Wall clock time and date at job start Tue Mar 31 2020 06:13:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 120.00018 * 2 1 4 4 H 1.48510 * 109.46907 * 239.99759 * 3 2 1 5 5 H 1.48493 * 109.47158 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47148 * 119.99947 * 3 2 1 7 7 C 1.37879 * 120.00343 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00480 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99655 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.47206 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47141 * 180.02562 * 10 9 7 12 12 O 1.21281 * 120.00120 * 359.97438 * 11 10 9 13 13 N 1.34778 * 119.99854 * 179.97438 * 11 10 9 14 14 C 1.46501 * 119.99889 * 179.97438 * 13 11 10 15 15 C 1.50698 * 109.46982 * 180.02562 * 14 13 11 16 16 C 1.33858 * 124.52024 * 89.99988 * 15 14 13 17 17 C 1.37415 * 115.11391 * 179.97438 * 16 15 14 18 18 C 1.36752 * 113.28549 * 0.02562 * 17 16 15 19 19 C 1.46398 * 125.46315 * 180.02562 * 18 17 16 20 20 O 1.21622 * 119.99934 * 359.97438 * 19 18 17 21 21 O 1.34901 * 119.99619 * 179.97438 * 19 18 17 22 22 S 1.70621 * 124.51944 * 269.95657 * 15 14 13 23 23 H 0.97003 * 119.99994 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.46898 * 59.99949 * 9 7 2 25 25 H 1.08999 * 109.47175 * 300.00363 * 9 7 2 26 26 H 1.09000 * 109.47587 * 59.99939 * 10 9 7 27 27 H 1.09007 * 109.46761 * 299.99761 * 10 9 7 28 28 H 0.97001 * 119.99837 * 359.97438 * 13 11 10 29 29 H 1.08998 * 109.47163 * 60.00237 * 14 13 11 30 30 H 1.09007 * 109.47044 * 299.99779 * 14 13 11 31 31 H 1.08003 * 122.44823 * 359.97438 * 16 15 14 32 32 H 1.07995 * 123.35992 * 179.73247 * 17 16 15 33 33 H 0.96707 * 116.99434 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2452 -3.6621 0.0027 11 6 1.4917 -4.9672 0.0033 12 8 0.2789 -4.9672 0.0033 13 7 2.1656 -6.1344 0.0037 14 6 1.4331 -7.4031 0.0048 15 6 2.4124 -8.5485 0.0057 16 6 2.9054 -9.1242 1.1090 17 6 3.7860 -10.1551 0.8852 18 6 3.9991 -10.4055 -0.4422 19 6 4.8830 -11.4413 -0.9799 20 8 5.5018 -12.1653 -0.2236 21 8 5.0109 -11.5926 -2.3143 22 16 3.0399 -9.2853 -1.3996 23 1 -0.4850 0.8401 -0.0004 24 1 0.6240 -2.5574 -0.8880 25 1 0.6247 -2.5563 0.8919 26 1 2.8719 -3.6036 0.8926 27 1 2.8719 -3.6051 -0.8874 28 1 3.1356 -6.1343 0.0033 29 1 0.8061 -7.4614 -0.8849 30 1 0.8068 -7.4603 0.8951 31 1 2.6312 -8.8019 2.1027 32 1 4.2657 -10.7091 1.6785 33 1 5.6064 -12.2898 -2.6219 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601066375.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:43 Heat of formation + Delta-G solvation = -134.649106 kcal Electronic energy + Delta-G solvation = -18338.725537 eV Core-core repulsion = 15068.587523 eV Total energy + Delta-G solvation = -3270.138013 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.19274 -40.74171 -39.02648 -37.11852 -35.94423 -35.49796 -33.11192 -31.74528 -28.73086 -27.31329 -24.96138 -23.60733 -23.28203 -21.30409 -20.22753 -19.75489 -18.86140 -18.34668 -17.40357 -17.15739 -16.95456 -16.76098 -16.51110 -16.40419 -15.54096 -14.88240 -14.73694 -14.28501 -14.21715 -13.97487 -13.82775 -13.38114 -13.20930 -13.09566 -12.75700 -12.68247 -12.50157 -12.05971 -11.88488 -11.81055 -11.62435 -11.30731 -10.88548 -10.54564 -10.15997 -9.98762 -9.63775 -8.16408 -6.30157 -0.82953 0.30705 0.80267 1.05772 1.43547 1.47608 1.55321 1.70371 1.81969 1.98470 2.33414 2.47917 3.16683 3.42381 3.99520 4.11020 4.13008 4.30387 4.47154 4.52707 4.59423 4.64435 4.96718 5.01349 5.10379 5.23878 5.35383 5.44775 5.52511 5.66252 5.87713 6.19625 6.54944 6.84940 6.88415 7.30606 7.40095 8.95931 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.037441 B = 0.002613 C = 0.002551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.666131 B =10711.057960 C =10973.427837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.007 4.007 3 Si 0.972 3.028 4 H -0.263 1.263 5 H -0.289 1.289 6 H -0.263 1.263 7 C -0.544 4.544 8 H 0.076 0.924 9 C 0.041 3.959 10 C -0.120 4.120 11 C 0.516 3.484 12 O -0.584 6.584 13 N -0.717 5.717 14 C 0.188 3.812 15 C -0.217 4.217 16 C -0.130 4.130 17 C -0.038 4.038 18 C -0.287 4.287 19 C 0.565 3.435 20 O -0.539 6.539 21 O -0.507 6.507 22 S 0.295 5.705 23 H 0.263 0.737 24 H -0.016 1.016 25 H -0.017 1.017 26 H 0.105 0.895 27 H 0.105 0.895 28 H 0.416 0.584 29 H 0.075 0.925 30 H 0.087 0.913 31 H 0.166 0.834 32 H 0.166 0.834 33 H 0.438 0.562 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.786 -24.142 -2.431 26.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.204 4.204 3 Si 0.796 3.204 4 H -0.187 1.187 5 H -0.214 1.214 6 H -0.187 1.187 7 C -0.582 4.582 8 H 0.094 0.906 9 C 0.004 3.996 10 C -0.159 4.159 11 C 0.305 3.695 12 O -0.464 6.464 13 N -0.372 5.372 14 C 0.063 3.937 15 C -0.338 4.338 16 C -0.161 4.161 17 C -0.073 4.073 18 C -0.406 4.406 19 C 0.409 3.591 20 O -0.432 6.432 21 O -0.322 6.322 22 S 0.566 5.434 23 H 0.071 0.929 24 H 0.002 0.998 25 H 0.002 0.998 26 H 0.123 0.877 27 H 0.123 0.877 28 H 0.253 0.747 29 H 0.093 0.907 30 H 0.105 0.895 31 H 0.184 0.816 32 H 0.183 0.817 33 H 0.301 0.699 Dipole moment (debyes) X Y Z Total from point charges 10.462 -23.696 -3.721 26.169 hybrid contribution 0.802 0.162 1.444 1.660 sum 11.264 -23.534 -2.276 26.190 Atomic orbital electron populations 1.70164 1.08265 1.27841 1.51475 1.26118 0.95709 1.03881 0.94706 0.85400 0.78070 0.77482 0.79450 1.18729 1.21427 1.18737 1.21701 0.94006 0.91675 1.50773 0.90623 1.18696 0.93743 0.92383 0.94826 1.21646 0.99340 0.89954 1.04991 1.21299 0.87778 0.86457 0.74005 1.90674 1.16536 1.88256 1.50884 1.45979 1.10998 1.04073 1.76126 1.19656 0.91436 0.78814 1.03782 1.24385 1.05702 1.03984 0.99708 1.20193 0.98546 0.96766 1.00629 1.20943 0.95655 0.95946 0.94740 1.23736 1.11154 1.06994 0.98730 1.19351 0.78250 0.80800 0.80666 1.90944 1.46317 1.45637 1.60292 1.84565 1.66076 1.58968 1.22559 1.83381 1.33348 1.21986 1.04641 0.92875 0.99804 0.99821 0.87650 0.87663 0.74684 0.90666 0.89510 0.81621 0.81653 0.69903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.02 13.29 21.45 0.28 -58.74 16 2 C -0.01 -0.38 5.46 84.66 0.46 0.08 16 3 Si 0.97 43.84 29.54 68.60 2.03 45.86 16 4 H -0.26 -11.17 7.11 99.48 0.71 -10.47 16 5 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 6 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 7 C -0.54 -30.49 9.11 25.60 0.23 -30.25 16 8 H 0.08 3.84 7.74 -2.91 -0.02 3.82 16 9 C 0.04 2.24 4.26 29.85 0.13 2.37 16 10 C -0.12 -4.57 5.64 29.85 0.17 -4.40 16 11 C 0.52 18.61 7.83 87.66 0.69 19.29 16 12 O -0.58 -27.15 15.98 -3.03 -0.05 -27.20 16 13 N -0.72 -17.31 5.55 -466.78 -2.59 -19.90 16 14 C 0.19 3.93 6.10 85.63 0.52 4.46 16 15 C -0.22 -3.45 5.65 24.69 0.14 -3.31 16 16 C -0.13 -1.80 9.99 21.08 0.21 -1.59 16 17 C -0.04 -0.56 10.01 21.73 0.22 -0.34 16 18 C -0.29 -4.65 6.45 24.05 0.16 -4.50 16 19 C 0.56 9.64 8.30 69.95 0.58 10.22 16 20 O -0.54 -12.20 17.63 19.44 0.34 -11.86 16 21 O -0.51 -5.64 13.29 -58.15 -0.77 -6.41 16 22 S 0.30 4.32 22.87 -56.49 -1.29 3.02 16 23 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 24 H -0.02 -1.02 8.10 -2.39 -0.02 -1.04 16 25 H -0.02 -1.03 8.10 -2.39 -0.02 -1.05 16 26 H 0.11 3.51 8.14 -2.39 -0.02 3.49 16 27 H 0.11 3.51 8.14 -2.38 -0.02 3.49 16 28 H 0.42 7.48 8.46 -92.71 -0.78 6.69 16 29 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.09 1.90 8.14 -2.38 -0.02 1.88 16 31 H 0.17 1.84 8.06 -2.91 -0.02 1.81 16 32 H 0.17 2.09 8.06 -2.91 -0.02 2.06 16 33 H 0.44 0.76 9.11 -74.05 -0.67 0.08 16 Total: -1.00 -79.87 316.77 1.16 -78.71 By element: Atomic # 1 Polarization: 4.77 SS G_CDS: -0.30 Total: 4.47 kcal Atomic # 6 Polarization: -11.47 SS G_CDS: 3.50 Total: -7.97 kcal Atomic # 7 Polarization: -76.33 SS G_CDS: -2.30 Total: -78.64 kcal Atomic # 8 Polarization: -44.99 SS G_CDS: -0.48 Total: -45.47 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.86 kcal Atomic # 16 Polarization: 4.32 SS G_CDS: -1.29 Total: 3.02 kcal Total: -79.87 1.16 -78.71 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601066375.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.939 kcal (2) G-P(sol) polarization free energy of solvation -79.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds