Wall clock time and date at job start Tue Mar 31 2020 06:14:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99931 * 2 1 4 4 H 1.48501 * 109.46755 * 269.99801 * 3 2 1 5 5 H 1.48495 * 109.46931 * 29.99815 * 3 2 1 6 6 H 1.48500 * 109.46738 * 150.00057 * 3 2 1 7 7 C 1.37876 * 119.99769 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99840 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00344 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.46953 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.46623 * 179.97438 * 10 9 7 12 12 C 1.50699 * 109.46866 * 179.97438 * 11 10 9 13 13 O 1.21304 * 120.00281 * 359.97438 * 12 11 10 14 14 N 1.34779 * 120.00033 * 180.02562 * 12 11 10 15 15 C 1.39720 * 120.00034 * 179.97438 * 14 12 11 16 16 C 1.33470 * 124.74470 * 179.97438 * 15 14 12 17 17 C 1.44529 * 112.92905 * 180.02562 * 16 15 14 18 18 C 1.47022 * 123.44900 * 179.97438 * 17 16 15 19 19 O 1.21571 * 119.99893 * 0.02562 * 18 17 16 20 20 O 1.34806 * 120.00177 * 179.97438 * 18 17 16 21 21 C 1.36015 * 113.10542 * 0.02562 * 17 16 15 22 22 S 1.70420 * 110.94629 * 359.72828 * 21 17 16 23 23 H 0.97000 * 120.00540 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.46974 * 59.99987 * 9 7 2 25 25 H 1.09001 * 109.46547 * 300.00078 * 9 7 2 26 26 H 1.09000 * 109.47486 * 60.00062 * 10 9 7 27 27 H 1.09001 * 109.47362 * 299.99339 * 10 9 7 28 28 H 1.08993 * 109.46955 * 300.00075 * 11 10 9 29 29 H 1.09000 * 109.47050 * 59.99904 * 11 10 9 30 30 H 0.96996 * 119.99850 * 359.97438 * 14 12 11 31 31 H 1.08005 * 123.53577 * 0.02875 * 16 15 14 32 32 H 0.96698 * 116.99658 * 180.02562 * 20 18 17 33 33 H 1.08001 * 124.52305 * 180.02562 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6621 0.0027 11 6 1.4802 -4.9871 0.0046 12 6 2.4595 -6.1326 0.0050 13 8 3.6521 -5.9110 0.0034 14 7 2.0102 -7.4033 0.0060 15 6 2.9182 -8.4653 0.0058 16 6 2.5789 -9.7561 0.0072 17 6 3.7231 -10.6390 0.0072 18 6 3.6153 -12.1053 0.0092 19 8 2.5207 -12.6343 0.0105 20 8 4.7301 -12.8632 0.0086 21 6 4.9100 -9.9747 0.0063 22 16 4.6642 -8.2883 -0.0021 23 1 -0.4851 0.8400 -0.0004 24 1 0.6240 -2.5576 -0.8880 25 1 0.6247 -2.5563 0.8920 26 1 2.8719 -3.6036 0.8927 27 1 2.8719 -3.6052 -0.8873 28 1 0.8539 -5.0438 0.8948 29 1 0.8532 -5.0459 -0.8851 30 1 1.0566 -7.5805 0.0069 31 1 1.5565 -10.1043 0.0083 32 1 4.6087 -13.8225 0.0096 33 1 5.8787 -10.4521 0.0058 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601064650.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:29 Heat of formation + Delta-G solvation = -137.431563 kcal Electronic energy + Delta-G solvation = -18437.005508 eV Core-core repulsion = 15166.746839 eV Total energy + Delta-G solvation = -3270.258670 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.37527 -41.08703 -38.42472 -37.01588 -36.18803 -35.60621 -34.05470 -30.76518 -29.24908 -26.47795 -25.96998 -23.52812 -22.60397 -21.71648 -20.60776 -19.14588 -18.97386 -18.56089 -17.83723 -17.42527 -17.02785 -16.63450 -16.47990 -16.37036 -15.35167 -15.22342 -14.66579 -14.29270 -14.11140 -13.87407 -13.71690 -13.67656 -13.13074 -12.64728 -12.59160 -12.53342 -12.41445 -12.29481 -11.96287 -11.73065 -11.52929 -11.38715 -11.21792 -10.85460 -10.52706 -9.56958 -9.18831 -8.19140 -6.28479 -0.32111 0.25343 0.53922 0.95843 1.41343 1.41691 1.53064 1.53710 1.71733 2.08286 2.30105 2.42943 3.14541 3.70192 3.97343 4.17589 4.24292 4.26111 4.34905 4.58169 4.71804 4.79847 4.96930 5.06044 5.10724 5.19717 5.27239 5.56250 5.56510 5.77750 5.89133 6.14548 6.29264 6.86679 6.88345 6.98506 7.40299 8.92228 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.057095 B = 0.002595 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 490.292040 B =10787.433236 C =11251.972770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.002 3.998 3 Si 0.959 3.041 4 H -0.273 1.273 5 H -0.280 1.280 6 H -0.267 1.267 7 C -0.545 4.545 8 H 0.053 0.947 9 C 0.024 3.976 10 C -0.083 4.083 11 C -0.124 4.124 12 C 0.512 3.488 13 O -0.540 6.540 14 N -0.628 5.628 15 C 0.005 3.995 16 C -0.143 4.143 17 C -0.157 4.157 18 C 0.554 3.446 19 O -0.551 6.551 20 O -0.504 6.504 21 C -0.217 4.217 22 S 0.306 5.694 23 H 0.264 0.736 24 H 0.002 0.998 25 H 0.002 0.998 26 H 0.046 0.954 27 H 0.046 0.954 28 H 0.117 0.883 29 H 0.117 0.883 30 H 0.436 0.564 31 H 0.162 0.838 32 H 0.434 0.566 33 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.468 -24.065 -0.002 25.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.784 3.216 4 H -0.198 1.198 5 H -0.206 1.206 6 H -0.192 1.192 7 C -0.583 4.583 8 H 0.071 0.929 9 C -0.013 4.013 10 C -0.122 4.122 11 C -0.163 4.163 12 C 0.302 3.698 13 O -0.418 6.418 14 N -0.275 5.275 15 C -0.208 4.208 16 C -0.174 4.174 17 C -0.173 4.173 18 C 0.399 3.601 19 O -0.444 6.444 20 O -0.318 6.318 21 C -0.356 4.356 22 S 0.569 5.431 23 H 0.073 0.927 24 H 0.020 0.980 25 H 0.020 0.980 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.135 0.865 29 H 0.135 0.865 30 H 0.277 0.723 31 H 0.180 0.820 32 H 0.296 0.704 33 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 8.838 -22.197 -0.010 23.892 hybrid contribution -1.428 -1.066 0.004 1.782 sum 7.410 -23.262 -0.006 24.414 Atomic orbital electron populations 1.70059 1.07480 1.27722 1.51743 1.25889 0.95787 1.03034 0.94855 0.85533 0.78690 0.78891 0.78476 1.19823 1.20584 1.19170 1.21702 0.93416 0.92753 1.50416 0.92860 1.19031 0.94280 0.92365 0.95651 1.21189 0.97680 0.92415 1.00879 1.21680 0.97486 0.90530 1.06646 1.21565 0.90244 0.83977 0.74026 1.90597 1.18274 1.83534 1.49352 1.43017 1.10258 1.02687 1.71506 1.22097 0.97340 0.90888 1.10492 1.20683 1.00246 0.88807 1.07692 1.18882 0.93147 0.90169 1.15088 1.20135 0.81349 0.87617 0.71044 1.90893 1.29732 1.75199 1.48531 1.84523 1.35594 1.26435 1.85238 1.26712 1.03217 1.02764 1.02866 1.84653 0.94818 0.96774 1.66839 0.92747 0.97992 0.97993 0.93533 0.93507 0.86492 0.86494 0.72334 0.82026 0.70419 0.78245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.29 13.29 21.45 0.28 -55.01 16 2 C 0.00 0.13 5.46 84.65 0.46 0.59 16 3 Si 0.96 44.15 29.54 68.60 2.03 46.18 16 4 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 5 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 6 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 7 C -0.54 -30.83 9.11 25.60 0.23 -30.59 16 8 H 0.05 2.97 7.74 -2.91 -0.02 2.94 16 9 C 0.02 1.19 4.97 29.85 0.15 1.34 16 10 C -0.08 -3.30 4.44 30.60 0.14 -3.16 16 11 C -0.12 -3.40 5.70 29.85 0.17 -3.23 16 12 C 0.51 13.64 7.80 87.66 0.68 14.33 16 13 O -0.54 -17.86 13.45 -3.10 -0.04 -17.90 16 14 N -0.63 -12.63 5.43 -307.06 -1.67 -14.29 16 15 C 0.00 0.10 7.10 82.35 0.59 0.68 16 16 C -0.14 -2.91 10.11 22.79 0.23 -2.68 16 17 C -0.16 -3.15 5.98 -19.89 -0.12 -3.27 16 18 C 0.55 10.98 8.30 70.12 0.58 11.56 16 19 O -0.55 -14.14 17.58 19.60 0.34 -13.80 16 20 O -0.50 -6.29 13.08 -57.18 -0.75 -7.04 16 21 C -0.22 -3.75 10.54 67.30 0.71 -3.04 16 22 S 0.31 6.53 20.07 -56.49 -1.13 5.39 16 23 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 24 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 25 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 26 H 0.05 1.92 8.10 -2.39 -0.02 1.90 16 27 H 0.05 1.93 8.10 -2.39 -0.02 1.91 16 28 H 0.12 2.76 8.14 -2.39 -0.02 2.75 16 29 H 0.12 2.76 8.14 -2.39 -0.02 2.74 16 30 H 0.44 5.72 8.80 -92.71 -0.82 4.90 16 31 H 0.16 2.95 8.06 -2.91 -0.02 2.92 16 32 H 0.43 1.41 9.11 -74.06 -0.67 0.73 16 33 H 0.20 2.40 8.01 -2.91 -0.02 2.37 16 Total: -1.00 -73.73 312.06 2.56 -71.17 By element: Atomic # 1 Polarization: 3.11 SS G_CDS: -0.33 Total: 2.78 kcal Atomic # 6 Polarization: -21.29 SS G_CDS: 3.82 Total: -17.47 kcal Atomic # 7 Polarization: -67.92 SS G_CDS: -1.38 Total: -69.30 kcal Atomic # 8 Polarization: -38.29 SS G_CDS: -0.44 Total: -38.74 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Atomic # 16 Polarization: 6.53 SS G_CDS: -1.13 Total: 5.39 kcal Total: -73.73 2.56 -71.17 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601064650.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.266 kcal (2) G-P(sol) polarization free energy of solvation -73.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds