Wall clock time and date at job start Tue Mar 31 2020 06:15:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86799 * 119.99825 * 2 1 4 4 H 1.48498 * 109.47549 * 270.00255 * 3 2 1 5 5 H 1.48502 * 109.47079 * 30.00873 * 3 2 1 6 6 H 1.48501 * 109.46958 * 150.00376 * 3 2 1 7 7 C 1.37870 * 119.99860 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00252 * 359.97438 * 7 2 1 9 9 C 1.50703 * 120.00102 * 179.97438 * 7 2 1 10 10 C 1.53004 * 109.47310 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.46931 * 179.97438 * 10 9 7 12 12 O 1.21277 * 120.00066 * 0.02562 * 11 10 9 13 13 N 1.34779 * 119.99831 * 179.97438 * 11 10 9 14 14 C 1.46493 * 119.99897 * 179.97438 * 13 11 10 15 15 H 1.08997 * 109.47261 * 325.00633 * 14 13 11 16 16 C 1.50706 * 109.47153 * 85.00552 * 14 13 11 17 17 O 1.20825 * 119.99859 * 359.97438 * 16 14 13 18 18 O 1.34224 * 120.00295 * 180.02562 * 16 14 13 19 19 C 1.50696 * 109.47208 * 205.00173 * 14 13 11 20 20 C 1.38423 * 122.53891 * 139.99958 * 19 14 13 21 21 C 1.33393 * 114.92279 * 179.97438 * 20 19 14 22 22 S 1.75885 * 109.59108 * 0.02562 * 21 20 19 23 23 C 1.33389 * 122.54305 * 319.71232 * 19 14 13 24 24 H 0.96993 * 119.99651 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.47065 * 59.99657 * 9 7 2 26 26 H 1.08998 * 109.47159 * 300.00239 * 9 7 2 27 27 H 1.08999 * 109.46757 * 60.00081 * 10 9 7 28 28 H 1.09000 * 109.46802 * 299.99743 * 10 9 7 29 29 H 0.97001 * 119.99623 * 0.02562 * 13 11 10 30 30 H 0.96700 * 117.00196 * 179.97438 * 18 16 14 31 31 H 1.08004 * 122.54117 * 0.02562 * 20 19 14 32 32 H 1.07997 * 125.20432 * 179.97438 * 21 20 19 33 33 H 1.07999 * 125.19697 * 0.02779 * 23 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1941 -0.0011 10 6 4.0216 -2.6366 -0.0010 11 6 5.5286 -2.6366 -0.0022 12 8 6.1350 -1.5863 -0.0026 13 7 6.2025 -3.8038 -0.0018 14 6 7.6674 -3.8038 -0.0036 15 1 8.0301 -2.9625 -0.5942 16 6 8.1715 -3.6786 1.4112 17 8 7.3874 -3.5972 2.3269 18 8 9.4914 -3.6564 1.6539 19 6 8.1691 -5.0920 -0.6033 20 6 9.2590 -5.1420 -1.4551 21 6 9.5719 -6.3612 -1.8967 22 16 8.4516 -7.5379 -1.2231 23 6 7.5999 -6.2713 -0.3492 24 1 -0.4849 0.8400 0.0004 25 1 3.8753 -0.6804 0.8888 26 1 3.8746 -0.6800 -0.8911 27 1 3.6579 -3.1506 -0.8907 28 1 3.6586 -3.1502 0.8893 29 1 5.7174 -4.6438 -0.0011 30 1 9.7667 -3.5744 2.5773 31 1 9.8146 -4.2607 -1.7399 32 1 10.3877 -6.5905 -2.5662 33 1 6.7452 -6.4245 0.2930 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601066582.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:54 Heat of formation + Delta-G solvation = -121.833462 kcal Electronic energy + Delta-G solvation = -19457.472924 eV Core-core repulsion = 16187.890639 eV Total energy + Delta-G solvation = -3269.582285 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.95716 -40.44744 -39.14287 -37.24148 -35.69043 -35.47400 -33.38726 -31.20569 -29.34314 -27.72654 -24.67832 -23.79623 -22.26453 -21.43303 -20.07494 -19.37146 -19.13826 -18.65290 -18.11166 -17.46543 -17.26483 -16.68496 -16.37260 -16.21617 -15.39456 -14.89273 -14.68470 -14.55307 -14.21178 -13.91030 -13.75790 -13.58356 -13.41670 -13.08649 -12.91110 -12.62427 -12.14157 -12.02716 -11.98069 -11.78104 -11.73170 -11.41283 -10.99200 -10.78127 -10.47856 -9.81864 -9.39004 -8.31465 -6.34429 -0.03650 0.63400 0.97423 1.09043 1.33106 1.34399 1.35261 1.50427 1.55285 1.83245 2.35193 2.48982 3.04218 3.49952 3.83335 3.98084 4.06263 4.21421 4.35584 4.47153 4.48939 4.60845 4.93019 5.01198 5.11203 5.31557 5.35024 5.36864 5.43116 5.49459 5.60333 6.22422 6.35236 6.71537 6.85915 7.11528 7.30902 8.84243 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.026151 B = 0.003755 C = 0.003517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.444415 B = 7454.743319 C = 7958.917383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.014 3.986 3 Si 0.938 3.062 4 H -0.265 1.265 5 H -0.278 1.278 6 H -0.264 1.264 7 C -0.529 4.529 8 H 0.051 0.949 9 C 0.005 3.995 10 C -0.115 4.115 11 C 0.525 3.475 12 O -0.575 6.575 13 N -0.701 5.701 14 C 0.219 3.781 15 H 0.131 0.869 16 C 0.474 3.526 17 O -0.539 6.539 18 O -0.500 6.500 19 C -0.115 4.115 20 C -0.130 4.130 21 C -0.205 4.205 22 S 0.146 5.854 23 C -0.213 4.213 24 H 0.267 0.733 25 H 0.006 0.994 26 H 0.014 0.986 27 H 0.111 0.889 28 H 0.100 0.900 29 H 0.420 0.580 30 H 0.427 0.573 31 H 0.158 0.842 32 H 0.194 0.806 33 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.046 -17.413 -3.044 29.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.184 4.184 3 Si 0.763 3.237 4 H -0.190 1.190 5 H -0.204 1.204 6 H -0.188 1.188 7 C -0.567 4.567 8 H 0.069 0.931 9 C -0.033 4.033 10 C -0.155 4.155 11 C 0.314 3.686 12 O -0.454 6.454 13 N -0.356 5.356 14 C 0.109 3.891 15 H 0.148 0.852 16 C 0.315 3.685 17 O -0.428 6.428 18 O -0.313 6.313 19 C -0.130 4.130 20 C -0.160 4.160 21 C -0.340 4.340 22 S 0.410 5.590 23 C -0.350 4.350 24 H 0.076 0.924 25 H 0.025 0.975 26 H 0.032 0.968 27 H 0.129 0.871 28 H 0.118 0.882 29 H 0.258 0.742 30 H 0.289 0.711 31 H 0.175 0.825 32 H 0.211 0.789 33 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 23.839 -18.175 -3.339 30.163 hybrid contribution -0.096 2.202 1.052 2.442 sum 23.743 -15.974 -2.287 28.708 Atomic orbital electron populations 1.70024 1.07763 1.28105 1.52494 1.25794 0.95497 1.02834 0.94241 0.85833 0.79133 0.79503 0.79279 1.18987 1.20390 1.18841 1.21413 0.91143 0.93796 1.50362 0.93068 1.19231 0.94068 0.93532 0.96468 1.21508 0.88373 1.00287 1.05328 1.21306 0.91327 0.82912 0.73048 1.90640 1.71203 1.32976 1.50570 1.45722 1.04593 1.09607 1.75644 1.18751 0.81729 0.99307 0.89301 0.85193 1.24053 0.80795 0.70960 0.92689 1.90744 1.58082 1.46618 1.47395 1.84466 1.24093 1.84350 1.38389 1.18387 0.99721 0.92154 1.02701 1.20089 0.97453 0.99697 0.98725 1.25965 1.05517 0.95337 1.07203 1.84317 1.23605 1.09663 1.41397 1.25747 1.06283 0.96072 1.06853 0.92358 0.97520 0.96754 0.87069 0.88158 0.74174 0.71097 0.82479 0.78903 0.80841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.53 13.96 21.45 0.30 -59.23 16 2 C 0.01 0.84 5.47 84.65 0.46 1.31 16 3 Si 0.94 47.24 27.47 68.60 1.88 49.13 16 4 H -0.26 -12.77 7.11 99.48 0.71 -12.06 16 5 H -0.28 -13.47 7.11 99.48 0.71 -12.77 16 6 H -0.26 -13.33 6.54 99.48 0.65 -12.68 16 7 C -0.53 -30.88 9.66 25.60 0.25 -30.63 16 8 H 0.05 3.13 7.99 -2.91 -0.02 3.11 16 9 C 0.00 0.25 3.33 29.85 0.10 0.35 16 10 C -0.12 -4.45 5.64 29.85 0.17 -4.28 16 11 C 0.52 19.04 7.66 87.66 0.67 19.71 16 12 O -0.58 -25.37 15.65 -3.02 -0.05 -25.42 16 13 N -0.70 -18.51 4.57 -449.70 -2.06 -20.57 16 14 C 0.22 5.15 2.77 43.50 0.12 5.27 16 15 H 0.13 3.19 7.52 -2.39 -0.02 3.18 16 16 C 0.47 12.23 7.65 71.24 0.54 12.77 16 17 O -0.54 -18.05 17.08 21.97 0.38 -17.68 16 18 O -0.50 -9.16 13.34 -51.35 -0.69 -9.84 16 19 C -0.12 -2.02 4.78 -20.92 -0.10 -2.12 16 20 C -0.13 -1.85 9.95 21.22 0.21 -1.64 16 21 C -0.20 -2.26 11.23 66.72 0.75 -1.51 16 22 S 0.15 1.71 23.34 -56.49 -1.32 0.40 16 23 C -0.21 -3.24 10.21 66.72 0.68 -2.56 16 24 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 25 H 0.01 0.35 7.16 -2.39 -0.02 0.33 16 26 H 0.01 0.73 7.53 -2.39 -0.02 0.71 16 27 H 0.11 3.76 8.14 -2.39 -0.02 3.74 16 28 H 0.10 3.65 8.14 -2.39 -0.02 3.63 16 29 H 0.42 8.54 7.23 -92.71 -0.67 7.87 16 30 H 0.43 4.34 9.10 -74.06 -0.67 3.67 16 31 H 0.16 1.85 8.06 -2.91 -0.02 1.82 16 32 H 0.19 1.08 8.06 -2.91 -0.02 1.05 16 33 H 0.17 2.30 7.35 -2.91 -0.02 2.28 16 Total: -1.00 -79.78 309.07 2.07 -77.70 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -0.23 Total: 8.86 kcal Atomic # 6 Polarization: -7.20 SS G_CDS: 3.86 Total: -3.35 kcal Atomic # 7 Polarization: -78.04 SS G_CDS: -1.76 Total: -79.80 kcal Atomic # 8 Polarization: -52.59 SS G_CDS: -0.36 Total: -52.94 kcal Atomic # 14 Polarization: 47.24 SS G_CDS: 1.88 Total: 49.13 kcal Atomic # 16 Polarization: 1.71 SS G_CDS: -1.32 Total: 0.40 kcal Total: -79.78 2.07 -77.70 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601066582.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.132 kcal (2) G-P(sol) polarization free energy of solvation -79.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds