Wall clock time and date at job start Tue Mar 31 2020 06:15:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86807 * 120.00265 * 2 1 4 4 H 1.48496 * 109.46976 * 270.00188 * 3 2 1 5 5 H 1.48496 * 109.46914 * 30.00012 * 3 2 1 6 6 H 1.48495 * 109.47210 * 149.99898 * 3 2 1 7 7 C 1.37884 * 120.00267 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00207 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99380 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.47154 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.47482 * 180.02562 * 10 9 7 12 12 O 1.21282 * 119.99847 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00159 * 180.02562 * 11 10 9 14 14 C 1.46493 * 119.99992 * 179.97438 * 13 11 10 15 15 H 1.09006 * 109.47385 * 35.00131 * 14 13 11 16 16 C 1.50695 * 109.47312 * 275.00001 * 14 13 11 17 17 O 1.20821 * 119.99860 * 359.97438 * 16 14 13 18 18 O 1.34232 * 120.00242 * 180.02562 * 16 14 13 19 19 C 1.50706 * 109.47146 * 154.99690 * 14 13 11 20 20 C 1.38421 * 122.54153 * 219.73826 * 19 14 13 21 21 C 1.33385 * 114.92097 * 179.76283 * 20 19 14 22 22 S 1.75888 * 109.59417 * 0.47538 * 21 20 19 23 23 C 1.33388 * 122.53725 * 40.02568 * 19 14 13 24 24 H 0.97000 * 119.99675 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.47638 * 59.99951 * 9 7 2 26 26 H 1.09001 * 109.47825 * 299.99979 * 9 7 2 27 27 H 1.09002 * 109.46860 * 59.99508 * 10 9 7 28 28 H 1.09000 * 109.46660 * 300.00118 * 10 9 7 29 29 H 0.97006 * 119.99595 * 359.97438 * 13 11 10 30 30 H 0.96692 * 117.00325 * 179.97438 * 18 16 14 31 31 H 1.08005 * 122.53740 * 359.97438 * 20 19 14 32 32 H 1.07997 * 125.21048 * 180.20968 * 21 20 19 33 33 H 1.08004 * 125.20510 * 359.97438 * 23 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 6 1.4917 -4.9672 -0.0025 12 8 0.2789 -4.9672 -0.0015 13 7 2.1655 -6.1344 -0.0031 14 6 1.4330 -7.4031 -0.0031 15 1 0.5220 -7.2967 -0.5922 16 6 1.0752 -7.7766 1.4123 17 8 1.3993 -7.0572 2.3272 18 8 0.3974 -8.9091 1.6566 19 6 2.2968 -8.4818 -0.6044 20 6 1.7924 -9.4541 -1.4508 21 6 2.6922 -10.3309 -1.8989 22 16 4.2726 -9.9495 -1.2277 23 6 3.6041 -8.5754 -0.3568 24 1 -0.4850 0.8401 -0.0004 25 1 0.6240 -2.5567 -0.8903 26 1 0.6246 -2.5571 0.8897 27 1 2.8726 -3.6047 0.8877 28 1 2.8711 -3.6039 -0.8923 29 1 3.1356 -6.1344 -0.0035 30 1 0.1910 -9.1066 2.5804 31 1 0.7500 -9.4973 -1.7301 32 1 2.4818 -11.1522 -2.5679 33 1 4.1663 -7.9090 0.2807 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601066581.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:52 Heat of formation + Delta-G solvation = -97.177115 kcal Electronic energy + Delta-G solvation = -19390.449362 eV Core-core repulsion = 16121.936256 eV Total energy + Delta-G solvation = -3268.513106 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.81082 -39.04219 -38.24670 -36.16694 -34.34203 -33.45251 -31.20919 -30.04511 -28.26996 -25.57524 -23.90019 -22.43276 -21.01184 -20.02040 -19.22066 -18.15220 -18.00631 -17.02371 -16.75961 -16.23078 -15.77179 -15.43871 -14.73514 -14.45033 -14.32619 -13.61587 -13.45135 -13.08062 -13.02117 -12.81630 -12.38298 -12.17688 -12.14929 -11.55819 -11.16389 -11.11595 -10.92248 -10.81128 -10.58752 -9.95098 -9.69388 -9.34735 -9.15376 -9.14023 -9.04171 -8.73754 -8.30471 -5.94455 -3.98770 0.61946 1.27921 1.60957 2.10205 2.29309 2.65504 3.24087 3.34904 3.40909 3.43753 3.62878 4.37412 4.49126 4.61737 4.90417 5.02360 5.18485 5.28557 5.40617 5.53080 5.68811 5.93166 6.02827 6.21191 6.24247 6.40415 6.42345 6.87401 7.68026 7.76033 7.83109 7.87342 8.08365 8.38829 8.64183 9.09285 9.64626 11.16558 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.026035 B = 0.003526 C = 0.003289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.198670 B = 7938.433285 C = 8511.520154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.527 4.527 8 H 0.056 0.944 9 C 0.037 3.963 10 C -0.127 4.127 11 C 0.519 3.481 12 O -0.528 6.528 13 N -0.721 5.721 14 C 0.220 3.780 15 H 0.134 0.866 16 C 0.470 3.530 17 O -0.496 6.496 18 O -0.513 6.513 19 C -0.105 4.105 20 C -0.114 4.114 21 C -0.211 4.211 22 S 0.116 5.884 23 C -0.201 4.201 24 H 0.261 0.739 25 H 0.024 0.976 26 H 0.024 0.976 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.404 0.596 30 H 0.408 0.592 31 H 0.148 0.852 32 H 0.169 0.831 33 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.544 -24.201 -2.380 25.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.565 4.565 8 H 0.074 0.926 9 C -0.001 4.001 10 C -0.167 4.167 11 C 0.309 3.691 12 O -0.402 6.402 13 N -0.377 5.377 14 C 0.109 3.891 15 H 0.151 0.849 16 C 0.309 3.691 17 O -0.382 6.382 18 O -0.325 6.325 19 C -0.119 4.119 20 C -0.144 4.144 21 C -0.346 4.346 22 S 0.380 5.620 23 C -0.338 4.338 24 H 0.070 0.930 25 H 0.043 0.957 26 H 0.043 0.957 27 H 0.102 0.898 28 H 0.101 0.899 29 H 0.239 0.761 30 H 0.267 0.733 31 H 0.166 0.834 32 H 0.186 0.814 33 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 8.130 -24.411 -2.669 25.867 hybrid contribution -0.639 1.358 0.854 1.727 sum 7.491 -23.052 -1.815 24.307 Atomic orbital electron populations 1.69998 1.06063 1.26578 1.50188 1.25024 0.94826 0.99229 0.95295 0.86581 0.79784 0.83489 0.78041 1.20670 1.21236 1.19878 1.21210 0.92948 0.90950 1.51407 0.92551 1.18918 0.93171 0.89297 0.98711 1.21881 1.00828 0.91202 1.02789 1.21724 0.88726 0.85394 0.73291 1.90676 1.14434 1.87359 1.47724 1.46089 1.10142 1.03613 1.77850 1.18659 0.97413 0.83547 0.89443 0.84850 1.23941 0.74329 0.78002 0.92861 1.90751 1.50541 1.50668 1.46236 1.84515 1.69614 1.41799 1.36534 1.18547 0.93399 0.98407 1.01536 1.19982 1.01512 0.94558 0.98318 1.25609 0.95710 1.05621 1.07671 1.84322 1.10782 1.24156 1.42742 1.25533 0.98059 1.03414 1.06765 0.92954 0.95734 0.95727 0.89840 0.89921 0.76079 0.73336 0.83401 0.81400 0.81496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.65 13.29 55.43 0.74 -26.91 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 6 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 7 C -0.53 -15.08 9.11 -34.44 -0.31 -15.40 16 8 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 9 C 0.04 1.00 4.26 -27.88 -0.12 0.88 16 10 C -0.13 -2.62 5.64 -27.88 -0.16 -2.78 16 11 C 0.52 10.16 7.66 -10.99 -0.08 10.08 16 12 O -0.53 -12.46 15.65 5.56 0.09 -12.37 16 13 N -0.72 -10.48 4.57 -56.07 -0.26 -10.74 16 14 C 0.22 2.87 2.77 -70.24 -0.19 2.67 16 15 H 0.13 1.81 7.52 -51.93 -0.39 1.42 16 16 C 0.47 6.61 7.65 36.00 0.28 6.88 16 17 O -0.50 -8.76 17.08 -18.75 -0.32 -9.08 16 18 O -0.51 -5.43 13.34 -39.26 -0.52 -5.96 16 19 C -0.11 -1.07 4.78 -106.25 -0.51 -1.58 16 20 C -0.11 -0.99 9.95 -41.21 -0.41 -1.40 16 21 C -0.21 -1.56 11.23 29.04 0.33 -1.23 16 22 S 0.12 0.87 23.34 -107.50 -2.51 -1.64 16 23 C -0.20 -1.82 10.21 29.04 0.30 -1.52 16 24 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 25 H 0.02 0.72 8.10 -51.93 -0.42 0.30 16 26 H 0.02 0.74 8.10 -51.93 -0.42 0.32 16 27 H 0.08 1.61 8.14 -51.93 -0.42 1.18 16 28 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 29 H 0.40 4.68 7.21 -40.82 -0.29 4.39 16 30 H 0.41 2.67 9.10 45.56 0.41 3.08 16 31 H 0.15 1.10 8.06 -52.48 -0.42 0.68 16 32 H 0.17 0.84 8.06 -52.49 -0.42 0.41 16 33 H 0.17 1.32 7.33 -52.48 -0.38 0.94 16 LS Contribution 312.65 15.07 4.71 4.71 Total: -1.00 -36.97 312.65 -6.81 -43.78 By element: Atomic # 1 Polarization: 5.92 SS G_CDS: -2.73 Total: 3.19 kcal Atomic # 6 Polarization: -0.81 SS G_CDS: -0.99 Total: -1.80 kcal Atomic # 7 Polarization: -38.13 SS G_CDS: 0.48 Total: -37.65 kcal Atomic # 8 Polarization: -26.66 SS G_CDS: -0.76 Total: -27.41 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Atomic # 16 Polarization: 0.87 SS G_CDS: -2.51 Total: -1.64 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -36.97 -6.81 -43.78 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601066581.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.394 kcal (2) G-P(sol) polarization free energy of solvation -36.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds