Wall clock time and date at job start Tue Mar 31 2020 06:13:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 120.00018 * 2 1 4 4 H 1.48510 * 109.46907 * 239.99759 * 3 2 1 5 5 H 1.48493 * 109.47158 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47148 * 119.99947 * 3 2 1 7 7 C 1.37879 * 120.00343 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00480 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99655 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.47206 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47141 * 180.02562 * 10 9 7 12 12 O 1.21281 * 120.00120 * 359.97438 * 11 10 9 13 13 N 1.34778 * 119.99854 * 179.97438 * 11 10 9 14 14 C 1.46501 * 119.99889 * 179.97438 * 13 11 10 15 15 C 1.50698 * 109.46982 * 180.02562 * 14 13 11 16 16 C 1.33858 * 124.52024 * 89.99988 * 15 14 13 17 17 C 1.37415 * 115.11391 * 179.97438 * 16 15 14 18 18 C 1.36752 * 113.28549 * 0.02562 * 17 16 15 19 19 C 1.46398 * 125.46315 * 180.02562 * 18 17 16 20 20 O 1.21622 * 119.99934 * 359.97438 * 19 18 17 21 21 O 1.34901 * 119.99619 * 179.97438 * 19 18 17 22 22 S 1.70621 * 124.51944 * 269.95657 * 15 14 13 23 23 H 0.97003 * 119.99994 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.46898 * 59.99949 * 9 7 2 25 25 H 1.08999 * 109.47175 * 300.00363 * 9 7 2 26 26 H 1.09000 * 109.47587 * 59.99939 * 10 9 7 27 27 H 1.09007 * 109.46761 * 299.99761 * 10 9 7 28 28 H 0.97001 * 119.99837 * 359.97438 * 13 11 10 29 29 H 1.08998 * 109.47163 * 60.00237 * 14 13 11 30 30 H 1.09007 * 109.47044 * 299.99779 * 14 13 11 31 31 H 1.08003 * 122.44823 * 359.97438 * 16 15 14 32 32 H 1.07995 * 123.35992 * 179.73247 * 17 16 15 33 33 H 0.96707 * 116.99434 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2452 -3.6621 0.0027 11 6 1.4917 -4.9672 0.0033 12 8 0.2789 -4.9672 0.0033 13 7 2.1656 -6.1344 0.0037 14 6 1.4331 -7.4031 0.0048 15 6 2.4124 -8.5485 0.0057 16 6 2.9054 -9.1242 1.1090 17 6 3.7860 -10.1551 0.8852 18 6 3.9991 -10.4055 -0.4422 19 6 4.8830 -11.4413 -0.9799 20 8 5.5018 -12.1653 -0.2236 21 8 5.0109 -11.5926 -2.3143 22 16 3.0399 -9.2853 -1.3996 23 1 -0.4850 0.8401 -0.0004 24 1 0.6240 -2.5574 -0.8880 25 1 0.6247 -2.5563 0.8919 26 1 2.8719 -3.6036 0.8926 27 1 2.8719 -3.6051 -0.8874 28 1 3.1356 -6.1343 0.0033 29 1 0.8061 -7.4614 -0.8849 30 1 0.8068 -7.4603 0.8951 31 1 2.6312 -8.8019 2.1027 32 1 4.2657 -10.7091 1.6785 33 1 5.6064 -12.2898 -2.6219 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601066375.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:43 Heat of formation + Delta-G solvation = -108.289645 kcal Electronic energy + Delta-G solvation = -18337.582505 eV Core-core repulsion = 15068.587523 eV Total energy + Delta-G solvation = -3268.994981 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.50828 -39.38880 -38.23099 -36.45384 -34.73568 -33.47620 -31.42382 -30.57616 -27.65641 -25.64138 -23.96443 -22.87432 -21.57229 -19.90127 -19.52834 -19.00696 -17.72004 -16.86072 -16.42209 -16.12276 -15.82878 -15.69880 -15.17811 -14.68694 -14.43979 -13.82621 -13.48841 -13.40764 -13.08657 -12.65263 -12.57913 -12.17946 -12.02515 -11.96637 -11.33841 -11.19455 -11.10589 -10.92264 -10.63703 -9.98334 -9.72680 -9.54296 -9.17323 -9.03382 -8.97828 -8.93045 -8.33439 -5.97596 -4.02214 -0.13159 0.98341 1.47277 1.74635 2.50332 2.54492 3.15740 3.33574 3.38241 3.39664 3.54402 4.22834 4.46385 4.73919 4.77272 4.92865 5.25125 5.35317 5.37343 5.59823 5.66941 5.68980 5.89424 5.96994 6.18520 6.20093 6.51523 6.84987 7.38983 7.71664 7.75490 7.83384 8.04913 8.36094 8.67052 9.05938 9.61433 11.13288 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.037441 B = 0.002613 C = 0.002551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.666131 B =10711.057960 C =10973.427837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.529 4.529 8 H 0.055 0.945 9 C 0.037 3.963 10 C -0.129 4.129 11 C 0.512 3.488 12 O -0.531 6.531 13 N -0.742 5.742 14 C 0.186 3.814 15 C -0.208 4.208 16 C -0.140 4.140 17 C -0.038 4.038 18 C -0.275 4.275 19 C 0.561 3.439 20 O -0.508 6.508 21 O -0.513 6.513 22 S 0.275 5.725 23 H 0.262 0.738 24 H 0.024 0.976 25 H 0.024 0.976 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.400 0.600 29 H 0.079 0.921 30 H 0.088 0.912 31 H 0.153 0.847 32 H 0.157 0.843 33 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.380 -23.680 -2.307 25.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.567 4.567 8 H 0.074 0.926 9 C -0.001 4.001 10 C -0.169 4.169 11 C 0.301 3.699 12 O -0.406 6.406 13 N -0.398 5.398 14 C 0.061 3.939 15 C -0.328 4.328 16 C -0.171 4.171 17 C -0.072 4.072 18 C -0.394 4.394 19 C 0.404 3.596 20 O -0.398 6.398 21 O -0.325 6.325 22 S 0.546 5.454 23 H 0.071 0.929 24 H 0.042 0.958 25 H 0.042 0.958 26 H 0.099 0.901 27 H 0.099 0.901 28 H 0.234 0.766 29 H 0.097 0.903 30 H 0.106 0.894 31 H 0.170 0.830 32 H 0.174 0.826 33 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges 7.983 -23.180 -3.564 24.774 hybrid contribution 1.541 0.133 1.451 2.121 sum 9.524 -23.047 -2.113 25.027 Atomic orbital electron populations 1.69982 1.06063 1.26740 1.50045 1.25023 0.94830 0.99236 0.95268 0.86647 0.79545 0.83145 0.78557 1.20240 1.21278 1.20242 1.21180 0.92903 0.91001 1.51603 0.92636 1.18903 0.93160 0.89333 0.98658 1.21883 1.00762 0.91607 1.02648 1.21644 0.88676 0.85420 0.74209 1.90685 1.14416 1.87489 1.48025 1.46316 1.10221 1.04739 1.78533 1.19662 0.91060 0.79266 1.03912 1.24633 1.05282 1.04096 0.98831 1.20054 0.99438 0.97433 1.00219 1.20788 0.95794 0.95994 0.94620 1.23545 1.10972 1.06731 0.98146 1.19305 0.78826 0.81292 0.80172 1.90954 1.44986 1.44438 1.59433 1.84600 1.65680 1.58153 1.24066 1.83443 1.33984 1.22570 1.05422 0.92863 0.95781 0.95799 0.90092 0.90101 0.76626 0.90286 0.89378 0.82987 0.82577 0.72219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.23 13.29 55.43 0.74 -26.49 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.53 -14.82 9.11 -34.44 -0.31 -15.14 16 8 H 0.06 1.46 7.74 -52.49 -0.41 1.06 16 9 C 0.04 0.98 4.26 -27.88 -0.12 0.86 16 10 C -0.13 -2.52 5.64 -27.88 -0.16 -2.68 16 11 C 0.51 9.32 7.83 -10.98 -0.09 9.24 16 12 O -0.53 -11.99 15.98 5.56 0.09 -11.90 16 13 N -0.74 -9.60 5.55 -61.47 -0.34 -9.94 16 14 C 0.19 2.08 6.10 -5.19 -0.03 2.04 16 15 C -0.21 -1.86 5.65 -35.85 -0.20 -2.06 16 16 C -0.14 -1.14 9.99 -41.42 -0.41 -1.55 16 17 C -0.04 -0.31 10.01 -40.42 -0.40 -0.72 16 18 C -0.28 -2.49 6.45 -36.84 -0.24 -2.73 16 19 C 0.56 5.24 8.30 34.01 0.28 5.52 16 20 O -0.51 -6.03 17.63 -19.36 -0.34 -6.37 16 21 O -0.51 -3.36 13.29 -41.04 -0.55 -3.91 16 22 S 0.28 2.29 22.87 -107.50 -2.46 -0.17 16 23 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 24 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 25 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 26 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 27 H 0.08 1.44 8.14 -51.93 -0.42 1.01 16 28 H 0.40 4.17 8.46 -40.82 -0.35 3.82 16 29 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 30 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.15 1.04 8.06 -52.48 -0.42 0.62 16 32 H 0.16 1.14 8.06 -52.49 -0.42 0.71 16 33 H 0.42 0.79 9.11 45.56 0.42 1.20 16 LS Contribution 316.77 15.07 4.77 4.77 Total: -1.00 -35.83 316.77 -7.74 -43.57 By element: Atomic # 1 Polarization: 2.44 SS G_CDS: -2.85 Total: -0.41 kcal Atomic # 6 Polarization: -3.85 SS G_CDS: -1.78 Total: -5.64 kcal Atomic # 7 Polarization: -36.83 SS G_CDS: 0.40 Total: -36.43 kcal Atomic # 8 Polarization: -21.38 SS G_CDS: -0.80 Total: -22.18 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: 2.29 SS G_CDS: -2.46 Total: -0.17 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -35.83 -7.74 -43.57 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601066375.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.717 kcal (2) G-P(sol) polarization free energy of solvation -35.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds