Wall clock time and date at job start Tue Mar 31 2020 06:14:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 O 1.42891 * 112.94378 * 50.33064 * 9 7 2 11 11 C 1.53937 * 113.73251 * 278.76176 * 9 7 2 12 12 N 1.48184 * 86.10300 * 221.96355 * 11 9 7 13 13 C 1.46900 * 111.07654 * 137.52119 * 12 11 9 14 14 C 1.50705 * 109.47086 * 70.56111 * 13 12 11 15 15 C 1.33861 * 122.44079 * 90.02718 * 14 13 12 16 16 S 1.70621 * 110.95860 * 180.02562 * 15 14 13 17 17 C 1.75827 * 91.56419 * 0.02562 * 16 15 14 18 18 C 1.46395 * 125.46159 * 180.02562 * 17 16 15 19 19 O 1.21625 * 120.00314 * 179.97438 * 18 17 16 20 20 O 1.34902 * 119.99757 * 359.96800 * 18 17 16 21 21 C 1.36754 * 109.07749 * 359.73922 * 17 16 15 22 22 C 1.47960 * 90.80064 * 24.59714 * 12 11 9 23 23 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 24 24 H 0.96701 * 114.00462 * 309.66689 * 10 9 7 25 25 H 1.09004 * 113.75714 * 336.24047 * 11 9 7 26 26 H 1.08998 * 113.75976 * 107.60271 * 11 9 7 27 27 H 1.08995 * 109.47388 * 190.56196 * 13 12 11 28 28 H 1.09004 * 109.46735 * 310.56668 * 13 12 11 29 29 H 1.07994 * 124.51900 * 359.97438 * 15 14 13 30 30 H 0.96708 * 116.99832 * 180.02562 * 20 18 17 31 31 H 1.07996 * 123.35738 * 180.24015 * 21 17 16 32 32 H 1.08999 * 113.76188 * 221.08263 * 22 12 11 33 33 H 1.09005 * 113.85619 * 89.73473 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 8 4.0681 -0.3547 1.0137 11 6 4.1316 -0.9785 -1.3923 12 7 5.0973 -2.0371 -1.0148 13 6 5.3282 -2.9639 -2.1310 14 6 6.1157 -2.2653 -3.2093 15 6 7.4539 -2.2739 -3.2411 16 16 8.0382 -1.3955 -4.5821 17 6 6.4036 -1.0115 -5.1039 18 6 6.0527 -0.2195 -6.2840 19 8 4.8846 -0.0144 -6.5535 20 8 7.0252 0.2828 -7.0726 21 6 5.5124 -1.5767 -4.2341 22 6 4.1311 -2.6025 -0.0473 23 1 -0.4850 0.8401 0.0004 24 1 3.7022 0.5402 1.0281 25 1 3.4728 -1.2580 -2.2145 26 1 4.5845 0.0042 -1.5240 27 1 5.8876 -3.8290 -1.7751 28 1 4.3703 -3.2917 -2.5351 29 1 8.0801 -2.7699 -2.5144 30 1 6.7446 0.7997 -7.8403 31 1 4.4413 -1.4879 -4.3401 32 1 4.5837 -2.9151 0.8937 33 1 3.4714 -3.3583 -0.4736 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601062227.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:02 Heat of formation + Delta-G solvation = -80.106741 kcal Electronic energy + Delta-G solvation = -19879.793844 eV Core-core repulsion = 16612.020965 eV Total energy + Delta-G solvation = -3267.772879 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.36870 -41.03597 -39.03229 -37.13127 -36.45226 -34.54689 -32.21154 -30.12573 -27.95022 -27.16322 -26.40437 -24.32808 -22.05608 -20.85412 -20.26094 -19.64978 -19.20055 -18.54232 -18.08667 -17.11647 -16.94505 -16.75892 -16.06761 -15.88149 -15.28825 -15.03190 -14.67031 -14.56539 -14.11660 -14.01248 -13.76122 -13.68688 -13.16522 -12.83068 -12.71185 -12.63117 -12.43028 -12.19193 -12.01959 -11.88120 -11.76365 -11.18574 -10.94834 -10.48659 -9.97597 -9.70982 -9.39264 -8.46154 -6.55371 -0.69871 0.43901 0.85116 1.10087 1.18343 1.26477 1.33590 1.79876 1.96376 2.14638 2.78609 3.05149 3.59491 3.82117 4.01296 4.05701 4.16303 4.17062 4.20514 4.44152 4.59879 4.67066 4.77586 4.84856 4.92179 5.12826 5.16002 5.23999 5.32529 5.43249 5.45982 6.02024 6.16938 6.49966 6.77263 6.84226 7.12595 8.69698 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.019303 B = 0.005316 C = 0.004612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.229937 B = 5266.086935 C = 6070.198507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.025 3.975 3 Si 0.914 3.086 4 H -0.251 1.251 5 H -0.237 1.237 6 H -0.286 1.286 7 C -0.545 4.545 8 H 0.051 0.949 9 C 0.181 3.819 10 O -0.557 6.557 11 C -0.015 4.015 12 N -0.467 5.467 13 C 0.075 3.925 14 C -0.130 4.130 15 C -0.198 4.198 16 S 0.314 5.686 17 C -0.303 4.303 18 C 0.563 3.437 19 O -0.547 6.547 20 O -0.501 6.501 21 C -0.042 4.042 22 C 0.031 3.969 23 H 0.271 0.729 24 H 0.350 0.650 25 H 0.066 0.934 26 H 0.067 0.933 27 H 0.108 0.892 28 H 0.046 0.954 29 H 0.199 0.801 30 H 0.437 0.563 31 H 0.133 0.867 32 H 0.093 0.907 33 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.385 -2.599 -11.444 22.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.175 4.175 3 Si 0.739 3.261 4 H -0.176 1.176 5 H -0.161 1.161 6 H -0.213 1.213 7 C -0.583 4.583 8 H 0.069 0.931 9 C 0.140 3.860 10 O -0.367 6.367 11 C -0.144 4.144 12 N -0.189 5.189 13 C -0.055 4.055 14 C -0.142 4.142 15 C -0.337 4.337 16 S 0.583 5.417 17 C -0.421 4.421 18 C 0.408 3.592 19 O -0.440 6.440 20 O -0.316 6.316 21 C -0.077 4.077 22 C -0.097 4.097 23 H 0.080 0.920 24 H 0.201 0.799 25 H 0.084 0.916 26 H 0.085 0.915 27 H 0.127 0.873 28 H 0.064 0.936 29 H 0.216 0.784 30 H 0.300 0.700 31 H 0.151 0.849 32 H 0.111 0.889 33 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 21.557 -2.707 -11.428 24.549 hybrid contribution -3.434 0.999 -0.315 3.590 sum 18.123 -1.708 -11.743 21.663 Atomic orbital electron populations 1.70010 1.07911 1.28533 1.50214 1.25806 0.95585 1.02847 0.93256 0.86392 0.80029 0.79564 0.80067 1.17601 1.16116 1.21283 1.21615 0.90771 0.94112 1.51809 0.93112 1.20674 0.90112 0.90270 0.84903 1.86433 1.67260 1.25587 1.57420 1.24777 0.93610 0.96683 0.99333 1.68623 1.32692 1.07817 1.09799 1.21382 0.98695 0.95563 0.89827 1.18483 0.94070 1.03881 0.97757 1.25759 0.98767 1.04730 1.04451 1.82728 1.01216 1.42477 1.15241 1.23504 1.01016 1.14560 1.03019 1.19395 0.82599 0.75851 0.81309 1.90956 1.21753 1.58664 1.72613 1.84529 1.39495 1.66225 1.41332 1.20722 1.00674 0.94067 0.92265 1.23962 0.92865 0.95294 0.97593 0.91954 0.79851 0.91601 0.91497 0.87339 0.93552 0.78361 0.70027 0.84914 0.88916 0.90074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.29 13.96 21.45 0.30 -55.99 16 2 C 0.03 1.43 5.47 84.66 0.46 1.90 16 3 Si 0.91 41.95 24.30 68.60 1.67 43.62 16 4 H -0.25 -10.74 7.05 99.48 0.70 -10.04 16 5 H -0.24 -10.24 5.15 99.48 0.51 -9.72 16 6 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 7 C -0.55 -30.46 9.19 25.60 0.24 -30.22 16 8 H 0.05 3.09 8.06 -2.91 -0.02 3.07 16 9 C 0.18 8.54 1.05 -10.89 -0.01 8.53 16 10 O -0.56 -26.71 13.35 -148.98 -1.99 -28.70 16 11 C -0.01 -0.61 5.52 86.37 0.48 -0.14 16 12 N -0.47 -16.81 6.25 -914.77 -5.72 -22.53 16 13 C 0.08 2.14 5.08 85.56 0.43 2.57 16 14 C -0.13 -3.40 4.98 -21.05 -0.10 -3.51 16 15 C -0.20 -3.94 10.67 66.82 0.71 -3.22 16 16 S 0.31 5.56 22.92 -56.49 -1.29 4.26 16 17 C -0.30 -7.76 6.45 24.05 0.16 -7.60 16 18 C 0.56 14.60 8.30 69.95 0.58 15.18 16 19 O -0.55 -18.31 17.63 19.43 0.34 -17.97 16 20 O -0.50 -8.44 13.29 -58.16 -0.77 -9.21 16 21 C -0.04 -1.22 9.21 21.73 0.20 -1.02 16 22 C 0.03 1.22 7.36 86.41 0.64 1.86 16 23 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 24 H 0.35 16.10 3.57 -74.06 -0.26 15.84 16 25 H 0.07 2.84 7.51 -2.38 -0.02 2.82 16 26 H 0.07 2.89 6.82 -2.39 -0.02 2.87 16 27 H 0.11 2.48 8.12 -2.39 -0.02 2.46 16 28 H 0.05 1.38 7.69 -2.39 -0.02 1.36 16 29 H 0.20 2.86 8.06 -2.91 -0.02 2.83 16 30 H 0.44 3.20 9.11 -74.05 -0.67 2.52 16 31 H 0.13 4.33 7.86 -2.91 -0.02 4.31 16 32 H 0.09 3.43 8.14 -2.39 -0.02 3.41 16 33 H 0.08 3.04 7.75 -2.38 -0.02 3.03 16 Total: -1.00 -71.59 295.30 -3.66 -75.25 By element: Atomic # 1 Polarization: 26.92 SS G_CDS: 0.03 Total: 26.95 kcal Atomic # 6 Polarization: -19.46 SS G_CDS: 3.78 Total: -15.68 kcal Atomic # 7 Polarization: -73.10 SS G_CDS: -5.42 Total: -78.52 kcal Atomic # 8 Polarization: -53.47 SS G_CDS: -2.42 Total: -55.89 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 1.67 Total: 43.62 kcal Atomic # 16 Polarization: 5.56 SS G_CDS: -1.29 Total: 4.26 kcal Total: -71.59 -3.66 -75.25 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601062227.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.859 kcal (2) G-P(sol) polarization free energy of solvation -71.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds