Wall clock time and date at job start Tue Mar 31 2020 06:15:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86799 * 119.99825 * 2 1 4 4 H 1.48498 * 109.47549 * 270.00255 * 3 2 1 5 5 H 1.48502 * 109.47079 * 30.00873 * 3 2 1 6 6 H 1.48501 * 109.46958 * 150.00376 * 3 2 1 7 7 C 1.37870 * 119.99860 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00252 * 359.97438 * 7 2 1 9 9 C 1.50703 * 120.00102 * 179.97438 * 7 2 1 10 10 C 1.53004 * 109.47310 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.46931 * 179.97438 * 10 9 7 12 12 O 1.21277 * 120.00066 * 0.02562 * 11 10 9 13 13 N 1.34779 * 119.99831 * 179.97438 * 11 10 9 14 14 C 1.46493 * 119.99897 * 179.97438 * 13 11 10 15 15 H 1.08997 * 109.47261 * 325.00633 * 14 13 11 16 16 C 1.50706 * 109.47153 * 85.00552 * 14 13 11 17 17 O 1.20825 * 119.99859 * 359.97438 * 16 14 13 18 18 O 1.34224 * 120.00295 * 180.02562 * 16 14 13 19 19 C 1.50696 * 109.47208 * 205.00173 * 14 13 11 20 20 C 1.38423 * 122.53891 * 139.99958 * 19 14 13 21 21 C 1.33393 * 114.92279 * 179.97438 * 20 19 14 22 22 S 1.75885 * 109.59108 * 0.02562 * 21 20 19 23 23 C 1.33389 * 122.54305 * 319.71232 * 19 14 13 24 24 H 0.96993 * 119.99651 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.47065 * 59.99657 * 9 7 2 26 26 H 1.08998 * 109.47159 * 300.00239 * 9 7 2 27 27 H 1.08999 * 109.46757 * 60.00081 * 10 9 7 28 28 H 1.09000 * 109.46802 * 299.99743 * 10 9 7 29 29 H 0.97001 * 119.99623 * 0.02562 * 13 11 10 30 30 H 0.96700 * 117.00196 * 179.97438 * 18 16 14 31 31 H 1.08004 * 122.54117 * 0.02562 * 20 19 14 32 32 H 1.07997 * 125.20432 * 179.97438 * 21 20 19 33 33 H 1.07999 * 125.19697 * 0.02779 * 23 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1941 -0.0011 10 6 4.0216 -2.6366 -0.0010 11 6 5.5286 -2.6366 -0.0022 12 8 6.1350 -1.5863 -0.0026 13 7 6.2025 -3.8038 -0.0018 14 6 7.6674 -3.8038 -0.0036 15 1 8.0301 -2.9625 -0.5942 16 6 8.1715 -3.6786 1.4112 17 8 7.3874 -3.5972 2.3269 18 8 9.4914 -3.6564 1.6539 19 6 8.1691 -5.0920 -0.6033 20 6 9.2590 -5.1420 -1.4551 21 6 9.5719 -6.3612 -1.8967 22 16 8.4516 -7.5379 -1.2231 23 6 7.5999 -6.2713 -0.3492 24 1 -0.4849 0.8400 0.0004 25 1 3.8753 -0.6804 0.8888 26 1 3.8746 -0.6800 -0.8911 27 1 3.6579 -3.1506 -0.8907 28 1 3.6586 -3.1502 0.8893 29 1 5.7174 -4.6438 -0.0011 30 1 9.7667 -3.5744 2.5773 31 1 9.8146 -4.2607 -1.7399 32 1 10.3877 -6.5905 -2.5662 33 1 6.7452 -6.4245 0.2930 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601066582.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:55 Heat of formation + Delta-G solvation = -94.425054 kcal Electronic energy + Delta-G solvation = -19456.284407 eV Core-core repulsion = 16187.890639 eV Total energy + Delta-G solvation = -3268.393767 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.89054 -39.15434 -38.32143 -36.23921 -34.44466 -33.49248 -31.43116 -30.21409 -28.39843 -25.92329 -23.95196 -22.32325 -20.86691 -20.06035 -19.27162 -18.21780 -18.11354 -17.18904 -16.95726 -16.29897 -16.00475 -15.58730 -14.88109 -14.44574 -14.08724 -13.68829 -13.50999 -13.17097 -13.06853 -12.88610 -12.56441 -12.48903 -12.33217 -11.62481 -11.42255 -11.15490 -10.97311 -10.87699 -10.18018 -10.05374 -9.78909 -9.46338 -9.23900 -9.19615 -9.16474 -8.78386 -8.49339 -6.01653 -4.00405 0.57884 1.24078 1.57357 2.03731 2.23516 2.56414 3.10991 3.39102 3.45634 3.53699 3.57075 4.31224 4.52379 4.57623 4.83453 4.97588 5.11054 5.22626 5.33871 5.40847 5.62074 5.88342 5.97832 6.05455 6.09471 6.29882 6.35308 6.67136 7.36063 7.44313 7.55547 7.75984 7.79576 8.44840 8.55617 9.01162 9.61323 11.11185 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.026151 B = 0.003755 C = 0.003517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.444415 B = 7454.743319 C = 7958.917383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.069 3.931 3 Si 0.877 3.123 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.261 1.261 7 C -0.524 4.524 8 H 0.073 0.927 9 C 0.001 3.999 10 C -0.119 4.119 11 C 0.520 3.480 12 O -0.534 6.534 13 N -0.719 5.719 14 C 0.220 3.780 15 H 0.134 0.866 16 C 0.470 3.530 17 O -0.496 6.496 18 O -0.513 6.513 19 C -0.107 4.107 20 C -0.114 4.114 21 C -0.211 4.211 22 S 0.119 5.881 23 C -0.201 4.201 24 H 0.263 0.737 25 H 0.024 0.976 26 H 0.020 0.980 27 H 0.089 0.911 28 H 0.090 0.910 29 H 0.405 0.595 30 H 0.408 0.592 31 H 0.148 0.852 32 H 0.169 0.831 33 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.966 -16.318 -2.349 27.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.132 4.132 3 Si 0.704 3.296 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.185 1.185 7 C -0.562 4.562 8 H 0.091 0.909 9 C -0.037 4.037 10 C -0.159 4.159 11 C 0.309 3.691 12 O -0.409 6.409 13 N -0.375 5.375 14 C 0.110 3.890 15 H 0.152 0.848 16 C 0.309 3.691 17 O -0.382 6.382 18 O -0.324 6.324 19 C -0.120 4.120 20 C -0.144 4.144 21 C -0.346 4.346 22 S 0.383 5.617 23 C -0.338 4.338 24 H 0.073 0.927 25 H 0.043 0.957 26 H 0.038 0.962 27 H 0.107 0.893 28 H 0.108 0.892 29 H 0.241 0.759 30 H 0.267 0.733 31 H 0.166 0.834 32 H 0.186 0.814 33 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 21.720 -17.018 -2.640 27.719 hybrid contribution 0.489 2.018 0.835 2.238 sum 22.209 -15.000 -1.806 26.861 Atomic orbital electron populations 1.69914 1.06283 1.26962 1.51081 1.24964 0.94709 0.99216 0.94323 0.86799 0.80654 0.83408 0.78722 1.20218 1.21430 1.18541 1.21097 0.89193 0.94608 1.51338 0.90878 1.19387 0.96507 0.90031 0.97748 1.21681 0.86995 1.03585 1.03657 1.21697 0.91863 0.82307 0.73195 1.90658 1.70674 1.31315 1.48220 1.46034 1.03481 1.10400 1.77553 1.18661 0.83163 0.97693 0.89512 0.84844 1.23924 0.80240 0.72151 0.92824 1.90755 1.56934 1.44369 1.46147 1.84513 1.26021 1.85263 1.36620 1.18525 0.98613 0.93319 1.01581 1.19972 0.97407 0.98650 0.98390 1.25620 1.05348 0.95944 1.07710 1.84346 1.24305 1.10583 1.42419 1.25546 1.05910 0.95661 1.06646 0.92720 0.95744 0.96179 0.89280 0.89178 0.75877 0.73283 0.83438 0.81381 0.81458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.19 13.96 55.43 0.77 -27.42 16 2 C 0.07 2.06 5.47 -17.82 -0.10 1.97 16 3 Si 0.88 22.79 27.47 -169.99 -4.67 18.12 16 4 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 5 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 6 H -0.26 -6.79 6.54 56.52 0.37 -6.42 16 7 C -0.52 -15.13 9.66 -34.44 -0.33 -15.46 16 8 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 9 C 0.00 0.03 3.33 -27.88 -0.09 -0.06 16 10 C -0.12 -2.34 5.64 -27.88 -0.16 -2.50 16 11 C 0.52 9.59 7.66 -10.98 -0.08 9.50 16 12 O -0.53 -11.78 15.65 5.56 0.09 -11.70 16 13 N -0.72 -9.89 4.57 -56.07 -0.26 -10.15 16 14 C 0.22 2.71 2.77 -70.24 -0.19 2.52 16 15 H 0.13 1.69 7.52 -51.93 -0.39 1.30 16 16 C 0.47 6.29 7.65 36.01 0.28 6.56 16 17 O -0.50 -8.42 17.08 -18.75 -0.32 -8.74 16 18 O -0.51 -5.13 13.34 -39.24 -0.52 -5.65 16 19 C -0.11 -1.03 4.78 -106.25 -0.51 -1.54 16 20 C -0.11 -0.95 9.95 -41.21 -0.41 -1.36 16 21 C -0.21 -1.48 11.23 29.04 0.33 -1.16 16 22 S 0.12 0.86 23.34 -107.50 -2.51 -1.65 16 23 C -0.20 -1.74 10.21 29.04 0.30 -1.44 16 24 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 25 H 0.02 0.65 7.16 -51.93 -0.37 0.28 16 26 H 0.02 0.51 7.53 -51.93 -0.39 0.12 16 27 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 28 H 0.09 1.67 8.14 -51.93 -0.42 1.25 16 29 H 0.41 4.44 7.23 -40.82 -0.29 4.14 16 30 H 0.41 2.45 9.10 45.56 0.41 2.87 16 31 H 0.15 1.03 8.06 -52.48 -0.42 0.60 16 32 H 0.17 0.78 8.06 -52.49 -0.42 0.36 16 33 H 0.17 1.26 7.35 -52.49 -0.39 0.88 16 LS Contribution 309.07 15.07 4.66 4.66 Total: -1.00 -36.96 309.07 -6.43 -43.40 By element: Atomic # 1 Polarization: 4.78 SS G_CDS: -2.70 Total: 2.09 kcal Atomic # 6 Polarization: -1.98 SS G_CDS: -0.98 Total: -2.96 kcal Atomic # 7 Polarization: -38.08 SS G_CDS: 0.52 Total: -37.57 kcal Atomic # 8 Polarization: -25.33 SS G_CDS: -0.76 Total: -26.09 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -4.67 Total: 18.12 kcal Atomic # 16 Polarization: 0.86 SS G_CDS: -2.51 Total: -1.65 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -36.96 -6.43 -43.40 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601066582.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.027 kcal (2) G-P(sol) polarization free energy of solvation -36.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds