Wall clock time and date at job start Tue Mar 31 2020 06:10:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31392 * 1 3 3 Si 1.86804 * 119.99891 * 2 1 4 4 H 1.48499 * 109.46924 * 239.99961 * 3 2 1 5 5 H 1.48498 * 109.47102 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.46870 * 119.99946 * 3 2 1 7 7 C 1.39006 * 120.00001 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00183 * 244.70667 * 7 2 1 9 9 N 1.36921 * 119.99956 * 64.43391 * 7 2 1 10 10 C 1.46496 * 119.99895 * 289.36563 * 9 7 2 11 11 C 1.50701 * 109.47076 * 84.72144 * 10 9 7 12 12 O 1.20828 * 119.99832 * 359.97438 * 11 10 9 13 13 O 1.34225 * 120.00105 * 180.02562 * 11 10 9 14 14 C 1.34775 * 120.00210 * 109.36889 * 9 7 2 15 15 O 1.21641 * 119.99951 * 7.12042 * 14 9 7 16 16 C 1.47348 * 119.99923 * 187.12776 * 14 9 7 17 17 C 1.39869 * 120.11870 * 12.06730 * 16 14 9 18 18 C 1.37590 * 119.92830 * 179.69464 * 17 16 14 19 19 C 1.39115 * 120.16700 * 0.58061 * 18 17 16 20 20 O 1.35712 * 119.88457 * 179.69346 * 19 18 17 21 21 C 1.38847 * 120.23139 * 359.71646 * 19 18 17 22 22 C 1.38036 * 120.06802 * 359.97438 * 21 19 18 23 23 F 1.35106 * 120.07872 * 179.97438 * 22 21 19 24 24 H 0.96997 * 119.99989 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.47533 * 204.71891 * 10 9 7 26 26 H 1.08996 * 109.47522 * 324.72610 * 10 9 7 27 27 H 0.96708 * 117.00149 * 180.02562 * 13 11 10 28 28 H 1.08002 * 120.03034 * 359.97438 * 17 16 14 29 29 H 1.08003 * 119.91396 * 180.29584 * 18 17 16 30 30 H 0.96704 * 114.00205 * 270.02761 * 20 19 18 31 31 H 1.08006 * 119.96399 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3139 0.0000 0.0000 3 14 2.2479 1.6178 0.0000 4 1 3.1016 1.6964 -1.2125 5 1 1.2829 2.7465 -0.0006 6 1 3.1016 1.6964 1.2126 7 6 2.0090 -1.2038 0.0005 8 1 2.6250 -1.4713 0.8463 9 7 1.9081 -2.0530 -1.0688 10 6 0.6583 -2.7769 -1.3139 11 6 -0.2844 -1.9005 -2.0976 12 8 0.0530 -0.7854 -2.4181 13 8 -1.4992 -2.3582 -2.4388 14 6 2.9586 -2.2231 -1.8958 15 8 4.0346 -1.7259 -1.6224 16 6 2.8037 -3.0111 -3.1312 17 6 1.5283 -3.3697 -3.5796 18 6 1.3879 -4.1001 -4.7371 19 6 2.5119 -4.4935 -5.4563 20 8 2.3670 -5.2192 -6.5939 21 6 3.7815 -4.1465 -5.0140 22 6 3.9332 -3.4084 -3.8575 23 9 5.1686 -3.0712 -3.4266 24 1 -0.4850 0.8400 0.0004 25 1 0.8686 -3.6832 -1.8818 26 1 0.1997 -3.0431 -0.3616 27 1 -2.0686 -1.7598 -2.9417 28 1 0.6545 -3.0695 -3.0203 29 1 0.4027 -4.3728 -5.0857 30 1 2.3648 -6.1758 -6.4526 31 1 4.6512 -4.4545 -5.5755 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601070207.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:00 Heat of formation + Delta-G solvation = -113.872307 kcal Electronic energy + Delta-G solvation = -22983.220564 eV Core-core repulsion = 19147.770325 eV Total energy + Delta-G solvation = -3835.450240 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.073 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -48.49211 -40.49806 -39.24784 -38.18600 -36.20665 -35.49148 -34.48612 -32.58901 -30.72240 -29.76201 -28.02278 -25.13913 -23.02369 -22.62044 -21.31626 -19.78246 -18.75433 -17.49429 -17.25042 -16.56083 -16.49992 -16.21141 -15.88133 -15.49408 -15.29471 -14.73532 -14.64759 -14.17550 -13.75906 -13.57988 -13.27692 -13.05281 -12.37630 -12.17570 -12.01683 -11.84840 -11.76566 -11.33777 -11.12196 -10.74032 -10.54665 -10.29806 -10.21858 -9.77130 -8.87361 -8.75369 -8.46058 -8.24453 -7.47316 -6.92422 -4.06212 0.87706 1.22523 2.97359 3.16963 3.27875 3.39893 3.57821 3.66642 3.90810 4.10515 4.35058 4.53716 4.57826 4.72584 4.83317 5.03445 5.30273 5.35269 5.58214 5.67376 6.00819 6.06625 6.12987 6.22241 6.27409 6.30735 6.77098 7.16707 7.28389 7.48638 8.40137 8.52274 8.71080 9.06393 9.13085 9.92404 10.13138 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.019767 B = 0.007547 C = 0.005916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.175260 B = 3709.390864 C = 4731.866315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.749 5.749 2 C 0.159 3.841 3 Si 0.847 3.153 4 H -0.265 1.265 5 H -0.293 1.293 6 H -0.269 1.269 7 C -0.449 4.449 8 H 0.091 0.909 9 N -0.412 5.412 10 C 0.082 3.918 11 C 0.461 3.539 12 O -0.480 6.480 13 O -0.534 6.534 14 C 0.522 3.478 15 O -0.533 6.533 16 C -0.156 4.156 17 C -0.095 4.095 18 C -0.161 4.161 19 C 0.140 3.860 20 O -0.495 6.495 21 C -0.195 4.195 22 C 0.165 3.835 23 F -0.113 7.113 24 H 0.277 0.723 25 H 0.106 0.894 26 H 0.112 0.888 27 H 0.397 0.603 28 H 0.169 0.831 29 H 0.137 0.863 30 H 0.392 0.608 31 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.369 -10.851 -8.505 14.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.371 5.371 2 C -0.066 4.066 3 Si 0.670 3.330 4 H -0.190 1.190 5 H -0.219 1.219 6 H -0.193 1.193 7 C -0.569 4.569 8 H 0.108 0.892 9 N -0.134 5.134 10 C -0.042 4.042 11 C 0.301 3.699 12 O -0.363 6.363 13 O -0.346 6.346 14 C 0.311 3.689 15 O -0.413 6.413 16 C -0.161 4.161 17 C -0.113 4.113 18 C -0.180 4.180 19 C 0.095 3.905 20 O -0.306 6.306 21 C -0.214 4.214 22 C 0.144 3.856 23 F -0.091 7.091 24 H 0.087 0.913 25 H 0.123 0.877 26 H 0.130 0.870 27 H 0.254 0.746 28 H 0.186 0.814 29 H 0.155 0.845 30 H 0.249 0.751 31 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -2.667 -9.917 -8.431 13.287 hybrid contribution -0.035 0.993 -0.219 1.017 sum -2.701 -8.924 -8.650 12.718 Atomic orbital electron populations 1.70457 1.09605 1.30334 1.26754 1.25464 0.92816 0.99897 0.88417 0.87384 0.82644 0.82571 0.80425 1.19004 1.21943 1.19339 1.18096 1.38661 0.99179 1.00974 0.89196 1.42653 1.06903 1.39560 1.24263 1.22391 0.88010 0.93131 1.00675 1.24031 0.80530 0.87950 0.77421 1.90685 1.75767 1.20225 1.49661 1.84560 1.28640 1.50819 1.70614 1.18243 0.86499 0.82328 0.81854 1.90697 1.25743 1.50773 1.74068 1.20781 0.92729 1.02654 0.99900 1.22718 0.98060 0.95150 0.95378 1.21417 0.98938 1.02520 0.95135 1.18249 0.91222 0.95109 0.85928 1.84767 1.95379 1.22161 1.28257 1.21263 0.98687 1.04429 0.97038 1.17465 0.80020 0.95379 0.92766 1.91589 1.38645 1.89793 1.89078 0.91280 0.87682 0.87026 0.74565 0.81437 0.84488 0.75102 0.83960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -19.38 10.98 55.50 0.61 -18.77 16 2 C 0.16 4.30 4.33 -17.46 -0.08 4.23 16 3 Si 0.85 21.54 29.69 -169.99 -5.05 16.49 16 4 H -0.27 -7.30 7.11 56.52 0.40 -6.90 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.45 -12.43 8.22 -14.99 -0.12 -12.55 16 8 H 0.09 2.60 8.06 -52.49 -0.42 2.17 16 9 N -0.41 -10.31 2.13 -126.93 -0.27 -10.58 16 10 C 0.08 1.65 5.28 -5.20 -0.03 1.62 16 11 C 0.46 9.30 4.77 36.01 0.17 9.47 16 12 O -0.48 -11.61 14.53 -18.75 -0.27 -11.88 16 13 O -0.53 -8.26 13.39 -39.25 -0.53 -8.79 16 14 C 0.52 13.22 7.52 -12.55 -0.09 13.12 16 15 O -0.53 -15.39 15.41 5.24 0.08 -15.31 16 16 C -0.16 -3.19 5.74 -104.90 -0.60 -3.79 16 17 C -0.10 -1.62 7.53 -39.21 -0.30 -1.91 16 18 C -0.16 -2.21 9.96 -39.49 -0.39 -2.60 16 19 C 0.14 1.85 6.71 -39.03 -0.26 1.58 16 20 O -0.50 -5.19 13.49 -18.84 -0.25 -5.45 16 21 C -0.19 -2.84 9.95 -39.43 -0.39 -3.24 16 22 C 0.16 3.07 7.26 -38.98 -0.28 2.79 16 23 F -0.11 -2.33 15.62 2.25 0.04 -2.30 16 24 H 0.28 6.82 8.31 -40.82 -0.34 6.48 16 25 H 0.11 1.76 4.61 -51.93 -0.24 1.52 16 26 H 0.11 2.20 8.08 -51.93 -0.42 1.78 16 27 H 0.40 4.59 9.10 45.56 0.41 5.00 16 28 H 0.17 2.88 1.71 -70.95 -0.12 2.76 16 29 H 0.14 1.50 8.06 -52.48 -0.42 1.08 16 30 H 0.39 1.98 9.06 45.56 0.41 2.40 16 31 H 0.14 1.73 8.06 -52.48 -0.42 1.31 16 LS Contribution 278.87 15.07 4.20 4.20 Total: -1.00 -34.92 278.87 -4.17 -39.09 By element: Atomic # 1 Polarization: 4.92 SS G_CDS: -0.36 Total: 4.56 kcal Atomic # 6 Polarization: 11.10 SS G_CDS: -2.38 Total: 8.73 kcal Atomic # 7 Polarization: -29.69 SS G_CDS: 0.34 Total: -29.35 kcal Atomic # 8 Polarization: -40.46 SS G_CDS: -0.97 Total: -41.43 kcal Atomic # 9 Polarization: -2.33 SS G_CDS: 0.04 Total: -2.30 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.05 Total: 16.49 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -34.92 -4.17 -39.09 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601070207.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.778 kcal (2) G-P(sol) polarization free energy of solvation -34.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds