Wall clock time and date at job start Tue Mar 31 2020 06:14:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86805 * 119.99723 * 2 1 4 4 H 1.48492 * 109.47291 * 269.99654 * 3 2 1 5 5 H 1.48493 * 109.47260 * 30.00077 * 3 2 1 6 6 H 1.48506 * 109.46944 * 149.99595 * 3 2 1 7 7 C 1.37877 * 120.00250 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00081 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99903 * 179.97438 * 7 2 1 10 10 C 1.53004 * 109.46981 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47206 * 180.02562 * 10 9 7 12 12 C 1.50695 * 109.47391 * 180.02562 * 11 10 9 13 13 O 1.21290 * 119.99914 * 359.97438 * 12 11 10 14 14 N 1.34769 * 120.00317 * 180.02562 * 12 11 10 15 15 C 1.38896 * 120.00112 * 180.02562 * 14 12 11 16 16 C 1.35884 * 124.62380 * 179.97438 * 15 14 12 17 17 C 1.37035 * 114.75263 * 179.97438 * 16 15 14 18 18 C 1.36921 * 113.47708 * 0.02562 * 17 16 15 19 19 C 1.41647 * 125.32094 * 179.97438 * 18 17 16 20 20 O 1.21692 * 120.00141 * 359.97438 * 19 18 17 21 21 O 1.34965 * 119.99808 * 180.02562 * 19 18 17 22 22 S 1.70614 * 124.62239 * 359.95325 * 15 14 12 23 23 H 0.97002 * 120.00008 * 0.02562 * 1 2 3 24 24 H 1.08996 * 109.47189 * 60.00443 * 9 7 2 25 25 H 1.08996 * 109.47640 * 300.00105 * 9 7 2 26 26 H 1.08996 * 109.47103 * 60.00016 * 10 9 7 27 27 H 1.09000 * 109.47190 * 300.00376 * 10 9 7 28 28 H 1.08996 * 109.47369 * 59.99821 * 11 10 9 29 29 H 1.09000 * 109.47060 * 300.00097 * 11 10 9 30 30 H 0.96998 * 119.99976 * 359.97438 * 14 12 11 31 31 H 1.07998 * 122.62332 * 0.23565 * 16 15 14 32 32 H 1.07995 * 123.25798 * 179.97438 * 17 16 15 33 33 H 0.96707 * 113.99748 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7002 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1939 0.0000 10 6 4.0216 -2.6364 0.0001 11 6 5.5516 -2.6364 0.0001 12 6 6.0540 -4.0571 -0.0004 13 8 5.2659 -4.9791 -0.0003 14 7 7.3790 -4.3034 0.0001 15 6 7.8420 -5.6129 -0.0009 16 6 9.1536 -5.9680 -0.0011 17 6 9.3822 -7.3192 -0.0016 18 6 8.2349 -8.0665 -0.0024 19 6 8.1795 -9.4819 -0.0036 20 8 9.2088 -10.1311 -0.0044 21 8 6.9852 -10.1104 -0.0049 22 16 6.8415 -6.9949 -0.0016 23 1 -0.4850 0.8401 -0.0004 24 1 3.8752 -0.6796 0.8894 25 1 3.8746 -0.6807 -0.8904 26 1 3.6579 -3.1505 -0.8896 27 1 3.6586 -3.1501 0.8903 28 1 5.9149 -2.1225 0.8900 29 1 5.9149 -2.1226 -0.8899 30 1 8.0093 -3.5661 0.0004 31 1 9.9534 -5.2422 0.0034 32 1 10.3714 -7.7525 -0.0021 33 1 7.0486 -11.0754 -0.0060 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601064872.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:26 Heat of formation + Delta-G solvation = -108.980874 kcal Electronic energy + Delta-G solvation = -18574.422149 eV Core-core repulsion = 15305.397194 eV Total energy + Delta-G solvation = -3269.024955 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.56519 -40.37179 -38.01163 -36.19014 -34.93413 -34.54881 -32.24994 -29.97367 -28.49703 -25.69319 -23.75591 -22.88746 -21.30936 -20.29396 -19.80998 -18.81676 -17.97318 -17.30261 -16.74521 -16.15549 -16.03452 -15.82367 -15.63853 -14.51447 -14.26495 -14.06439 -13.87606 -13.38754 -13.18414 -12.77528 -12.52297 -12.15862 -11.90004 -11.78529 -11.31138 -11.14134 -11.06687 -10.94135 -10.89892 -10.14162 -10.00714 -9.84054 -9.70281 -9.24711 -8.80632 -8.58740 -8.34629 -6.07967 -4.06778 0.10614 1.06555 1.75963 1.77645 2.43389 2.61058 2.85299 3.10468 3.25468 3.33104 3.34599 4.39825 4.56520 4.77268 5.04838 5.19332 5.23926 5.24451 5.30132 5.38946 5.68241 5.81386 5.95961 6.02810 6.18879 6.36442 6.48642 6.75506 6.78781 7.22159 7.31378 7.63891 7.66065 7.73219 8.50043 8.98102 9.53395 11.05572 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.043627 B = 0.002877 C = 0.002706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.647646 B = 9729.801622 C =10345.702300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.066 3.934 3 Si 0.881 3.119 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.522 4.522 8 H 0.073 0.927 9 C -0.014 4.014 10 C -0.090 4.090 11 C -0.135 4.135 12 C 0.503 3.497 13 O -0.494 6.494 14 N -0.637 5.637 15 C 0.036 3.964 16 C -0.227 4.227 17 C -0.002 4.002 18 C -0.362 4.362 19 C 0.562 3.438 20 O -0.524 6.524 21 O -0.508 6.508 22 S 0.379 5.621 23 H 0.263 0.737 24 H 0.016 0.984 25 H 0.012 0.988 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.098 0.902 29 H 0.098 0.902 30 H 0.421 0.579 31 H 0.147 0.853 32 H 0.152 0.848 33 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.171 -12.268 0.021 23.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.136 4.136 3 Si 0.709 3.291 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.191 1.191 7 C -0.560 4.560 8 H 0.091 0.909 9 C -0.051 4.051 10 C -0.128 4.128 11 C -0.175 4.175 12 C 0.292 3.708 13 O -0.368 6.368 14 N -0.282 5.282 15 C -0.183 4.183 16 C -0.259 4.259 17 C -0.036 4.036 18 C -0.481 4.481 19 C 0.408 3.592 20 O -0.416 6.416 21 O -0.319 6.319 22 S 0.643 5.357 23 H 0.073 0.927 24 H 0.035 0.965 25 H 0.030 0.970 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.117 0.883 29 H 0.117 0.883 30 H 0.259 0.741 31 H 0.165 0.835 32 H 0.169 0.831 33 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges 18.030 -12.665 0.025 22.034 hybrid contribution 2.488 1.093 -0.022 2.718 sum 20.518 -11.573 0.003 23.556 Atomic orbital electron populations 1.69913 1.06328 1.26912 1.50947 1.25051 0.94746 0.99172 0.94600 0.86765 0.80282 0.83665 0.78436 1.20319 1.21386 1.19074 1.21121 0.89369 0.94612 1.50905 0.90867 1.19596 0.97517 0.91733 0.96255 1.21344 0.88334 1.00192 1.02962 1.21919 1.01328 0.89577 1.04671 1.21906 0.80248 0.94162 0.74447 1.90636 1.53773 1.45860 1.46507 1.43305 1.09020 1.04702 1.71138 1.22674 0.98947 0.92527 1.04192 1.19887 0.94138 0.96621 1.15216 1.20311 0.98461 0.91628 0.93176 1.23016 1.01788 0.95896 1.27362 1.18035 0.81264 0.87468 0.72411 1.90935 1.35105 1.67528 1.48077 1.85075 1.33212 1.27108 1.86456 1.84701 0.99986 0.87375 1.63660 0.92686 0.96542 0.96985 0.91705 0.91688 0.88331 0.88345 0.74076 0.83492 0.83085 0.73226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.56 13.96 55.43 0.77 -26.78 16 2 C 0.07 1.88 5.47 -17.82 -0.10 1.78 16 3 Si 0.88 20.93 27.47 -169.99 -4.67 16.26 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.27 -5.93 6.54 56.52 0.37 -5.56 16 7 C -0.52 -14.57 9.66 -34.44 -0.33 -14.90 16 8 H 0.07 2.23 7.99 -52.49 -0.42 1.81 16 9 C -0.01 -0.30 4.04 -27.88 -0.11 -0.42 16 10 C -0.09 -1.65 4.44 -26.73 -0.12 -1.77 16 11 C -0.14 -1.69 5.70 -27.89 -0.16 -1.85 16 12 C 0.50 6.35 7.79 -10.99 -0.09 6.26 16 13 O -0.49 -7.91 13.41 5.55 0.07 -7.84 16 14 N -0.64 -5.99 5.40 -11.81 -0.06 -6.05 16 15 C 0.04 0.38 7.00 -15.19 -0.11 0.28 16 16 C -0.23 -2.02 10.21 -40.86 -0.42 -2.43 16 17 C 0.00 -0.02 9.91 -40.50 -0.40 -0.42 16 18 C -0.36 -4.20 6.26 -38.76 -0.24 -4.44 16 19 C 0.56 6.66 8.08 32.03 0.26 6.92 16 20 O -0.52 -7.30 17.45 -19.41 -0.34 -7.64 16 21 O -0.51 -4.79 13.30 -41.22 -0.55 -5.34 16 22 S 0.38 4.56 19.76 -107.50 -2.12 2.43 16 23 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 24 H 0.02 0.36 7.20 -51.93 -0.37 -0.02 16 25 H 0.01 0.26 7.57 -51.93 -0.39 -0.14 16 26 H 0.06 1.26 8.10 -51.93 -0.42 0.84 16 27 H 0.06 1.26 8.10 -51.93 -0.42 0.84 16 28 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.42 2.40 8.80 -40.82 -0.36 2.04 16 31 H 0.15 0.90 8.06 -52.49 -0.42 0.48 16 32 H 0.15 1.32 8.01 -52.49 -0.42 0.90 16 33 H 0.41 1.92 8.98 45.56 0.41 2.33 16 LS Contribution 307.46 15.07 4.63 4.63 Total: -1.00 -34.99 307.46 -6.91 -41.90 By element: Atomic # 1 Polarization: 2.25 SS G_CDS: -2.83 Total: -0.58 kcal Atomic # 6 Polarization: -9.18 SS G_CDS: -1.81 Total: -10.99 kcal Atomic # 7 Polarization: -33.55 SS G_CDS: 0.71 Total: -32.84 kcal Atomic # 8 Polarization: -20.01 SS G_CDS: -0.81 Total: -20.82 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -4.67 Total: 16.26 kcal Atomic # 16 Polarization: 4.56 SS G_CDS: -2.12 Total: 2.43 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -34.99 -6.91 -41.90 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601064872.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.077 kcal (2) G-P(sol) polarization free energy of solvation -34.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds