Wall clock time and date at job start Tue Mar 31 2020 06:14:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99931 * 2 1 4 4 H 1.48501 * 109.46755 * 269.99801 * 3 2 1 5 5 H 1.48495 * 109.46931 * 29.99815 * 3 2 1 6 6 H 1.48500 * 109.46738 * 150.00057 * 3 2 1 7 7 C 1.37876 * 119.99769 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99840 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00344 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.46953 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.46623 * 179.97438 * 10 9 7 12 12 C 1.50699 * 109.46866 * 179.97438 * 11 10 9 13 13 O 1.21304 * 120.00281 * 359.97438 * 12 11 10 14 14 N 1.34779 * 120.00033 * 180.02562 * 12 11 10 15 15 C 1.39720 * 120.00034 * 179.97438 * 14 12 11 16 16 C 1.33470 * 124.74470 * 179.97438 * 15 14 12 17 17 C 1.44529 * 112.92905 * 180.02562 * 16 15 14 18 18 C 1.47022 * 123.44900 * 179.97438 * 17 16 15 19 19 O 1.21571 * 119.99893 * 0.02562 * 18 17 16 20 20 O 1.34806 * 120.00177 * 179.97438 * 18 17 16 21 21 C 1.36015 * 113.10542 * 0.02562 * 17 16 15 22 22 S 1.70420 * 110.94629 * 359.72828 * 21 17 16 23 23 H 0.97000 * 120.00540 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.46974 * 59.99987 * 9 7 2 25 25 H 1.09001 * 109.46547 * 300.00078 * 9 7 2 26 26 H 1.09000 * 109.47486 * 60.00062 * 10 9 7 27 27 H 1.09001 * 109.47362 * 299.99339 * 10 9 7 28 28 H 1.08993 * 109.46955 * 300.00075 * 11 10 9 29 29 H 1.09000 * 109.47050 * 59.99904 * 11 10 9 30 30 H 0.96996 * 119.99850 * 359.97438 * 14 12 11 31 31 H 1.08005 * 123.53577 * 0.02875 * 16 15 14 32 32 H 0.96698 * 116.99658 * 180.02562 * 20 18 17 33 33 H 1.08001 * 124.52305 * 180.02562 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6621 0.0027 11 6 1.4802 -4.9871 0.0046 12 6 2.4595 -6.1326 0.0050 13 8 3.6521 -5.9110 0.0034 14 7 2.0102 -7.4033 0.0060 15 6 2.9182 -8.4653 0.0058 16 6 2.5789 -9.7561 0.0072 17 6 3.7231 -10.6390 0.0072 18 6 3.6153 -12.1053 0.0092 19 8 2.5207 -12.6343 0.0105 20 8 4.7301 -12.8632 0.0086 21 6 4.9100 -9.9747 0.0063 22 16 4.6642 -8.2883 -0.0021 23 1 -0.4851 0.8400 -0.0004 24 1 0.6240 -2.5576 -0.8880 25 1 0.6247 -2.5563 0.8920 26 1 2.8719 -3.6036 0.8927 27 1 2.8719 -3.6052 -0.8873 28 1 0.8539 -5.0438 0.8948 29 1 0.8532 -5.0459 -0.8851 30 1 1.0566 -7.5805 0.0069 31 1 1.5565 -10.1043 0.0083 32 1 4.6087 -13.8225 0.0096 33 1 5.8787 -10.4521 0.0058 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601064650.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:29 Heat of formation + Delta-G solvation = -113.656671 kcal Electronic energy + Delta-G solvation = -18435.974552 eV Core-core repulsion = 15166.746839 eV Total energy + Delta-G solvation = -3269.227713 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.46177 -40.14791 -37.54668 -36.25431 -34.71093 -34.35181 -32.17628 -29.60446 -27.75349 -25.66261 -24.25204 -22.45168 -21.46035 -20.30950 -19.62858 -18.29343 -18.12131 -17.05451 -16.63892 -16.17346 -15.97065 -15.75024 -15.45407 -14.50751 -14.05738 -14.02395 -13.84261 -13.01761 -12.98694 -12.92023 -12.37705 -11.93239 -11.85660 -11.53602 -11.43433 -11.03241 -10.87092 -10.81126 -10.73796 -10.56739 -9.92966 -9.78772 -9.41583 -9.12130 -8.70536 -8.37730 -8.31269 -6.03160 -4.05063 0.49584 1.08960 1.42678 1.78681 2.53949 2.58077 2.92184 3.07279 3.31407 3.37641 3.41863 4.44562 4.68767 4.80624 5.02402 5.12294 5.33152 5.38001 5.49195 5.49402 5.53191 5.87684 6.04084 6.13547 6.17548 6.57275 6.77274 7.02096 7.03099 7.62560 7.64156 7.73949 7.87117 7.96570 8.39324 9.01807 9.59399 11.08264 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.057095 B = 0.002595 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 490.292040 B =10787.433236 C =11251.972770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.520 4.520 8 H 0.056 0.944 9 C 0.020 3.980 10 C -0.096 4.096 11 C -0.133 4.133 12 C 0.507 3.493 13 O -0.506 6.506 14 N -0.644 5.644 15 C 0.022 3.978 16 C -0.151 4.151 17 C -0.135 4.135 18 C 0.548 3.452 19 O -0.518 6.518 20 O -0.514 6.514 21 C -0.242 4.242 22 S 0.327 5.673 23 H 0.260 0.740 24 H 0.017 0.983 25 H 0.017 0.983 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.420 0.580 31 H 0.154 0.846 32 H 0.413 0.587 33 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.746 -23.048 0.007 24.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.558 4.558 8 H 0.075 0.925 9 C -0.017 4.017 10 C -0.134 4.134 11 C -0.173 4.173 12 C 0.297 3.703 13 O -0.381 6.381 14 N -0.290 5.290 15 C -0.191 4.191 16 C -0.182 4.182 17 C -0.151 4.151 18 C 0.391 3.609 19 O -0.408 6.408 20 O -0.326 6.326 21 C -0.381 4.381 22 S 0.591 5.409 23 H 0.070 0.930 24 H 0.035 0.965 25 H 0.035 0.965 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.115 0.885 29 H 0.115 0.885 30 H 0.258 0.742 31 H 0.171 0.829 32 H 0.271 0.729 33 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 8.119 -21.125 0.001 22.631 hybrid contribution -1.251 -1.274 0.001 1.786 sum 6.868 -22.399 0.002 23.428 Atomic orbital electron populations 1.69953 1.06051 1.26656 1.50975 1.25021 0.94865 0.99313 0.95295 0.86582 0.79887 0.83356 0.78136 1.20646 1.21239 1.19818 1.21238 0.93180 0.90922 1.50457 0.92532 1.19132 0.93916 0.91368 0.97266 1.21504 0.98790 0.91157 1.01994 1.21886 0.97768 0.93038 1.04598 1.21866 0.91044 0.83258 0.74141 1.90596 1.17132 1.82820 1.47555 1.43334 1.09398 1.03730 1.72509 1.22046 0.97314 0.90748 1.08993 1.20525 0.99604 0.89024 1.09073 1.18707 0.92777 0.89691 1.13957 1.20205 0.81292 0.87563 0.71863 1.90902 1.28473 1.74658 1.46742 1.84575 1.37214 1.24706 1.86082 1.26540 1.02507 1.03869 1.05197 1.84514 0.94351 0.95560 1.66523 0.92995 0.96500 0.96498 0.92400 0.92398 0.88483 0.88490 0.74206 0.82866 0.72858 0.80584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.46 13.29 55.43 0.74 -25.72 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 7 C -0.52 -14.51 9.11 -34.44 -0.31 -14.83 16 8 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 9 C 0.02 0.50 4.97 -27.88 -0.14 0.36 16 10 C -0.10 -1.90 4.44 -26.73 -0.12 -2.01 16 11 C -0.13 -1.90 5.70 -27.88 -0.16 -2.06 16 12 C 0.51 7.03 7.80 -10.99 -0.09 6.94 16 13 O -0.51 -8.46 13.45 5.54 0.07 -8.38 16 14 N -0.64 -6.98 5.43 -10.99 -0.06 -7.04 16 15 C 0.02 0.26 7.10 -15.62 -0.11 0.15 16 16 C -0.15 -1.65 10.11 -38.77 -0.39 -2.05 16 17 C -0.13 -1.47 5.98 -104.66 -0.63 -2.10 16 18 C 0.55 5.93 8.30 34.29 0.28 6.21 16 19 O -0.52 -6.96 17.58 -19.32 -0.34 -7.30 16 20 O -0.51 -3.87 13.08 -40.78 -0.53 -4.40 16 21 C -0.24 -2.34 10.54 29.93 0.32 -2.03 16 22 S 0.33 3.66 20.07 -107.50 -2.16 1.51 16 23 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 24 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.06 1.18 8.10 -51.93 -0.42 0.76 16 27 H 0.06 1.18 8.10 -51.93 -0.42 0.76 16 28 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.42 3.19 8.80 -40.82 -0.36 2.83 16 31 H 0.15 1.52 8.06 -52.48 -0.42 1.10 16 32 H 0.41 1.21 9.11 45.56 0.42 1.63 16 33 H 0.18 1.32 8.01 -52.49 -0.42 0.90 16 LS Contribution 312.06 15.07 4.70 4.70 Total: -1.00 -34.28 312.06 -6.90 -41.18 By element: Atomic # 1 Polarization: 1.75 SS G_CDS: -2.86 Total: -1.11 kcal Atomic # 6 Polarization: -8.49 SS G_CDS: -1.44 Total: -9.93 kcal Atomic # 7 Polarization: -33.43 SS G_CDS: 0.68 Total: -32.76 kcal Atomic # 8 Polarization: -19.29 SS G_CDS: -0.80 Total: -20.09 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: 3.66 SS G_CDS: -2.16 Total: 1.51 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -34.28 -6.90 -41.18 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601064650.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.473 kcal (2) G-P(sol) polarization free energy of solvation -34.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds