Wall clock time and date at job start Tue Mar 31 2020 06:11:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 119.99918 * 2 1 4 4 H 1.48501 * 109.46885 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47338 * 299.99799 * 3 2 1 6 6 H 1.48500 * 109.47336 * 60.00285 * 3 2 1 7 7 C 1.37874 * 119.99614 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99404 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00308 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.47421 * 180.02562 * 9 7 2 11 11 S 1.81400 * 109.47286 * 180.02562 * 10 9 7 12 12 O 1.42100 * 109.47145 * 63.61070 * 11 10 9 13 13 C 1.81394 * 103.00141 * 179.97438 * 11 10 9 14 14 C 1.50696 * 109.47651 * 179.97438 * 13 11 10 15 15 C 1.38629 * 119.54595 * 270.02551 * 14 13 11 16 16 C 1.38578 * 119.35437 * 179.97438 * 15 14 13 17 17 C 1.38631 * 118.49439 * 359.72671 * 16 15 14 18 18 C 1.39312 * 119.05110 * 0.51106 * 17 16 15 19 19 C 1.48073 * 119.72184 * 179.75373 * 18 17 16 20 20 O 1.21427 * 120.00106 * 359.72725 * 19 18 17 21 21 O 1.34675 * 119.99960 * 179.72827 * 19 18 17 22 22 N 1.31474 * 119.54579 * 89.99295 * 14 13 11 23 23 H 0.97000 * 119.99828 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.47375 * 59.99616 * 9 7 2 25 25 H 1.09002 * 109.47485 * 300.00271 * 9 7 2 26 26 H 1.08997 * 109.46968 * 60.00182 * 10 9 7 27 27 H 1.08997 * 109.46559 * 300.00328 * 10 9 7 28 28 H 1.09000 * 109.47001 * 59.99773 * 13 11 10 29 29 H 1.09004 * 109.47086 * 300.00567 * 13 11 10 30 30 H 1.08003 * 120.32288 * 359.97438 * 15 14 13 31 31 H 1.08006 * 120.75642 * 180.02562 * 16 15 14 32 32 H 1.07998 * 120.47539 * 180.28758 * 17 16 15 33 33 H 0.96700 * 117.00166 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0018 11 16 1.3381 -5.2331 0.0011 12 8 0.5869 -5.3457 -1.1999 13 6 2.6647 -6.4703 0.0019 14 6 2.0631 -7.8519 0.0020 15 6 1.7892 -8.4782 1.2081 16 6 1.2356 -9.7485 1.2036 17 6 0.9684 -10.3492 -0.0170 18 6 1.2742 -9.6628 -1.1901 19 6 1.0001 -10.2926 -2.5018 20 8 0.5154 -11.4048 -2.5519 21 8 1.2885 -9.6319 -3.6394 22 7 1.8047 -8.4466 -1.1417 23 1 -0.4850 0.8401 -0.0004 24 1 0.6246 -2.5570 -0.8896 25 1 0.6239 -2.5567 0.8903 26 1 2.8711 -3.6040 0.8923 27 1 2.8725 -3.6047 -0.8877 28 1 3.2802 -6.3423 0.8924 29 1 3.2816 -6.3422 -0.8876 30 1 2.0053 -7.9809 2.1422 31 1 1.0127 -10.2572 2.1299 32 1 0.5328 -11.3366 -0.0578 33 1 1.0914 -10.0836 -4.4714 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601066947.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:11 Heat of formation + Delta-G solvation = -97.865277 kcal Electronic energy + Delta-G solvation = -18776.463925 eV Core-core repulsion = 15507.920979 eV Total energy + Delta-G solvation = -3268.542947 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.98875 -39.66057 -36.34319 -35.16848 -33.69924 -33.31457 -32.82815 -30.90807 -28.20988 -25.65423 -25.31859 -22.86920 -21.76981 -21.01170 -18.61826 -17.64907 -17.11991 -16.64356 -16.47985 -16.13128 -15.98970 -15.01651 -14.84711 -14.46431 -14.27474 -13.84597 -13.62905 -13.54158 -13.13063 -12.78907 -12.38700 -12.21010 -11.76905 -11.68154 -11.31078 -11.15209 -11.00671 -10.74491 -10.34744 -10.17544 -10.15817 -9.82420 -9.69609 -9.38046 -8.85945 -8.43523 -7.75148 -6.06251 -4.10524 0.22069 0.84791 1.89817 2.23382 2.64415 3.08858 3.27636 3.35405 3.38874 3.56892 3.85654 4.15999 4.40805 4.46630 4.63415 4.68817 4.74745 5.15336 5.16223 5.28943 5.30232 5.71965 5.73375 5.75538 5.92840 6.10798 6.16677 6.25094 6.77594 7.42762 7.46925 7.58800 7.76296 7.88950 8.29801 8.94477 9.53860 11.04393 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.034297 B = 0.003207 C = 0.003064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.196764 B = 8727.527953 C = 9135.941618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.057 3.943 3 Si 0.895 3.105 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.282 1.282 7 C -0.518 4.518 8 H 0.058 0.942 9 C 0.037 3.963 10 C -0.416 4.416 11 S 1.229 4.771 12 O -0.832 6.832 13 C -0.418 4.418 14 C 0.157 3.843 15 C -0.135 4.135 16 C -0.079 4.079 17 C -0.115 4.115 18 C 0.092 3.908 19 C 0.546 3.454 20 O -0.512 6.512 21 O -0.488 6.488 22 N -0.429 5.429 23 H 0.262 0.738 24 H 0.023 0.977 25 H 0.029 0.971 26 H 0.107 0.893 27 H 0.075 0.925 28 H 0.133 0.867 29 H 0.106 0.894 30 H 0.154 0.846 31 H 0.150 0.850 32 H 0.150 0.850 33 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.975 -20.633 5.601 21.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.145 4.145 3 Si 0.723 3.277 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.208 1.208 7 C -0.558 4.558 8 H 0.076 0.924 9 C -0.001 4.001 10 C -0.556 4.556 11 S 1.427 4.573 12 O -0.827 6.827 13 C -0.551 4.551 14 C 0.016 3.984 15 C -0.156 4.156 16 C -0.105 4.105 17 C -0.136 4.136 18 C -0.045 4.045 19 C 0.388 3.612 20 O -0.400 6.400 21 O -0.297 6.297 22 N -0.141 5.141 23 H 0.072 0.928 24 H 0.042 0.958 25 H 0.047 0.953 26 H 0.125 0.875 27 H 0.094 0.906 28 H 0.151 0.849 29 H 0.124 0.876 30 H 0.172 0.828 31 H 0.168 0.832 32 H 0.168 0.832 33 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges 2.999 -20.414 5.099 21.253 hybrid contribution 1.532 0.514 -1.683 2.334 sum 4.531 -19.900 3.416 20.693 Atomic orbital electron populations 1.69971 1.06055 1.26783 1.50304 1.25050 0.94917 0.99375 0.95158 0.86483 0.80009 0.83524 0.77677 1.19729 1.20975 1.20833 1.21181 0.93068 0.90362 1.51201 0.92377 1.18803 0.92992 0.90159 0.98165 1.27623 1.09659 1.12088 1.06228 1.70614 0.86867 0.87032 1.12773 1.93148 1.55529 1.83607 1.50425 1.26957 1.15916 1.03395 1.08792 1.20502 0.95085 0.94900 0.87945 1.22382 0.97990 0.95554 0.99689 1.21620 0.95976 0.94684 0.98178 1.22073 0.98457 1.01492 0.91577 1.19928 1.01588 0.92078 0.90890 1.20525 0.73777 0.82392 0.84481 1.90888 1.41459 1.19737 1.87911 1.84743 1.77959 1.50344 1.16659 1.67460 1.08743 1.07765 1.30145 0.92817 0.95834 0.95323 0.87472 0.90644 0.84856 0.87567 0.82783 0.83184 0.83199 0.72941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.56 13.29 55.43 0.74 -25.82 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.90 21.33 29.54 -169.99 -5.02 16.30 16 4 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 5 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.52 -14.40 9.11 -34.44 -0.31 -14.72 16 8 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 9 C 0.04 0.94 4.98 -27.88 -0.14 0.80 16 10 C -0.42 -7.80 5.86 37.16 0.22 -7.59 16 11 S 1.23 19.09 13.14 -107.50 -1.41 17.68 16 12 O -0.83 -18.90 18.14 -35.23 -0.64 -19.54 16 13 C -0.42 -5.04 6.20 36.00 0.22 -4.82 16 14 C 0.16 1.98 6.04 -82.60 -0.50 1.48 16 15 C -0.14 -1.14 9.75 -39.31 -0.38 -1.52 16 16 C -0.08 -0.60 10.17 -39.31 -0.40 -1.00 16 17 C -0.12 -1.15 9.63 -39.04 -0.38 -1.52 16 18 C 0.09 1.24 6.75 -83.02 -0.56 0.68 16 19 C 0.55 7.27 8.32 34.77 0.29 7.56 16 20 O -0.51 -7.17 17.11 -19.21 -0.33 -7.49 16 21 O -0.49 -5.93 13.24 -40.43 -0.54 -6.47 16 22 N -0.43 -6.60 10.03 -6.07 -0.06 -6.66 16 23 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 24 H 0.02 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 26 H 0.11 1.65 8.14 -51.93 -0.42 1.23 16 27 H 0.07 1.50 8.14 -51.93 -0.42 1.07 16 28 H 0.13 1.00 8.08 -51.92 -0.42 0.58 16 29 H 0.11 1.47 8.14 -51.92 -0.42 1.04 16 30 H 0.15 0.68 8.06 -52.48 -0.42 0.25 16 31 H 0.15 0.56 8.06 -52.48 -0.42 0.14 16 32 H 0.15 1.24 7.64 -52.49 -0.40 0.84 16 33 H 0.41 2.67 9.11 45.56 0.42 3.09 16 LS Contribution 315.78 15.07 4.76 4.76 Total: -1.00 -40.49 315.78 -7.45 -47.94 By element: Atomic # 1 Polarization: 1.34 SS G_CDS: -2.91 Total: -1.57 kcal Atomic # 6 Polarization: -17.09 SS G_CDS: -2.04 Total: -19.13 kcal Atomic # 7 Polarization: -33.16 SS G_CDS: 0.68 Total: -32.48 kcal Atomic # 8 Polarization: -32.00 SS G_CDS: -1.50 Total: -33.50 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: 19.09 SS G_CDS: -1.41 Total: 17.68 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -40.49 -7.45 -47.94 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601066947.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.925 kcal (2) G-P(sol) polarization free energy of solvation -40.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds