Wall clock time and date at job start Tue Mar 31 2020 06:10:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31371 * 1 3 3 Si 1.86808 * 119.99992 * 2 1 4 4 H 1.48496 * 109.47206 * 275.32073 * 3 2 1 5 5 H 1.48493 * 109.46900 * 35.32516 * 3 2 1 6 6 H 1.48511 * 109.46849 * 155.32291 * 3 2 1 7 7 C 1.39032 * 120.00162 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99528 * 335.79874 * 7 2 1 9 9 N 1.36893 * 120.00358 * 155.80255 * 7 2 1 10 10 C 1.46502 * 119.99682 * 324.21431 * 9 7 2 11 11 C 1.50697 * 109.47145 * 269.99924 * 10 9 7 12 12 O 1.20832 * 119.99904 * 0.02562 * 11 10 9 13 13 O 1.34225 * 120.00452 * 180.02562 * 11 10 9 14 14 C 1.34768 * 120.00143 * 144.21402 * 9 7 2 15 15 O 1.21609 * 120.00228 * 185.37739 * 14 9 7 16 16 C 1.47593 * 120.00203 * 5.38219 * 14 9 7 17 17 C 1.39778 * 120.14638 * 321.70462 * 16 14 9 18 18 C 1.37828 * 119.97454 * 180.02562 * 17 16 14 19 19 C 1.38426 * 120.28031 * 0.02562 * 18 17 16 20 20 C 1.38643 * 120.29263 * 359.97438 * 19 18 17 21 21 O 1.35959 * 119.99143 * 179.73088 * 20 19 18 22 22 C 1.38789 * 120.01949 * 0.02562 * 20 19 18 23 23 F 1.35098 * 120.13696 * 179.97438 * 22 20 19 24 24 H 0.97002 * 119.99517 * 0.02562 * 1 2 3 25 25 H 1.08991 * 109.47196 * 30.00107 * 10 9 7 26 26 H 1.08997 * 109.46962 * 149.99898 * 10 9 7 27 27 H 0.96700 * 117.00722 * 179.97438 * 13 11 10 28 28 H 1.07995 * 120.01192 * 0.03916 * 17 16 14 29 29 H 1.08010 * 119.86147 * 179.97438 * 18 17 16 30 30 H 1.07998 * 119.85899 * 179.97438 * 19 18 17 31 31 H 0.96705 * 114.00351 * 89.99540 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3137 0.0000 0.0000 3 14 2.2477 1.6178 0.0000 4 1 2.3828 2.1114 -1.3940 5 1 1.5060 2.6175 0.8095 6 1 3.5971 1.4103 0.5846 7 6 2.0089 -1.2040 -0.0005 8 1 1.5400 -2.0984 0.3825 9 7 3.2876 -1.2559 -0.4865 10 6 3.6693 -0.4287 -1.6338 11 6 3.4227 -1.1935 -2.9086 12 8 2.9736 -2.3144 -2.8635 13 8 3.7018 -0.6296 -4.0943 14 6 4.1953 -2.0680 0.0905 15 8 5.3543 -2.0427 -0.2768 16 6 3.7828 -2.9881 1.1683 17 6 2.8455 -2.5782 2.1208 18 6 2.4632 -3.4402 3.1260 19 6 3.0042 -4.7123 3.1980 20 6 3.9348 -5.1306 2.2593 21 8 4.4663 -6.3794 2.3390 22 6 4.3286 -4.2727 1.2418 23 9 5.2356 -4.6777 0.3261 24 1 -0.4849 0.8401 -0.0004 25 1 3.0745 0.4846 -1.6371 26 1 4.7266 -0.1735 -1.5619 27 1 3.5272 -1.1592 -4.8844 28 1 2.4208 -1.5866 2.0688 29 1 1.7390 -3.1214 3.8613 30 1 2.7001 -5.3820 3.9888 31 1 3.9677 -7.0509 1.8535 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601071504.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:03 Heat of formation + Delta-G solvation = -159.072475 kcal Electronic energy + Delta-G solvation = -22678.826567 eV Core-core repulsion = 18841.416301 eV Total energy + Delta-G solvation = -3837.410266 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.073 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -48.35510 -40.07573 -39.28230 -38.34965 -36.25126 -35.65469 -35.02370 -32.24301 -30.81938 -29.42915 -28.03528 -25.35078 -23.36044 -22.28794 -21.44229 -19.66631 -18.48251 -17.68946 -17.57084 -16.88612 -16.58764 -16.19171 -15.69019 -15.47765 -15.14939 -14.99225 -14.56615 -14.21906 -13.88581 -13.71202 -13.07096 -12.92750 -12.80106 -12.55126 -12.17256 -11.80089 -11.63791 -11.27350 -11.11386 -11.05375 -10.60307 -10.57792 -10.22047 -10.04984 -9.52134 -8.94635 -8.50068 -8.31686 -8.10111 -6.73304 -4.30172 1.22967 1.46691 2.78060 2.85174 3.02777 3.10671 3.15168 3.51919 3.86884 3.93753 4.11665 4.37822 4.64187 4.73955 5.16299 5.34418 5.49377 5.59012 5.64835 5.77083 5.85776 6.05886 6.28351 6.35725 6.73316 6.74634 6.91454 6.95436 7.05263 7.74106 7.74576 7.99820 8.43605 8.62666 8.99311 9.30634 10.34743 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.017534 B = 0.007644 C = 0.006021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.499070 B = 3662.222245 C = 4649.101093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.838 5.838 2 C 0.068 3.932 3 Si 0.856 3.144 4 H -0.268 1.268 5 H -0.277 1.277 6 H -0.253 1.253 7 C -0.355 4.355 8 H 0.116 0.884 9 N -0.437 5.437 10 C 0.107 3.893 11 C 0.465 3.535 12 O -0.496 6.496 13 O -0.525 6.525 14 C 0.532 3.468 15 O -0.575 6.575 16 C -0.120 4.120 17 C -0.040 4.040 18 C -0.134 4.134 19 C -0.106 4.106 20 C 0.046 3.954 21 O -0.489 6.489 22 C 0.116 3.884 23 F -0.122 7.122 24 H 0.280 0.720 25 H 0.109 0.891 26 H 0.117 0.883 27 H 0.401 0.599 28 H 0.169 0.831 29 H 0.135 0.865 30 H 0.133 0.867 31 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.897 -2.909 2.347 4.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C -0.142 4.142 3 Si 0.682 3.318 4 H -0.194 1.194 5 H -0.203 1.203 6 H -0.176 1.176 7 C -0.481 4.481 8 H 0.134 0.866 9 N -0.157 5.157 10 C -0.018 4.018 11 C 0.304 3.696 12 O -0.381 6.381 13 O -0.337 6.337 14 C 0.322 3.678 15 O -0.459 6.459 16 C -0.124 4.124 17 C -0.058 4.058 18 C -0.153 4.153 19 C -0.125 4.125 20 C 0.000 4.000 21 O -0.298 6.298 22 C 0.095 3.905 23 F -0.101 7.101 24 H 0.090 0.910 25 H 0.126 0.874 26 H 0.135 0.865 27 H 0.259 0.741 28 H 0.186 0.814 29 H 0.152 0.848 30 H 0.151 0.849 31 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 2.674 -2.604 2.838 4.689 hybrid contribution -0.285 0.134 -1.182 1.224 sum 2.388 -2.469 1.656 3.814 Atomic orbital electron populations 1.69782 1.06266 1.28691 1.42309 1.25316 0.95089 0.98384 0.95401 0.87239 0.81940 0.83779 0.78851 1.19447 1.20332 1.17608 1.19261 0.87736 0.97475 1.43621 0.86644 1.43154 1.11219 1.38276 1.23056 1.21309 1.04014 0.94360 0.82109 1.24329 0.73905 0.86089 0.85248 1.90685 1.40178 1.19941 1.87286 1.84553 1.80663 1.51440 1.17060 1.17856 0.84612 0.82756 0.82558 1.90701 1.18169 1.70974 1.66037 1.19835 1.00324 0.93108 0.99139 1.22049 0.91425 1.02126 0.90219 1.21085 1.01287 0.93452 0.99440 1.21344 0.95174 0.97498 0.98473 1.18173 0.99072 0.86546 0.96178 1.84882 1.54089 1.15590 1.75279 1.18147 0.91011 0.93159 0.88166 1.91510 1.63827 1.90380 1.64338 0.90966 0.87394 0.86516 0.74127 0.81364 0.84761 0.84878 0.75960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -21.09 13.95 55.50 0.77 -20.32 16 2 C 0.07 1.63 5.28 -17.45 -0.09 1.53 16 3 Si 0.86 17.90 25.10 -169.99 -4.27 13.63 16 4 H -0.27 -5.38 6.64 56.52 0.38 -5.00 16 5 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 6 H -0.25 -5.27 7.11 56.52 0.40 -4.87 16 7 C -0.35 -8.62 6.96 -15.00 -0.10 -8.72 16 8 H 0.12 2.96 6.20 -52.48 -0.33 2.63 16 9 N -0.44 -10.38 1.68 -117.26 -0.20 -10.57 16 10 C 0.11 2.32 4.87 -5.19 -0.03 2.29 16 11 C 0.46 9.85 8.40 36.00 0.30 10.15 16 12 O -0.50 -12.11 17.19 -18.75 -0.32 -12.43 16 13 O -0.53 -8.66 13.42 -39.24 -0.53 -9.19 16 14 C 0.53 12.87 7.20 -12.45 -0.09 12.78 16 15 O -0.58 -14.96 15.75 5.27 0.08 -14.88 16 16 C -0.12 -2.58 5.39 -104.93 -0.57 -3.14 16 17 C -0.04 -0.74 7.65 -39.16 -0.30 -1.04 16 18 C -0.13 -2.02 10.02 -39.66 -0.40 -2.42 16 19 C -0.11 -1.52 9.97 -39.36 -0.39 -1.91 16 20 C 0.05 0.77 6.70 -39.23 -0.26 0.50 16 21 O -0.49 -7.17 13.37 -19.61 -0.26 -7.43 16 22 C 0.12 2.37 7.25 -38.81 -0.28 2.09 16 23 F -0.12 -2.72 16.04 2.25 0.04 -2.68 16 24 H 0.28 6.54 8.31 -40.82 -0.34 6.20 16 25 H 0.11 2.27 3.17 -51.93 -0.16 2.10 16 26 H 0.12 2.35 7.35 -51.93 -0.38 1.97 16 27 H 0.40 4.64 9.10 45.56 0.41 5.05 16 28 H 0.17 3.26 5.91 -52.49 -0.31 2.95 16 29 H 0.13 1.61 8.06 -52.48 -0.42 1.19 16 30 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16 31 H 0.39 3.76 9.06 45.56 0.41 4.17 16 LS Contribution 282.29 15.07 4.25 4.25 Total: -1.00 -32.41 282.29 -3.00 -35.40 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -0.36 Total: 12.11 kcal Atomic # 6 Polarization: 14.32 SS G_CDS: -2.21 Total: 12.11 kcal Atomic # 7 Polarization: -31.47 SS G_CDS: 0.58 Total: -30.89 kcal Atomic # 8 Polarization: -42.90 SS G_CDS: -1.03 Total: -43.93 kcal Atomic # 9 Polarization: -2.72 SS G_CDS: 0.04 Total: -2.68 kcal Atomic # 14 Polarization: 17.90 SS G_CDS: -4.27 Total: 13.63 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -32.41 -3.00 -35.40 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601071504.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.669 kcal (2) G-P(sol) polarization free energy of solvation -32.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds