Wall clock time and date at job start Tue Mar 31 2020 06:15:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86807 * 120.00265 * 2 1 4 4 H 1.48496 * 109.46976 * 270.00188 * 3 2 1 5 5 H 1.48496 * 109.46914 * 30.00012 * 3 2 1 6 6 H 1.48495 * 109.47210 * 149.99898 * 3 2 1 7 7 C 1.37884 * 120.00267 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00207 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99380 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.47154 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.47482 * 180.02562 * 10 9 7 12 12 O 1.21282 * 119.99847 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00159 * 180.02562 * 11 10 9 14 14 C 1.46493 * 119.99992 * 179.97438 * 13 11 10 15 15 H 1.09006 * 109.47385 * 35.00131 * 14 13 11 16 16 C 1.50695 * 109.47312 * 275.00001 * 14 13 11 17 17 O 1.20821 * 119.99860 * 359.97438 * 16 14 13 18 18 O 1.34232 * 120.00242 * 180.02562 * 16 14 13 19 19 C 1.50706 * 109.47146 * 154.99690 * 14 13 11 20 20 C 1.38421 * 122.54153 * 219.73826 * 19 14 13 21 21 C 1.33385 * 114.92097 * 179.76283 * 20 19 14 22 22 S 1.75888 * 109.59417 * 0.47538 * 21 20 19 23 23 C 1.33388 * 122.53725 * 40.02568 * 19 14 13 24 24 H 0.97000 * 119.99675 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.47638 * 59.99951 * 9 7 2 26 26 H 1.09001 * 109.47825 * 299.99979 * 9 7 2 27 27 H 1.09002 * 109.46860 * 59.99508 * 10 9 7 28 28 H 1.09000 * 109.46660 * 300.00118 * 10 9 7 29 29 H 0.97006 * 119.99595 * 359.97438 * 13 11 10 30 30 H 0.96692 * 117.00325 * 179.97438 * 18 16 14 31 31 H 1.08005 * 122.53740 * 359.97438 * 20 19 14 32 32 H 1.07997 * 125.21048 * 180.20968 * 21 20 19 33 33 H 1.08004 * 125.20510 * 359.97438 * 23 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 6 1.4917 -4.9672 -0.0025 12 8 0.2789 -4.9672 -0.0015 13 7 2.1655 -6.1344 -0.0031 14 6 1.4330 -7.4031 -0.0031 15 1 0.5220 -7.2967 -0.5922 16 6 1.0752 -7.7766 1.4123 17 8 1.3993 -7.0572 2.3272 18 8 0.3974 -8.9091 1.6566 19 6 2.2968 -8.4818 -0.6044 20 6 1.7924 -9.4541 -1.4508 21 6 2.6922 -10.3309 -1.8989 22 16 4.2726 -9.9495 -1.2277 23 6 3.6041 -8.5754 -0.3568 24 1 -0.4850 0.8401 -0.0004 25 1 0.6240 -2.5567 -0.8903 26 1 0.6246 -2.5571 0.8897 27 1 2.8726 -3.6047 0.8877 28 1 2.8711 -3.6039 -0.8923 29 1 3.1356 -6.1344 -0.0035 30 1 0.1910 -9.1066 2.5804 31 1 0.7500 -9.4973 -1.7301 32 1 2.4818 -11.1522 -2.5679 33 1 4.1663 -7.9090 0.2807 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601066581.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:51 Heat of formation + Delta-G solvation = -124.651706 kcal Electronic energy + Delta-G solvation = -19391.640749 eV Core-core repulsion = 16121.936256 eV Total energy + Delta-G solvation = -3269.704493 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.95140 -40.42774 -39.13817 -37.24349 -35.68717 -35.47829 -33.11205 -31.11051 -29.27037 -27.50959 -24.67920 -24.09796 -22.38277 -21.43670 -20.05414 -19.18366 -19.08706 -18.47198 -18.11183 -17.37055 -17.25257 -16.67750 -16.43085 -16.30855 -15.36523 -14.85072 -14.55190 -14.22995 -14.13152 -13.90906 -13.73416 -13.56423 -13.25057 -13.08149 -12.81290 -12.62866 -12.47708 -12.03067 -11.93215 -11.74336 -11.65376 -11.31924 -10.94159 -10.57905 -10.45265 -9.81649 -9.38112 -8.17588 -6.31595 -0.03498 0.63645 0.97083 1.08930 1.36105 1.42604 1.45698 1.55459 1.57261 1.85129 2.41467 2.52112 3.15545 3.50496 3.85256 4.01131 4.07465 4.21847 4.44773 4.51706 4.53741 4.60950 4.96439 5.05537 5.14119 5.32376 5.36929 5.48671 5.50380 5.62419 5.85043 6.17416 6.37596 6.85186 6.86753 7.16281 7.38508 8.95206 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.026035 B = 0.003526 C = 0.003289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.198670 B = 7938.433285 C = 8511.520154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.007 4.007 3 Si 0.975 3.025 4 H -0.270 1.270 5 H -0.287 1.287 6 H -0.256 1.256 7 C -0.543 4.543 8 H 0.077 0.923 9 C 0.042 3.958 10 C -0.118 4.118 11 C 0.522 3.478 12 O -0.578 6.578 13 N -0.700 5.700 14 C 0.218 3.782 15 H 0.126 0.874 16 C 0.474 3.526 17 O -0.539 6.539 18 O -0.500 6.500 19 C -0.115 4.115 20 C -0.132 4.132 21 C -0.204 4.204 22 S 0.149 5.851 23 C -0.212 4.212 24 H 0.263 0.737 25 H -0.013 1.013 26 H -0.021 1.021 27 H 0.102 0.898 28 H 0.113 0.887 29 H 0.420 0.580 30 H 0.427 0.573 31 H 0.156 0.844 32 H 0.194 0.806 33 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.108 -25.404 -3.015 27.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.204 4.204 3 Si 0.798 3.202 4 H -0.195 1.195 5 H -0.213 1.213 6 H -0.180 1.180 7 C -0.581 4.581 8 H 0.095 0.905 9 C 0.004 3.996 10 C -0.157 4.157 11 C 0.311 3.689 12 O -0.457 6.457 13 N -0.355 5.355 14 C 0.108 3.892 15 H 0.144 0.856 16 C 0.315 3.685 17 O -0.429 6.429 18 O -0.313 6.313 19 C -0.130 4.130 20 C -0.161 4.161 21 C -0.340 4.340 22 S 0.414 5.586 23 C -0.349 4.349 24 H 0.071 0.929 25 H 0.006 0.994 26 H -0.002 1.002 27 H 0.120 0.880 28 H 0.131 0.869 29 H 0.259 0.741 30 H 0.289 0.711 31 H 0.173 0.827 32 H 0.211 0.789 33 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 10.747 -25.692 -3.306 28.045 hybrid contribution -1.442 1.562 1.047 2.370 sum 9.305 -24.130 -2.259 25.961 Atomic orbital electron populations 1.70178 1.08321 1.27809 1.51448 1.26143 0.95730 1.03958 0.94603 0.85306 0.78612 0.77648 0.78585 1.19507 1.21261 1.17995 1.21706 0.94037 0.91538 1.50843 0.90527 1.18698 0.93691 0.92368 0.94815 1.21654 0.99460 0.89524 1.05112 1.21449 0.87930 0.86520 0.73002 1.90658 1.16452 1.88142 1.50435 1.45719 1.10922 1.03060 1.75802 1.18738 0.97738 0.83450 0.89249 0.85631 1.24058 0.73665 0.78063 0.92708 1.90738 1.52521 1.52114 1.47484 1.84465 1.68434 1.40049 1.38333 1.18378 0.93478 0.98295 1.02809 1.20082 1.02399 0.94835 0.98778 1.25959 0.95325 1.05588 1.07103 1.84267 1.10299 1.22538 1.41508 1.25747 0.97903 1.04316 1.06905 0.92853 0.99413 1.00221 0.87979 0.86908 0.74137 0.71104 0.82666 0.78864 0.80738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.12 13.29 21.45 0.28 -59.84 16 2 C -0.01 -0.41 5.46 84.66 0.46 0.06 16 3 Si 0.97 44.73 29.54 68.60 2.03 46.76 16 4 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 5 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 6 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 7 C -0.54 -31.32 9.11 25.60 0.23 -31.09 16 8 H 0.08 4.01 7.74 -2.91 -0.02 3.99 16 9 C 0.04 2.38 4.26 29.85 0.13 2.50 16 10 C -0.12 -4.85 5.64 29.85 0.17 -4.68 16 11 C 0.52 20.79 7.66 87.66 0.67 21.46 16 12 O -0.58 -28.65 15.65 -3.03 -0.05 -28.70 16 13 N -0.70 -20.02 4.57 -449.69 -2.06 -22.07 16 14 C 0.22 5.62 2.77 43.50 0.12 5.74 16 15 H 0.13 3.47 7.52 -2.38 -0.02 3.45 16 16 C 0.47 13.22 7.65 71.23 0.54 13.77 16 17 O -0.54 -19.18 17.08 21.98 0.38 -18.81 16 18 O -0.50 -10.07 13.34 -51.43 -0.69 -10.76 16 19 C -0.12 -2.18 4.78 -20.92 -0.10 -2.28 16 20 C -0.13 -2.05 9.95 21.21 0.21 -1.84 16 21 C -0.20 -2.43 11.23 66.72 0.75 -1.68 16 22 S 0.15 1.82 23.34 -56.49 -1.32 0.50 16 23 C -0.21 -3.39 10.21 66.72 0.68 -2.71 16 24 H 0.26 15.76 8.31 -92.71 -0.77 14.99 16 25 H -0.01 -0.79 8.10 -2.39 -0.02 -0.81 16 26 H -0.02 -1.34 8.10 -2.39 -0.02 -1.36 16 27 H 0.10 3.82 8.14 -2.39 -0.02 3.80 16 28 H 0.11 3.94 8.14 -2.39 -0.02 3.92 16 29 H 0.42 9.10 7.21 -92.70 -0.67 8.43 16 30 H 0.43 5.04 9.10 -74.06 -0.67 4.37 16 31 H 0.16 2.09 8.06 -2.91 -0.02 2.07 16 32 H 0.19 1.22 8.06 -2.91 -0.02 1.20 16 33 H 0.18 2.40 7.33 -2.91 -0.02 2.38 16 Total: -1.00 -83.26 312.65 2.27 -80.99 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: -0.18 Total: 12.69 kcal Atomic # 6 Polarization: -4.64 SS G_CDS: 3.87 Total: -0.77 kcal Atomic # 7 Polarization: -80.14 SS G_CDS: -1.77 Total: -81.91 kcal Atomic # 8 Polarization: -57.90 SS G_CDS: -0.36 Total: -58.26 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Atomic # 16 Polarization: 1.82 SS G_CDS: -1.32 Total: 0.50 kcal Total: -83.26 2.27 -80.99 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601066581.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.664 kcal (2) G-P(sol) polarization free energy of solvation -83.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds