Wall clock time and date at job start Tue Mar 31 2020 06:14:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86805 * 119.99723 * 2 1 4 4 H 1.48492 * 109.47291 * 269.99654 * 3 2 1 5 5 H 1.48493 * 109.47260 * 30.00077 * 3 2 1 6 6 H 1.48506 * 109.46944 * 149.99595 * 3 2 1 7 7 C 1.37877 * 120.00250 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00081 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99903 * 179.97438 * 7 2 1 10 10 C 1.53004 * 109.46981 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47206 * 180.02562 * 10 9 7 12 12 C 1.50695 * 109.47391 * 180.02562 * 11 10 9 13 13 O 1.21290 * 119.99914 * 359.97438 * 12 11 10 14 14 N 1.34769 * 120.00317 * 180.02562 * 12 11 10 15 15 C 1.38896 * 120.00112 * 180.02562 * 14 12 11 16 16 C 1.35884 * 124.62380 * 179.97438 * 15 14 12 17 17 C 1.37035 * 114.75263 * 179.97438 * 16 15 14 18 18 C 1.36921 * 113.47708 * 0.02562 * 17 16 15 19 19 C 1.41647 * 125.32094 * 179.97438 * 18 17 16 20 20 O 1.21692 * 120.00141 * 359.97438 * 19 18 17 21 21 O 1.34965 * 119.99808 * 180.02562 * 19 18 17 22 22 S 1.70614 * 124.62239 * 359.95325 * 15 14 12 23 23 H 0.97002 * 120.00008 * 0.02562 * 1 2 3 24 24 H 1.08996 * 109.47189 * 60.00443 * 9 7 2 25 25 H 1.08996 * 109.47640 * 300.00105 * 9 7 2 26 26 H 1.08996 * 109.47103 * 60.00016 * 10 9 7 27 27 H 1.09000 * 109.47190 * 300.00376 * 10 9 7 28 28 H 1.08996 * 109.47369 * 59.99821 * 11 10 9 29 29 H 1.09000 * 109.47060 * 300.00097 * 11 10 9 30 30 H 0.96998 * 119.99976 * 359.97438 * 14 12 11 31 31 H 1.07998 * 122.62332 * 0.23565 * 16 15 14 32 32 H 1.07995 * 123.25798 * 179.97438 * 17 16 15 33 33 H 0.96707 * 113.99748 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7002 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1939 0.0000 10 6 4.0216 -2.6364 0.0001 11 6 5.5516 -2.6364 0.0001 12 6 6.0540 -4.0571 -0.0004 13 8 5.2659 -4.9791 -0.0003 14 7 7.3790 -4.3034 0.0001 15 6 7.8420 -5.6129 -0.0009 16 6 9.1536 -5.9680 -0.0011 17 6 9.3822 -7.3192 -0.0016 18 6 8.2349 -8.0665 -0.0024 19 6 8.1795 -9.4819 -0.0036 20 8 9.2088 -10.1311 -0.0044 21 8 6.9852 -10.1104 -0.0049 22 16 6.8415 -6.9949 -0.0016 23 1 -0.4850 0.8401 -0.0004 24 1 3.8752 -0.6796 0.8894 25 1 3.8746 -0.6807 -0.8904 26 1 3.6579 -3.1505 -0.8896 27 1 3.6586 -3.1501 0.8903 28 1 5.9149 -2.1225 0.8900 29 1 5.9149 -2.1226 -0.8899 30 1 8.0093 -3.5661 0.0004 31 1 9.9534 -5.2422 0.0034 32 1 10.3714 -7.7525 -0.0021 33 1 7.0486 -11.0754 -0.0060 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601064872.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:25 Heat of formation + Delta-G solvation = -134.871992 kcal Electronic energy + Delta-G solvation = -18575.544872 eV Core-core repulsion = 15305.397194 eV Total energy + Delta-G solvation = -3270.147678 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.50296 -41.25419 -38.84790 -37.05887 -36.23318 -35.75945 -34.16533 -31.09405 -29.84131 -26.80154 -25.19892 -23.70070 -22.52967 -21.63265 -20.75526 -19.68708 -18.93637 -18.77988 -18.18685 -17.13802 -16.90033 -16.73705 -16.53744 -16.21385 -15.48196 -15.26571 -14.83350 -14.67699 -14.21244 -14.17021 -13.82613 -13.30103 -13.25753 -12.74423 -12.66732 -12.50879 -12.17337 -11.94894 -11.91633 -11.75539 -11.64316 -11.46925 -11.30504 -10.89642 -10.73296 -9.66238 -9.16869 -8.25913 -6.31579 -0.74409 0.23744 0.93077 0.94063 1.40572 1.43902 1.54674 1.55415 1.76057 2.01779 2.36629 2.40550 3.09821 3.64940 4.03744 4.09192 4.24344 4.30614 4.48429 4.59160 4.76161 4.90676 4.91134 4.97446 5.05602 5.19122 5.29920 5.46419 5.58529 5.62192 5.70002 6.07175 6.32419 6.78238 6.78946 6.87914 7.33047 8.91717 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.043627 B = 0.002877 C = 0.002706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.647646 B = 9729.801622 C =10345.702300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.959 5.959 2 C -0.005 4.005 3 Si 0.961 3.039 4 H -0.265 1.265 5 H -0.290 1.290 6 H -0.232 1.232 7 C -0.539 4.539 8 H 0.020 0.980 9 C -0.010 4.010 10 C -0.085 4.085 11 C -0.123 4.123 12 C 0.505 3.495 13 O -0.537 6.537 14 N -0.616 5.616 15 C 0.031 3.969 16 C -0.205 4.205 17 C 0.001 3.999 18 C -0.375 4.375 19 C 0.563 3.437 20 O -0.551 6.551 21 O -0.508 6.508 22 S 0.324 5.676 23 H 0.265 0.735 24 H 0.033 0.967 25 H 0.031 0.969 26 H 0.041 0.959 27 H 0.041 0.959 28 H 0.130 0.870 29 H 0.131 0.869 30 H 0.442 0.558 31 H 0.185 0.815 32 H 0.167 0.833 33 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.039 -10.254 0.033 26.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.201 4.201 3 Si 0.783 3.217 4 H -0.190 1.190 5 H -0.217 1.217 6 H -0.154 1.154 7 C -0.577 4.577 8 H 0.038 0.962 9 C -0.048 4.048 10 C -0.123 4.123 11 C -0.162 4.162 12 C 0.294 3.706 13 O -0.415 6.415 14 N -0.263 5.263 15 C -0.188 4.188 16 C -0.237 4.237 17 C -0.033 4.033 18 C -0.494 4.494 19 C 0.411 3.589 20 O -0.446 6.446 21 O -0.321 6.321 22 S 0.589 5.411 23 H 0.074 0.926 24 H 0.051 0.949 25 H 0.049 0.951 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.148 0.852 29 H 0.149 0.851 30 H 0.285 0.715 31 H 0.202 0.798 32 H 0.184 0.816 33 H 0.289 0.711 Dipole moment (debyes) X Y Z Total from point charges 21.941 -10.669 0.037 24.398 hybrid contribution 1.224 0.336 -0.029 1.269 sum 23.165 -10.333 0.009 25.365 Atomic orbital electron populations 1.70109 1.08792 1.28235 1.52823 1.26210 0.95700 1.04189 0.93988 0.85509 0.79795 0.77076 0.79309 1.19036 1.21666 1.15421 1.21583 0.92885 0.92764 1.50480 0.96160 1.19551 0.93290 0.94388 0.97549 1.21096 0.93041 0.97340 1.00855 1.21742 0.96509 0.90152 1.07769 1.21868 0.81007 0.93710 0.74004 1.90650 1.55227 1.46981 1.48593 1.42983 1.08275 1.05003 1.70011 1.22698 0.99009 0.92207 1.04901 1.20215 0.94185 0.96719 1.12544 1.20662 0.98622 0.92147 0.91826 1.23126 1.01973 0.95828 1.28428 1.18138 0.81301 0.87713 0.71756 1.90917 1.35911 1.68077 1.49711 1.85056 1.32237 1.28893 1.85878 1.84951 1.01578 0.89452 1.65146 0.92601 0.94899 0.95056 0.94016 0.94021 0.85186 0.85144 0.71531 0.79753 0.81590 0.71070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.62 13.96 21.45 0.30 -60.32 16 2 C -0.01 -0.29 5.47 84.66 0.46 0.17 16 3 Si 0.96 42.07 27.47 68.60 1.88 43.95 16 4 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 5 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 6 H -0.23 -8.80 6.54 99.48 0.65 -8.15 16 7 C -0.54 -30.89 9.66 25.60 0.25 -30.64 16 8 H 0.02 1.31 7.99 -2.91 -0.02 1.29 16 9 C -0.01 -0.44 4.04 29.85 0.12 -0.32 16 10 C -0.09 -3.07 4.44 30.60 0.14 -2.93 16 11 C -0.12 -2.64 5.70 29.85 0.17 -2.47 16 12 C 0.50 11.67 7.79 87.66 0.68 12.35 16 13 O -0.54 -17.29 13.41 -3.06 -0.04 -17.34 16 14 N -0.62 -9.50 5.40 -309.66 -1.67 -11.17 16 15 C 0.03 0.58 7.00 83.03 0.58 1.16 16 16 C -0.21 -2.89 10.21 21.44 0.22 -2.67 16 17 C 0.00 0.02 9.91 21.68 0.21 0.24 16 18 C -0.38 -8.40 6.26 22.80 0.14 -8.25 16 19 C 0.56 13.21 8.08 68.66 0.55 13.77 16 20 O -0.55 -15.15 17.45 19.21 0.34 -14.82 16 21 O -0.51 -9.59 13.30 -58.82 -0.78 -10.37 16 22 S 0.32 7.77 19.76 -56.49 -1.12 6.65 16 23 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 24 H 0.03 1.30 7.20 -2.39 -0.02 1.29 16 25 H 0.03 1.22 7.57 -2.39 -0.02 1.21 16 26 H 0.04 1.66 8.10 -2.39 -0.02 1.64 16 27 H 0.04 1.66 8.10 -2.39 -0.02 1.64 16 28 H 0.13 2.06 8.14 -2.39 -0.02 2.04 16 29 H 0.13 2.05 8.14 -2.39 -0.02 2.04 16 30 H 0.44 2.84 8.80 -92.71 -0.82 2.02 16 31 H 0.19 1.22 8.06 -2.91 -0.02 1.19 16 32 H 0.17 2.43 8.01 -2.91 -0.02 2.41 16 33 H 0.43 3.91 8.98 -74.05 -0.67 3.25 16 Total: -1.00 -80.83 307.46 2.07 -78.76 By element: Atomic # 1 Polarization: 4.62 SS G_CDS: -0.37 Total: 4.25 kcal Atomic # 6 Polarization: -23.14 SS G_CDS: 3.53 Total: -19.61 kcal Atomic # 7 Polarization: -70.12 SS G_CDS: -1.37 Total: -71.49 kcal Atomic # 8 Polarization: -42.03 SS G_CDS: -0.49 Total: -42.52 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 1.88 Total: 43.95 kcal Atomic # 16 Polarization: 7.77 SS G_CDS: -1.12 Total: 6.65 kcal Total: -80.83 2.07 -78.76 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601064872.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.113 kcal (2) G-P(sol) polarization free energy of solvation -80.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds