Wall clock time and date at job start Tue Mar 31 2020 06:08:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31383 * 1 3 3 Si 1.86805 * 119.99784 * 2 1 4 4 H 1.48504 * 109.47010 * 275.24573 * 3 2 1 5 5 H 1.48504 * 109.47178 * 35.24646 * 3 2 1 6 6 H 1.48500 * 109.46824 * 155.24508 * 3 2 1 7 7 C 1.39019 * 120.00067 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99782 * 350.19583 * 7 2 1 9 9 N 1.36906 * 119.99865 * 170.20506 * 7 2 1 10 10 C 1.46497 * 119.99846 * 310.86356 * 9 7 2 11 11 C 1.50704 * 109.47016 * 264.72393 * 10 9 7 12 12 O 1.20826 * 119.99980 * 0.02562 * 11 10 9 13 13 O 1.34229 * 119.99898 * 180.02562 * 11 10 9 14 14 C 1.34779 * 119.99954 * 130.86669 * 9 7 2 15 15 O 1.21631 * 119.99753 * 182.22155 * 14 9 7 16 16 C 1.47435 * 120.00394 * 2.22158 * 14 9 7 17 17 C 1.39814 * 120.18409 * 307.99182 * 16 14 9 18 18 C 1.37746 * 119.94087 * 179.97438 * 17 16 14 19 19 C 1.38570 * 120.32389 * 359.97438 * 18 17 16 20 20 C 1.38235 * 120.37720 * 359.76070 * 19 18 17 21 21 F 1.35100 * 119.97202 * 180.26142 * 20 19 18 22 22 C 1.38886 * 120.04583 * 0.51674 * 20 19 18 23 23 O 1.35717 * 120.16235 * 179.73961 * 22 20 19 24 24 H 0.96997 * 119.99951 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.47435 * 24.72727 * 10 9 7 26 26 H 1.09002 * 109.47122 * 144.72939 * 10 9 7 27 27 H 0.96693 * 117.00181 * 180.02562 * 13 11 10 28 28 H 1.07993 * 120.02779 * 359.94938 * 17 16 14 29 29 H 1.08000 * 119.83465 * 179.97438 * 18 17 16 30 30 H 1.07998 * 119.80711 * 180.02562 * 19 18 17 31 31 H 0.96704 * 113.99997 * 269.73166 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3138 0.0000 0.0000 3 14 2.2478 1.6178 0.0000 4 1 2.3844 2.1105 -1.3943 5 1 1.5050 2.6182 0.8080 6 1 3.5964 1.4108 0.5863 7 6 2.0089 -1.2039 0.0005 8 1 1.4807 -2.1324 0.1602 9 7 3.3630 -1.2126 -0.2012 10 6 3.9408 -0.4723 -1.3255 11 6 4.1288 -1.4027 -2.4960 12 8 3.8122 -2.5649 -2.4009 13 8 4.6481 -0.9404 -3.6442 14 6 4.1644 -1.9023 0.6346 15 8 5.3706 -1.8772 0.4795 16 6 3.5792 -2.6872 1.7370 17 6 2.6765 -2.0909 2.6226 18 6 2.1324 -2.8290 3.6504 19 6 2.4746 -4.1621 3.8118 20 6 3.3615 -4.7665 2.9407 21 9 3.6854 -6.0681 3.1025 22 6 3.9239 -4.0353 1.9024 23 8 4.7990 -4.6250 1.0490 24 1 -0.4850 0.8400 -0.0004 25 1 3.2701 0.3384 -1.6099 26 1 4.9057 -0.0593 -1.0311 27 1 4.7492 -1.5746 -4.3671 28 1 2.4065 -1.0523 2.5012 29 1 1.4356 -2.3665 4.3337 30 1 2.0426 -4.7331 4.6203 31 1 5.7232 -4.5600 1.3262 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601071517.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:54 Heat of formation + Delta-G solvation = -192.350207 kcal Electronic energy + Delta-G solvation = -22700.240903 eV Core-core repulsion = 18861.387606 eV Total energy + Delta-G solvation = -3838.853297 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.073 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.92142 -41.80089 -40.90318 -39.45864 -37.80696 -37.21667 -36.72113 -34.06806 -32.30333 -30.66951 -29.74735 -27.03567 -24.90683 -23.58602 -23.05330 -21.31689 -19.91771 -19.30905 -19.25773 -18.66221 -17.92136 -17.40896 -17.29005 -17.08057 -16.82532 -16.60286 -16.21038 -15.78881 -15.51323 -15.22553 -14.72234 -14.49181 -14.31065 -14.13760 -13.56084 -13.32798 -13.06058 -12.99313 -12.68633 -12.64140 -12.38981 -11.98944 -11.84822 -11.70413 -11.26849 -10.76896 -9.89887 -9.89149 -9.61456 -8.49705 -6.35010 -0.12360 0.10438 1.14581 1.23965 1.34097 1.44834 1.52371 2.05349 2.16445 2.38830 2.61511 2.94505 2.97023 3.34041 3.71992 3.93025 3.99843 4.12159 4.19250 4.31094 4.34984 4.66354 4.92034 5.05516 5.25295 5.27609 5.39001 5.55138 5.77269 5.98376 6.12311 6.60458 6.82964 6.95369 7.14399 7.50799 8.62155 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.016531 B = 0.008008 C = 0.006071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.360081 B = 3495.767196 C = 4610.953122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.040 3.960 3 Si 0.915 3.085 4 H -0.250 1.250 5 H -0.271 1.271 6 H -0.251 1.251 7 C -0.341 4.341 8 H 0.063 0.937 9 N -0.452 5.452 10 C 0.099 3.901 11 C 0.470 3.530 12 O -0.538 6.538 13 O -0.506 6.506 14 C 0.545 3.455 15 O -0.597 6.597 16 C -0.124 4.124 17 C -0.054 4.054 18 C -0.100 4.100 19 C -0.110 4.110 20 C 0.047 3.953 21 F -0.138 7.138 22 C 0.092 3.908 23 O -0.498 6.498 24 H 0.285 0.715 25 H 0.117 0.883 26 H 0.128 0.872 27 H 0.425 0.575 28 H 0.137 0.863 29 H 0.176 0.824 30 H 0.178 0.822 31 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.856 0.225 4.894 6.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.166 4.166 3 Si 0.737 3.263 4 H -0.175 1.175 5 H -0.197 1.197 6 H -0.174 1.174 7 C -0.469 4.469 8 H 0.081 0.919 9 N -0.173 5.173 10 C -0.026 4.026 11 C 0.311 3.689 12 O -0.427 6.427 13 O -0.319 6.319 14 C 0.336 3.664 15 O -0.482 6.482 16 C -0.127 4.127 17 C -0.073 4.073 18 C -0.118 4.118 19 C -0.128 4.128 20 C 0.027 3.973 21 F -0.117 7.117 22 C 0.046 3.954 23 O -0.310 6.310 24 H 0.095 0.905 25 H 0.135 0.865 26 H 0.145 0.855 27 H 0.287 0.713 28 H 0.154 0.846 29 H 0.193 0.807 30 H 0.196 0.804 31 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges 4.644 0.129 4.796 6.678 hybrid contribution 0.559 -0.083 -0.825 1.000 sum 5.204 0.046 3.971 6.546 Atomic orbital electron populations 1.69727 1.07508 1.29658 1.45629 1.26015 0.95734 1.01107 0.93777 0.86241 0.80282 0.79504 0.80269 1.17460 1.19659 1.17411 1.18644 0.80216 0.94612 1.53402 0.91877 1.43221 1.07061 1.46259 1.20765 1.21505 1.02986 0.93649 0.84419 1.24236 0.72287 0.88044 0.84299 1.90701 1.47928 1.20744 1.83366 1.84475 1.75856 1.47893 1.23719 1.18465 0.85464 0.80467 0.82029 1.90608 1.15160 1.66975 1.75458 1.20048 1.01644 0.93113 0.97896 1.21470 0.91788 1.01632 0.92438 1.21345 0.99633 0.92969 0.97835 1.21542 0.96095 0.96016 0.99177 1.17981 1.02566 0.79239 0.97496 1.91455 1.91896 1.33167 1.95181 1.18554 0.96062 0.89900 0.90932 1.84732 1.20747 1.77413 1.48110 0.90487 0.86508 0.85452 0.71341 0.84550 0.80678 0.80436 0.73702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -46.03 13.96 21.68 0.30 -45.72 16 2 C 0.04 1.94 5.40 84.95 0.46 2.39 16 3 Si 0.91 36.11 24.86 68.60 1.71 37.81 16 4 H -0.25 -9.13 6.91 99.48 0.69 -8.45 16 5 H -0.27 -10.39 7.11 99.48 0.71 -9.69 16 6 H -0.25 -9.70 7.00 99.48 0.70 -9.00 16 7 C -0.34 -17.44 7.11 84.09 0.60 -16.84 16 8 H 0.06 3.71 7.75 -2.91 -0.02 3.69 16 9 N -0.45 -21.64 1.56 -643.30 -1.00 -22.64 16 10 C 0.10 4.13 4.39 85.63 0.38 4.51 16 11 C 0.47 19.41 8.36 71.24 0.60 20.01 16 12 O -0.54 -26.74 17.07 21.96 0.37 -26.36 16 13 O -0.51 -15.32 13.42 -51.41 -0.69 -16.01 16 14 C 0.54 26.10 6.67 86.67 0.58 26.68 16 15 O -0.60 -29.57 16.32 1.51 0.02 -29.54 16 16 C -0.12 -5.29 5.02 -20.02 -0.10 -5.39 16 17 C -0.05 -2.00 8.32 22.53 0.19 -1.81 16 18 C -0.10 -2.78 10.02 22.23 0.22 -2.56 16 19 C -0.11 -2.92 10.01 22.35 0.22 -2.69 16 20 C 0.05 1.58 7.30 22.42 0.16 1.74 16 21 F -0.14 -4.55 17.11 44.97 0.77 -3.78 16 22 C 0.09 3.70 6.71 22.88 0.15 3.86 16 23 O -0.50 -20.35 12.50 -84.75 -1.06 -21.41 16 24 H 0.28 13.53 8.31 -92.71 -0.77 12.76 16 25 H 0.12 4.62 4.25 -2.39 -0.01 4.61 16 26 H 0.13 4.85 7.55 -2.39 -0.02 4.84 16 27 H 0.43 8.68 9.10 -74.06 -0.67 8.01 16 28 H 0.14 5.19 7.28 -2.91 -0.02 5.17 16 29 H 0.18 3.46 8.06 -2.91 -0.02 3.44 16 30 H 0.18 3.22 8.06 -2.91 -0.02 3.20 16 31 H 0.40 13.02 9.06 -74.05 -0.67 12.35 16 Total: -1.00 -70.59 286.52 3.74 -66.85 By element: Atomic # 1 Polarization: 31.06 SS G_CDS: -0.14 Total: 30.91 kcal Atomic # 6 Polarization: 26.43 SS G_CDS: 3.46 Total: 29.89 kcal Atomic # 7 Polarization: -67.67 SS G_CDS: -0.70 Total: -68.37 kcal Atomic # 8 Polarization: -91.97 SS G_CDS: -1.35 Total: -93.32 kcal Atomic # 9 Polarization: -4.55 SS G_CDS: 0.77 Total: -3.78 kcal Atomic # 14 Polarization: 36.11 SS G_CDS: 1.71 Total: 37.81 kcal Total: -70.59 3.74 -66.85 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601071517.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.496 kcal (2) G-P(sol) polarization free energy of solvation -70.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -196.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds