Wall clock time and date at job start Tue Mar 31 2020 06:11:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 119.99918 * 2 1 4 4 H 1.48501 * 109.46885 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47338 * 299.99799 * 3 2 1 6 6 H 1.48500 * 109.47336 * 60.00285 * 3 2 1 7 7 C 1.37874 * 119.99614 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99404 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00308 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.47421 * 180.02562 * 9 7 2 11 11 S 1.81400 * 109.47286 * 180.02562 * 10 9 7 12 12 O 1.42100 * 109.47145 * 63.61070 * 11 10 9 13 13 C 1.81394 * 103.00141 * 179.97438 * 11 10 9 14 14 C 1.50696 * 109.47651 * 179.97438 * 13 11 10 15 15 C 1.38629 * 119.54595 * 270.02551 * 14 13 11 16 16 C 1.38578 * 119.35437 * 179.97438 * 15 14 13 17 17 C 1.38631 * 118.49439 * 359.72671 * 16 15 14 18 18 C 1.39312 * 119.05110 * 0.51106 * 17 16 15 19 19 C 1.48073 * 119.72184 * 179.75373 * 18 17 16 20 20 O 1.21427 * 120.00106 * 359.72725 * 19 18 17 21 21 O 1.34675 * 119.99960 * 179.72827 * 19 18 17 22 22 N 1.31474 * 119.54579 * 89.99295 * 14 13 11 23 23 H 0.97000 * 119.99828 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.47375 * 59.99616 * 9 7 2 25 25 H 1.09002 * 109.47485 * 300.00271 * 9 7 2 26 26 H 1.08997 * 109.46968 * 60.00182 * 10 9 7 27 27 H 1.08997 * 109.46559 * 300.00328 * 10 9 7 28 28 H 1.09000 * 109.47001 * 59.99773 * 13 11 10 29 29 H 1.09004 * 109.47086 * 300.00567 * 13 11 10 30 30 H 1.08003 * 120.32288 * 359.97438 * 15 14 13 31 31 H 1.08006 * 120.75642 * 180.02562 * 16 15 14 32 32 H 1.07998 * 120.47539 * 180.28758 * 17 16 15 33 33 H 0.96700 * 117.00166 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0018 11 16 1.3381 -5.2331 0.0011 12 8 0.5869 -5.3457 -1.1999 13 6 2.6647 -6.4703 0.0019 14 6 2.0631 -7.8519 0.0020 15 6 1.7892 -8.4782 1.2081 16 6 1.2356 -9.7485 1.2036 17 6 0.9684 -10.3492 -0.0170 18 6 1.2742 -9.6628 -1.1901 19 6 1.0001 -10.2926 -2.5018 20 8 0.5154 -11.4048 -2.5519 21 8 1.2885 -9.6319 -3.6394 22 7 1.8047 -8.4466 -1.1417 23 1 -0.4850 0.8401 -0.0004 24 1 0.6246 -2.5570 -0.8896 25 1 0.6239 -2.5567 0.8903 26 1 2.8711 -3.6040 0.8923 27 1 2.8725 -3.6047 -0.8877 28 1 3.2802 -6.3423 0.8924 29 1 3.2816 -6.3422 -0.8876 30 1 2.0053 -7.9809 2.1422 31 1 1.0127 -10.2572 2.1299 32 1 0.5328 -11.3366 -0.0578 33 1 1.0914 -10.0836 -4.4714 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601066947.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:11 Heat of formation + Delta-G solvation = -130.695570 kcal Electronic energy + Delta-G solvation = -18777.887554 eV Core-core repulsion = 15507.920979 eV Total energy + Delta-G solvation = -3269.966575 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.86082 -40.56486 -37.31980 -36.74241 -35.71338 -34.15818 -33.60763 -32.85237 -29.16320 -27.29834 -26.47485 -23.81661 -23.08542 -22.36241 -19.54752 -18.77504 -18.58915 -18.24033 -17.40874 -17.00064 -16.83042 -16.57169 -16.29396 -15.79523 -15.74077 -15.03909 -14.67866 -14.41762 -14.29590 -14.21031 -13.89043 -13.41452 -12.98215 -12.94489 -12.77165 -12.72879 -12.55980 -12.15395 -11.98869 -11.90192 -11.51189 -11.14422 -10.92160 -10.62755 -10.59141 -10.06264 -9.12692 -8.20423 -6.33448 -0.58860 0.01046 0.78494 1.28074 1.40760 1.41992 1.54713 1.82768 1.83982 2.41201 2.72780 2.91197 3.04907 3.12130 3.65634 3.87435 4.02607 4.08033 4.30471 4.32243 4.43963 4.51820 4.61222 4.86362 5.04396 5.06605 5.08991 5.30688 5.45088 5.53261 5.56940 5.78850 6.18908 6.60647 6.82192 6.92067 7.36155 8.90792 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.034297 B = 0.003207 C = 0.003064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.196764 B = 8727.527953 C = 9135.941618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.003 4.003 3 Si 0.968 3.032 4 H -0.259 1.259 5 H -0.286 1.286 6 H -0.271 1.271 7 C -0.539 4.539 8 H 0.066 0.934 9 C 0.034 3.966 10 C -0.418 4.418 11 S 1.286 4.714 12 O -0.915 6.915 13 C -0.399 4.399 14 C 0.121 3.879 15 C -0.114 4.114 16 C -0.067 4.067 17 C -0.108 4.108 18 C 0.052 3.948 19 C 0.543 3.457 20 O -0.529 6.529 21 O -0.501 6.501 22 N -0.479 5.479 23 H 0.265 0.735 24 H -0.029 1.029 25 H 0.028 0.972 26 H 0.150 0.850 27 H 0.058 0.942 28 H 0.193 0.807 29 H 0.086 0.914 30 H 0.207 0.793 31 H 0.201 0.799 32 H 0.164 0.836 33 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.778 -21.575 8.814 24.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.201 4.201 3 Si 0.792 3.208 4 H -0.183 1.183 5 H -0.212 1.212 6 H -0.196 1.196 7 C -0.578 4.578 8 H 0.085 0.915 9 C -0.004 4.004 10 C -0.556 4.556 11 S 1.487 4.513 12 O -0.911 6.911 13 C -0.535 4.535 14 C -0.021 4.021 15 C -0.134 4.134 16 C -0.092 4.092 17 C -0.129 4.129 18 C -0.084 4.084 19 C 0.386 3.614 20 O -0.419 6.419 21 O -0.314 6.314 22 N -0.192 5.192 23 H 0.074 0.926 24 H -0.011 1.011 25 H 0.046 0.954 26 H 0.168 0.832 27 H 0.077 0.923 28 H 0.210 0.790 29 H 0.105 0.895 30 H 0.224 0.776 31 H 0.218 0.782 32 H 0.182 0.818 33 H 0.292 0.708 Dipole moment (debyes) X Y Z Total from point charges 4.790 -21.319 8.289 23.370 hybrid contribution 1.017 0.625 -2.649 2.905 sum 5.807 -20.694 5.640 22.222 Atomic orbital electron populations 1.70111 1.07894 1.27901 1.51477 1.26049 0.95813 1.03574 0.94696 0.85351 0.79121 0.78521 0.77760 1.18296 1.21214 1.19615 1.21692 0.93743 0.91737 1.50671 0.91539 1.18668 0.93735 0.92445 0.95584 1.27546 1.08569 1.12016 1.07447 1.69493 0.86440 0.85349 1.09980 1.93021 1.60131 1.84786 1.53144 1.26798 1.14062 1.01828 1.10851 1.20780 0.97000 0.95236 0.89075 1.22956 0.95120 0.95514 0.99807 1.22241 0.93878 0.94251 0.98828 1.22431 0.97076 1.01822 0.91546 1.20149 1.03947 0.92502 0.91797 1.20797 0.73335 0.82243 0.84983 1.90855 1.42504 1.20265 1.88237 1.84718 1.77896 1.51019 1.17732 1.67280 1.10328 1.09101 1.32486 0.92642 1.01051 0.95419 0.83230 0.92316 0.78975 0.89521 0.77616 0.78228 0.81812 0.70783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.98 13.29 21.45 0.28 -56.70 16 2 C 0.00 -0.19 5.46 84.65 0.46 0.27 16 3 Si 0.97 43.78 29.54 68.60 2.03 45.81 16 4 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 5 H -0.29 -12.94 7.11 99.48 0.71 -12.24 16 6 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 7 C -0.54 -30.27 9.11 25.60 0.23 -30.03 16 8 H 0.07 3.52 7.74 -2.91 -0.02 3.49 16 9 C 0.03 1.76 4.98 29.85 0.15 1.91 16 10 C -0.42 -15.47 5.86 71.98 0.42 -15.05 16 11 S 1.29 39.27 13.14 -56.49 -0.74 38.53 16 12 O -0.92 -43.61 18.14 -148.98 -2.70 -46.31 16 13 C -0.40 -8.57 6.20 71.23 0.44 -8.13 16 14 C 0.12 2.76 6.04 42.70 0.26 3.02 16 15 C -0.11 -1.34 9.75 22.44 0.22 -1.12 16 16 C -0.07 -0.68 10.17 22.44 0.23 -0.45 16 17 C -0.11 -1.90 9.63 22.62 0.22 -1.68 16 18 C 0.05 1.38 6.75 41.87 0.28 1.67 16 19 C 0.54 15.00 8.32 70.43 0.59 15.58 16 20 O -0.53 -15.12 17.11 20.07 0.34 -14.77 16 21 O -0.50 -12.97 13.24 -55.84 -0.74 -13.71 16 22 N -0.48 -14.71 10.03 -173.11 -1.74 -16.44 16 23 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 24 H -0.03 -1.78 8.14 -2.39 -0.02 -1.80 16 25 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.15 4.16 8.14 -2.39 -0.02 4.14 16 27 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 28 H 0.19 1.76 8.08 -2.39 -0.02 1.74 16 29 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 30 H 0.21 0.20 8.06 -2.91 -0.02 0.18 16 31 H 0.20 0.07 8.06 -2.91 -0.02 0.05 16 32 H 0.16 2.33 7.64 -2.91 -0.02 2.30 16 33 H 0.43 6.15 9.11 -74.06 -0.67 5.48 16 Total: -1.00 -95.96 315.78 0.70 -95.26 By element: Atomic # 1 Polarization: 1.90 SS G_CDS: 0.47 Total: 2.36 kcal Atomic # 6 Polarization: -37.52 SS G_CDS: 3.50 Total: -34.03 kcal Atomic # 7 Polarization: -71.69 SS G_CDS: -1.45 Total: -73.14 kcal Atomic # 8 Polarization: -71.69 SS G_CDS: -3.10 Total: -74.79 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Atomic # 16 Polarization: 39.27 SS G_CDS: -0.74 Total: 38.53 kcal Total: -95.96 0.70 -95.26 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601066947.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.436 kcal (2) G-P(sol) polarization free energy of solvation -95.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds