1.5767 -4.2341 22 6 4.1311 -2.6025 -0.0473 23 1 -0.4850 0.8401 0.0004 24 1 3.7022 0.5402 1.0281 25 1 3.4728 -1.2580 -2.2145 26 1 4.5845 0.0042 -1.5240 27 1 5.8876 -3.8290 -1.7751 28 1 4.3703 -3.2917 -2.5351 29 1 8.0801 -2.7699 -2.5144 30 1 6.7446 0.7997 -7.8403 31 1 4.4413 -1.4879 -4.3401 32 1 4.5837 -2.9151 0.8937 33 1 3.4714 -3.3583 -0.4736 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601062227.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:02 Heat of formation + Delta-G solvation = -52.358273 kcal Electronic energy + Delta-G solvation = -19878.590580 eV Core-core repulsion = 16612.020965 eV Total energy + Delta-G solvation = -3266.569615 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.25784 -39.60973 -37.85657 -36.16062 -34.71059 -32.42669 -31.02420 -28.69461 -26.31013 -25.59665 -25.17299 -22.82617 -20.90192 -19.30759 -19.07751 -18.50091 -17.59927 -17.28114 -16.26909 -15.89313 -15.80906 -15.33420 -14.80547 -14.44111 -13.66805 -13.47340 -13.24428 -13.09719 -12.89326 -12.66138 -12.40834 -12.09718 -11.75292 -11.70189 -11.36175 -11.01222 -10.90175 -10.71568 -10.55003 -10.48727 -9.96879 -9.37766 -9.03412 -8.89337 -8.65234 -8.42713 -8.04155 -6.32489 -4.36922 0.29271 1.36281 1.79469 2.13126 2.80584 2.86391 3.07787 3.16469 3.23593 4.14504 4.60253 4.82697 4.90030 5.05455 5.11044 5.25138 5.40280 5.52920 5.68487 5.80763 5.83497 5.94254 6.14654 6.21876 6.24417 6.37121 6.44080 6.61729 6.88386 6.91168 7.34159 7.68420 7.68898 8.15328 8.69055 8.69688 9.27132 10.80027 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.019303 B = 0.005316 C = 0.004612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.229937 B = 5266.086935 C = 6070.198507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.079 3.921 3 Si 0.856 3.144 4 H -0.268 1.268 5 H -0.252 1.252 6 H -0.285 1.285 7 C -0.538 4.538 8 H 0.085 0.915 9 C 0.201 3.799 10 O -0.552 6.552 11 C -0.027 4.027 12 N -0.474 5.474 13 C 0.074 3.926 14 C -0.106 4.106 15 C -0.205 4.205 16 S 0.230 5.770 17 C -0.275 4.275 18 C 0.559 3.441 19 O -0.504 6.504 20 O -0.515 6.515 21 C -0.023 4.023 22 C 0.024 3.976 23 H 0.269 0.731 24 H 0.349 0.651 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.081 0.919 28 H 0.053 0.947 29 H 0.173 0.827 30 H 0.416 0.584 31 H 0.156 0.844 32 H 0.082 0.918 33 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.790 -2.818 -10.956 19.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.125 4.125 3 Si 0.685 3.315 4 H -0.195 1.195 5 H -0.177 1.177 6 H -0.212 1.212 7 C -0.575 4.575 8 H 0.103 0.897 9 C 0.160 3.840 10 O -0.362 6.362 11 C -0.156 4.156 12 N -0.196 5.196 13 C -0.056 4.056 14 C -0.118 4.118 15 C -0.344 4.344 16 S 0.499 5.501 17 C -0.393 4.393 18 C 0.403 3.597 19 O -0.394 6.394 20 O -0.328 6.328 21 C -0.057 4.057 22 C -0.104 4.104 23 H 0.079 0.921 24 H 0.200 0.800 25 H 0.091 0.909 26 H 0.091 0.909 27 H 0.099 0.901 28 H 0.071 0.929 29 H 0.190 0.810 30 H 0.275 0.725 31 H 0.173 0.827 32 H 0.100 0.900 33 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 17.921 -2.921 -10.923 21.189 hybrid contribution -2.410 1.149 -0.398 2.699 sum 15.511 -1.772 -11.322 19.285 Atomic orbital electron populations 1.69873 1.06126 1.27453 1.48357 1.24994 0.94861 0.99066 0.93621 0.87355 0.80868 0.84265 0.79031 1.19482 1.17668 1.21213 1.21386 0.88496 0.95322 1.52324 0.89658 1.20460 0.92070 0.87819 0.83655 1.86443 1.67490 1.25347 1.56950 1.25070 0.93339 0.95882 1.01357 1.68702 1.34444 1.07776 1.08717 1.21347 0.98159 0.95481 0.90650 1.18645 0.93193 1.02286 0.97723 1.25371 0.99332 1.05852 1.03853 1.83007 1.04533 1.45053 1.17457 1.23287 0.98947 1.14210 1.02853 1.19328 0.82840 0.76380 0.81200 1.90975 1.19982 1.56964 1.71466 1.84584 1.40927 1.66459 1.40806 1.20811 1.01291 0.92642 0.90974 1.24013 0.92672 0.97250 0.96507 0.92106 0.80016 0.90896 0.90930 0.90089 0.92915 0.80977 0.72521 0.82664 0.89977 0.90660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.89 13.96 55.43 0.77 -25.12 16 2 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 3 Si 0.86 20.27 24.30 -169.99 -4.13 16.14 16 4 H -0.27 -6.13 7.05 56.52 0.40 -5.73 16 5 H -0.25 -5.72 5.15 56.52 0.29 -5.43 16 6 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 7 C -0.54 -14.62 9.19 -34.44 -0.32 -14.94 16 8 H 0.09 2.47 8.06 -52.49 -0.42 2.05 16 9 C 0.20 4.77 1.05 -90.84 -0.10 4.67 16 10 O -0.55 -13.62 13.35 -35.23 -0.47 -14.09 16 11 C -0.03 -0.58 5.52 -2.63 -0.01 -0.60 16 12 N -0.47 -8.94 6.25 -239.48 -1.50 -10.44 16 13 C 0.07 1.12 5.08 -4.97 -0.03 1.09 16 14 C -0.11 -1.49 4.98 -106.46 -0.53 -2.02 16 15 C -0.21 -2.43 10.67 29.20 0.31 -2.12 16 16 S 0.23 2.48 22.92 -107.50 -2.46 0.01 16 17 C -0.28 -3.73 6.45 -36.84 -0.24 -3.97 16 18 C 0.56 7.53 8.30 34.01 0.28 7.81 16 19 O -0.50 -8.35 17.63 -19.36 -0.34 -8.70 16 20 O -0.52 -4.96 13.29 -41.04 -0.55 -5.50 16 21 C -0.02 -0.33 9.21 -40.42 -0.37 -0.71 16 22 C 0.02 0.48 7.36 -2.76 -0.02 0.46 16 23 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 24 H 0.35 8.31 3.57 45.56 0.16 8.47 16 25 H 0.07 1.54 7.51 -51.93 -0.39 1.15 16 26 H 0.07 1.61 6.82 -51.93 -0.35 1.25 16 27 H 0.08 1.06 8.12 -51.93 -0.42 0.64 16 28 H 0.05 0.80 7.69 -51.93 -0.40 0.40 16 29 H 0.17 1.69 8.06 -52.49 -0.42 1.26 16 30 H 0.42 2.02 9.11 45.56 0.42 2.43 16 31 H 0.16 2.40 7.86 -52.49 -0.41 1.99 16 32 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 33 H 0.08 1.42 7.75 -51.93 -0.40 1.02 16 LS Contribution 295.30 15.07 4.45 4.45 Total: -1.00 -32.46 295.30 -7.66 -40.12 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: -2.32 Total: 11.34 kcal Atomic # 6 Polarization: -7.10 SS G_CDS: -1.12 Total: -8.22 kcal Atomic # 7 Polarization: -34.84 SS G_CDS: -0.72 Total: -35.56 kcal Atomic # 8 Polarization: -26.93 SS G_CDS: -1.36 Total: -28.29 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -4.13 Total: 16.14 kcal Atomic # 16 Polarization: 2.48 SS G_CDS: -2.46 Total: 0.01 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -32.46 -7.66 -40.12 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601062227.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.235 kcal (2) G-P(sol) polarization free energy of solvation -32.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds