Wall clock time and date at job start Tue Mar 31 2020 06:09:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31392 * 1 3 3 Si 1.86804 * 119.99891 * 2 1 4 4 H 1.48499 * 109.46924 * 239.99961 * 3 2 1 5 5 H 1.48498 * 109.47102 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.46870 * 119.99946 * 3 2 1 7 7 C 1.39006 * 120.00001 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00183 * 244.70667 * 7 2 1 9 9 N 1.36921 * 119.99956 * 64.43391 * 7 2 1 10 10 C 1.46496 * 119.99895 * 289.36563 * 9 7 2 11 11 C 1.50701 * 109.47076 * 84.72144 * 10 9 7 12 12 O 1.20828 * 119.99832 * 359.97438 * 11 10 9 13 13 O 1.34225 * 120.00105 * 180.02562 * 11 10 9 14 14 C 1.34775 * 120.00210 * 109.36889 * 9 7 2 15 15 O 1.21641 * 119.99951 * 7.12042 * 14 9 7 16 16 C 1.47348 * 119.99923 * 187.12776 * 14 9 7 17 17 C 1.39869 * 120.11870 * 12.06730 * 16 14 9 18 18 C 1.37590 * 119.92830 * 179.69464 * 17 16 14 19 19 C 1.39115 * 120.16700 * 0.58061 * 18 17 16 20 20 O 1.35712 * 119.88457 * 179.69346 * 19 18 17 21 21 C 1.38847 * 120.23139 * 359.71646 * 19 18 17 22 22 C 1.38036 * 120.06802 * 359.97438 * 21 19 18 23 23 F 1.35106 * 120.07872 * 179.97438 * 22 21 19 24 24 H 0.96997 * 119.99989 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.47533 * 204.71891 * 10 9 7 26 26 H 1.08996 * 109.47522 * 324.72610 * 10 9 7 27 27 H 0.96708 * 117.00149 * 180.02562 * 13 11 10 28 28 H 1.08002 * 120.03034 * 359.97438 * 17 16 14 29 29 H 1.08003 * 119.91396 * 180.29584 * 18 17 16 30 30 H 0.96704 * 114.00205 * 270.02761 * 20 19 18 31 31 H 1.08006 * 119.96399 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3139 0.0000 0.0000 3 14 2.2479 1.6178 0.0000 4 1 3.1016 1.6964 -1.2125 5 1 1.2829 2.7465 -0.0006 6 1 3.1016 1.6964 1.2126 7 6 2.0090 -1.2038 0.0005 8 1 2.6250 -1.4713 0.8463 9 7 1.9081 -2.0530 -1.0688 10 6 0.6583 -2.7769 -1.3139 11 6 -0.2844 -1.9005 -2.0976 12 8 0.0530 -0.7854 -2.4181 13 8 -1.4992 -2.3582 -2.4388 14 6 2.9586 -2.2231 -1.8958 15 8 4.0346 -1.7259 -1.6224 16 6 2.8037 -3.0111 -3.1312 17 6 1.5283 -3.3697 -3.5796 18 6 1.3879 -4.1001 -4.7371 19 6 2.5119 -4.4935 -5.4563 20 8 2.3670 -5.2192 -6.5939 21 6 3.7815 -4.1465 -5.0140 22 6 3.9332 -3.4084 -3.8575 23 9 5.1686 -3.0712 -3.4266 24 1 -0.4850 0.8400 0.0004 25 1 0.8686 -3.6832 -1.8818 26 1 0.1997 -3.0431 -0.3616 27 1 -2.0686 -1.7598 -2.9417 28 1 0.6545 -3.0695 -3.0203 29 1 0.4027 -4.3728 -5.0857 30 1 2.3648 -6.1758 -6.4526 31 1 4.6512 -4.4545 -5.5755 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601070207.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:59 Heat of formation + Delta-G solvation = -141.755916 kcal Electronic energy + Delta-G solvation = -22984.429688 eV Core-core repulsion = 19147.770325 eV Total energy + Delta-G solvation = -3836.659364 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.073 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.95824 -42.04280 -40.53108 -39.77469 -37.42029 -37.08805 -36.29213 -34.51006 -32.09216 -31.09399 -29.67357 -26.99572 -24.39649 -23.98060 -22.85538 -21.44673 -19.85560 -19.25942 -18.85890 -18.11900 -17.77852 -17.70855 -17.38156 -16.94778 -16.72762 -16.62930 -16.04891 -15.87792 -15.37887 -15.15311 -14.72374 -14.56090 -14.13605 -13.86068 -13.61537 -13.59014 -13.15640 -12.94171 -12.67143 -12.33605 -12.29590 -12.16914 -11.55164 -11.43753 -10.70789 -10.30793 -10.06256 -9.79402 -9.41802 -8.96233 -6.14706 -0.41539 -0.00121 1.18934 1.31556 1.41964 1.46957 1.77299 2.08455 2.29956 2.49798 2.67011 2.83756 2.94210 3.34285 3.59319 3.76666 3.95257 4.07600 4.14906 4.48409 4.63113 4.66105 4.81740 4.89408 5.05262 5.10495 5.24042 5.58650 5.83411 6.31315 6.62556 6.79744 7.06534 7.12881 7.27907 7.96836 8.07625 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.019767 B = 0.007547 C = 0.005916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.175260 B = 3709.390864 C = 4731.866315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.740 5.740 2 C 0.144 3.856 3 Si 0.871 3.129 4 H -0.303 1.303 5 H -0.269 1.269 6 H -0.265 1.265 7 C -0.480 4.480 8 H 0.060 0.940 9 N -0.425 5.425 10 C 0.081 3.919 11 C 0.473 3.527 12 O -0.526 6.526 13 O -0.511 6.511 14 C 0.507 3.493 15 O -0.592 6.592 16 C -0.192 4.192 17 C -0.095 4.095 18 C -0.145 4.145 19 C 0.172 3.828 20 O -0.490 6.490 21 C -0.183 4.183 22 C 0.140 3.860 23 F -0.136 7.136 24 H 0.284 0.716 25 H 0.146 0.854 26 H 0.115 0.885 27 H 0.420 0.580 28 H 0.166 0.834 29 H 0.178 0.822 30 H 0.423 0.577 31 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.717 -13.004 -11.193 18.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.362 5.362 2 C -0.082 4.082 3 Si 0.695 3.305 4 H -0.231 1.231 5 H -0.194 1.194 6 H -0.190 1.190 7 C -0.600 4.600 8 H 0.078 0.922 9 N -0.145 5.145 10 C -0.042 4.042 11 C 0.314 3.686 12 O -0.413 6.413 13 O -0.324 6.324 14 C 0.298 3.702 15 O -0.476 6.476 16 C -0.196 4.196 17 C -0.112 4.112 18 C -0.163 4.163 19 C 0.126 3.874 20 O -0.306 6.306 21 C -0.202 4.202 22 C 0.120 3.880 23 F -0.114 7.114 24 H 0.095 0.905 25 H 0.162 0.838 26 H 0.133 0.867 27 H 0.281 0.719 28 H 0.182 0.818 29 H 0.195 0.805 30 H 0.285 0.715 31 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -5.100 -12.117 -11.108 17.211 hybrid contribution 0.628 1.478 0.398 1.655 sum -4.472 -10.639 -10.710 15.745 Atomic orbital electron populations 1.70366 1.09226 1.30915 1.25719 1.25589 0.93332 1.00288 0.88960 0.86980 0.82305 0.82584 0.78618 1.23099 1.19423 1.18998 1.17840 1.39498 1.01494 1.01142 0.92222 1.42670 1.08575 1.39610 1.23642 1.22441 0.85926 0.93933 1.01891 1.23754 0.81432 0.86867 0.76524 1.90685 1.76907 1.22043 1.51709 1.84474 1.26880 1.50702 1.70341 1.19077 0.85754 0.82141 0.83202 1.90628 1.27844 1.53351 1.75782 1.20448 0.95148 1.05200 0.98795 1.22591 0.96115 0.95673 0.96854 1.21758 1.01010 1.00265 0.93247 1.18210 0.90228 0.93548 0.85371 1.84715 1.95023 1.24470 1.26348 1.21508 1.00698 1.02701 0.95335 1.17823 0.78848 0.96988 0.94355 1.91525 1.39926 1.90336 1.89640 0.90483 0.83761 0.86702 0.71944 0.81756 0.80483 0.71464 0.81324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -38.19 10.98 21.67 0.24 -37.95 16 2 C 0.14 7.98 4.33 84.94 0.37 8.35 16 3 Si 0.87 45.25 29.69 68.60 2.04 47.28 16 4 H -0.30 -17.64 7.11 99.48 0.71 -16.93 16 5 H -0.27 -12.79 7.11 99.48 0.71 -12.08 16 6 H -0.27 -13.47 7.11 99.48 0.71 -12.76 16 7 C -0.48 -27.85 8.22 84.08 0.69 -27.15 16 8 H 0.06 3.72 8.06 -2.91 -0.02 3.70 16 9 N -0.42 -21.96 2.13 -673.74 -1.43 -23.39 16 10 C 0.08 3.23 5.28 85.63 0.45 3.68 16 11 C 0.47 18.24 4.77 71.24 0.34 18.58 16 12 O -0.53 -25.12 14.53 21.96 0.32 -24.80 16 13 O -0.51 -13.91 13.39 -51.37 -0.69 -14.60 16 14 C 0.51 26.91 7.52 86.64 0.65 27.56 16 15 O -0.59 -36.69 15.41 -4.16 -0.06 -36.75 16 16 C -0.19 -7.85 5.74 -20.05 -0.12 -7.97 16 17 C -0.09 -2.97 7.53 22.51 0.17 -2.80 16 18 C -0.14 -3.22 9.96 22.33 0.22 -3.00 16 19 C 0.17 3.65 6.71 22.63 0.15 3.80 16 20 O -0.49 -7.09 13.49 -90.33 -1.22 -8.31 16 21 C -0.18 -4.78 9.95 22.37 0.22 -4.55 16 22 C 0.14 5.22 7.26 22.66 0.16 5.39 16 23 F -0.14 -5.87 15.62 44.97 0.70 -5.16 16 24 H 0.28 13.78 8.31 -92.71 -0.77 13.01 16 25 H 0.15 4.57 4.61 -2.39 -0.01 4.55 16 26 H 0.12 4.45 8.08 -2.39 -0.02 4.43 16 27 H 0.42 7.98 9.10 -74.05 -0.67 7.30 16 28 H 0.17 5.21 1.71 -20.25 -0.03 5.18 16 29 H 0.18 2.60 8.06 -2.91 -0.02 2.57 16 30 H 0.42 1.30 9.06 -74.05 -0.67 0.63 16 31 H 0.17 3.45 8.06 -2.91 -0.02 3.43 16 Total: -1.00 -81.84 278.87 3.08 -78.76 By element: Atomic # 1 Polarization: 3.17 SS G_CDS: -0.13 Total: 3.04 kcal Atomic # 6 Polarization: 18.56 SS G_CDS: 3.32 Total: 21.88 kcal Atomic # 7 Polarization: -60.15 SS G_CDS: -1.20 Total: -61.35 kcal Atomic # 8 Polarization: -82.81 SS G_CDS: -1.65 Total: -84.46 kcal Atomic # 9 Polarization: -5.87 SS G_CDS: 0.70 Total: -5.16 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.04 Total: 47.28 kcal Total: -81.84 3.08 -78.76 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601070207.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.998 kcal (2) G-P(sol) polarization free energy of solvation -81.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds