Wall clock time and date at job start Tue Mar 31 2020 06:10:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31371 * 1 3 3 Si 1.86808 * 119.99992 * 2 1 4 4 H 1.48496 * 109.47206 * 275.32073 * 3 2 1 5 5 H 1.48493 * 109.46900 * 35.32516 * 3 2 1 6 6 H 1.48511 * 109.46849 * 155.32291 * 3 2 1 7 7 C 1.39032 * 120.00162 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99528 * 335.79874 * 7 2 1 9 9 N 1.36893 * 120.00358 * 155.80255 * 7 2 1 10 10 C 1.46502 * 119.99682 * 324.21431 * 9 7 2 11 11 C 1.50697 * 109.47145 * 269.99924 * 10 9 7 12 12 O 1.20832 * 119.99904 * 0.02562 * 11 10 9 13 13 O 1.34225 * 120.00452 * 180.02562 * 11 10 9 14 14 C 1.34768 * 120.00143 * 144.21402 * 9 7 2 15 15 O 1.21609 * 120.00228 * 185.37739 * 14 9 7 16 16 C 1.47593 * 120.00203 * 5.38219 * 14 9 7 17 17 C 1.39778 * 120.14638 * 321.70462 * 16 14 9 18 18 C 1.37828 * 119.97454 * 180.02562 * 17 16 14 19 19 C 1.38426 * 120.28031 * 0.02562 * 18 17 16 20 20 C 1.38643 * 120.29263 * 359.97438 * 19 18 17 21 21 O 1.35959 * 119.99143 * 179.73088 * 20 19 18 22 22 C 1.38789 * 120.01949 * 0.02562 * 20 19 18 23 23 F 1.35098 * 120.13696 * 179.97438 * 22 20 19 24 24 H 0.97002 * 119.99517 * 0.02562 * 1 2 3 25 25 H 1.08991 * 109.47196 * 30.00107 * 10 9 7 26 26 H 1.08997 * 109.46962 * 149.99898 * 10 9 7 27 27 H 0.96700 * 117.00722 * 179.97438 * 13 11 10 28 28 H 1.07995 * 120.01192 * 0.03916 * 17 16 14 29 29 H 1.08010 * 119.86147 * 179.97438 * 18 17 16 30 30 H 1.07998 * 119.85899 * 179.97438 * 19 18 17 31 31 H 0.96705 * 114.00351 * 89.99540 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3137 0.0000 0.0000 3 14 2.2477 1.6178 0.0000 4 1 2.3828 2.1114 -1.3940 5 1 1.5060 2.6175 0.8095 6 1 3.5971 1.4103 0.5846 7 6 2.0089 -1.2040 -0.0005 8 1 1.5400 -2.0984 0.3825 9 7 3.2876 -1.2559 -0.4865 10 6 3.6693 -0.4287 -1.6338 11 6 3.4227 -1.1935 -2.9086 12 8 2.9736 -2.3144 -2.8635 13 8 3.7018 -0.6296 -4.0943 14 6 4.1953 -2.0680 0.0905 15 8 5.3543 -2.0427 -0.2768 16 6 3.7828 -2.9881 1.1683 17 6 2.8455 -2.5782 2.1208 18 6 2.4632 -3.4402 3.1260 19 6 3.0042 -4.7123 3.1980 20 6 3.9348 -5.1306 2.2593 21 8 4.4663 -6.3794 2.3390 22 6 4.3286 -4.2727 1.2418 23 9 5.2356 -4.6777 0.3261 24 1 -0.4849 0.8401 -0.0004 25 1 3.0745 0.4846 -1.6371 26 1 4.7266 -0.1735 -1.5619 27 1 3.5272 -1.1592 -4.8844 28 1 2.4208 -1.5866 2.0688 29 1 1.7390 -3.1214 3.8613 30 1 2.7001 -5.3820 3.9888 31 1 3.9677 -7.0509 1.8535 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601071504.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:03 Heat of formation + Delta-G solvation = -184.636529 kcal Electronic energy + Delta-G solvation = -22679.935107 eV Core-core repulsion = 18841.416301 eV Total energy + Delta-G solvation = -3838.518807 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.073 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.93490 -41.76684 -40.78731 -39.85003 -37.55368 -37.31509 -36.80078 -34.09805 -32.26619 -30.82048 -29.64854 -27.17630 -24.86867 -23.68119 -22.99094 -21.34206 -20.02666 -19.32456 -19.14228 -18.36601 -18.20185 -17.66268 -17.36229 -17.04015 -16.75889 -16.65889 -16.09806 -15.69028 -15.49339 -15.27643 -14.61332 -14.53268 -14.48186 -14.21955 -13.68091 -13.36598 -13.08464 -12.84042 -12.67300 -12.59686 -12.28674 -11.94369 -11.89424 -11.79413 -11.27750 -10.72770 -10.06035 -9.90617 -9.57168 -8.57145 -6.18317 -0.18029 0.12487 1.09925 1.18011 1.33855 1.45119 1.50873 1.96943 2.13168 2.38449 2.57015 2.96809 3.01727 3.34070 3.71570 3.85746 4.04524 4.07484 4.15986 4.30881 4.39402 4.73652 4.97073 5.07734 5.13109 5.34860 5.42186 5.51123 5.76549 5.92417 6.10844 6.69925 6.78137 6.92075 7.14406 7.48384 8.53965 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.017534 B = 0.007644 C = 0.006021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.499070 B = 3662.222245 C = 4649.101093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.039 3.961 3 Si 0.903 3.097 4 H -0.250 1.250 5 H -0.270 1.270 6 H -0.256 1.256 7 C -0.355 4.355 8 H 0.094 0.906 9 N -0.443 5.443 10 C 0.095 3.905 11 C 0.471 3.529 12 O -0.536 6.536 13 O -0.506 6.506 14 C 0.520 3.480 15 O -0.607 6.607 16 C -0.154 4.154 17 C -0.051 4.051 18 C -0.117 4.117 19 C -0.084 4.084 20 C 0.058 3.942 21 O -0.493 6.493 22 C 0.079 3.921 23 F -0.144 7.144 24 H 0.286 0.714 25 H 0.117 0.883 26 H 0.129 0.871 27 H 0.426 0.574 28 H 0.155 0.845 29 H 0.174 0.826 30 H 0.181 0.819 31 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.423 -2.959 3.532 4.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C -0.168 4.168 3 Si 0.727 3.273 4 H -0.176 1.176 5 H -0.195 1.195 6 H -0.179 1.179 7 C -0.481 4.481 8 H 0.112 0.888 9 N -0.162 5.162 10 C -0.029 4.029 11 C 0.312 3.688 12 O -0.425 6.425 13 O -0.319 6.319 14 C 0.312 3.688 15 O -0.493 6.493 16 C -0.157 4.157 17 C -0.070 4.070 18 C -0.134 4.134 19 C -0.103 4.103 20 C 0.012 3.988 21 O -0.305 6.305 22 C 0.058 3.942 23 F -0.123 7.123 24 H 0.096 0.904 25 H 0.134 0.866 26 H 0.147 0.853 27 H 0.288 0.712 28 H 0.172 0.828 29 H 0.191 0.809 30 H 0.198 0.802 31 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges 2.185 -2.651 3.978 5.257 hybrid contribution -0.151 0.052 -1.554 1.562 sum 2.035 -2.599 2.425 4.095 Atomic orbital electron populations 1.69827 1.07439 1.29797 1.43599 1.25771 0.95494 1.00719 0.94844 0.86476 0.80593 0.80422 0.79820 1.17621 1.19504 1.17946 1.19072 0.87723 0.97201 1.44134 0.88840 1.43216 1.10861 1.38454 1.23669 1.21468 1.04878 0.94436 0.82125 1.24134 0.73010 0.85296 0.86348 1.90676 1.42226 1.21562 1.88042 1.84471 1.79594 1.51064 1.16773 1.18434 0.84315 0.83027 0.83047 1.90643 1.19274 1.72043 1.67348 1.19853 1.02573 0.93580 0.99723 1.21971 0.91399 1.02430 0.91171 1.21499 1.00687 0.92870 0.98381 1.21804 0.92916 0.97499 0.98052 1.18302 0.98522 0.86845 0.95094 1.84821 1.54949 1.15204 1.75535 1.18603 0.92003 0.93980 0.89577 1.91438 1.64827 1.90549 1.65455 0.90389 0.86588 0.85339 0.71219 0.82797 0.80884 0.80191 0.73206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -44.06 13.95 21.68 0.30 -43.76 16 2 C 0.04 1.87 5.28 84.95 0.45 2.32 16 3 Si 0.90 36.19 25.10 68.60 1.72 37.92 16 4 H -0.25 -9.31 6.64 99.48 0.66 -8.65 16 5 H -0.27 -10.43 7.11 99.48 0.71 -9.72 16 6 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 7 C -0.35 -17.64 6.96 84.09 0.59 -17.05 16 8 H 0.09 4.98 6.20 -2.91 -0.02 4.96 16 9 N -0.44 -21.50 1.68 -643.17 -1.08 -22.58 16 10 C 0.10 4.13 4.87 85.63 0.42 4.54 16 11 C 0.47 19.89 8.40 71.23 0.60 20.49 16 12 O -0.54 -26.68 17.19 21.95 0.38 -26.30 16 13 O -0.51 -15.80 13.42 -51.37 -0.69 -16.49 16 14 C 0.52 26.11 7.20 86.71 0.62 26.73 16 15 O -0.61 -32.83 15.75 -4.06 -0.06 -32.90 16 16 C -0.15 -6.77 5.39 -20.07 -0.11 -6.88 16 17 C -0.05 -1.90 7.65 22.55 0.17 -1.73 16 18 C -0.12 -3.17 10.02 22.22 0.22 -2.94 16 19 C -0.08 -2.09 9.97 22.41 0.22 -1.87 16 20 C 0.06 1.83 6.70 22.50 0.15 1.99 16 21 O -0.49 -13.20 13.37 -93.09 -1.24 -14.44 16 22 C 0.08 3.28 7.25 22.77 0.17 3.44 16 23 F -0.14 -6.66 16.04 44.97 0.72 -5.94 16 24 H 0.29 13.28 8.31 -92.71 -0.77 12.51 16 25 H 0.12 4.76 3.17 -2.39 -0.01 4.75 16 26 H 0.13 5.19 7.35 -2.39 -0.02 5.17 16 27 H 0.43 8.95 9.10 -74.06 -0.67 8.28 16 28 H 0.15 6.09 5.91 -2.91 -0.02 6.07 16 29 H 0.17 3.37 8.06 -2.91 -0.02 3.34 16 30 H 0.18 2.86 8.06 -2.91 -0.02 2.84 16 31 H 0.41 6.86 9.06 -74.05 -0.67 6.18 16 Total: -1.00 -72.72 282.29 3.39 -69.32 By element: Atomic # 1 Polarization: 26.26 SS G_CDS: -0.15 Total: 26.12 kcal Atomic # 6 Polarization: 25.55 SS G_CDS: 3.50 Total: 29.05 kcal Atomic # 7 Polarization: -65.56 SS G_CDS: -0.78 Total: -66.34 kcal Atomic # 8 Polarization: -88.51 SS G_CDS: -1.62 Total: -90.13 kcal Atomic # 9 Polarization: -6.66 SS G_CDS: 0.72 Total: -5.94 kcal Atomic # 14 Polarization: 36.19 SS G_CDS: 1.72 Total: 37.92 kcal Total: -72.72 3.39 -69.32 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601071504.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.316 kcal (2) G-P(sol) polarization free energy of solvation -72.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds