Wall clock time and date at job start Tue Mar 31 2020 06:48:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.46950 * 2 1 4 4 C 1.50699 * 109.47204 * 119.99996 * 2 1 3 5 5 H 1.08001 * 119.99567 * 120.00393 * 4 2 1 6 6 C 1.37877 * 120.00280 * 299.99636 * 4 2 1 7 7 N 1.31511 * 119.99867 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00055 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47101 * 359.97438 * 8 6 4 10 10 H 1.48494 * 109.47236 * 120.00507 * 8 6 4 11 11 H 1.48504 * 109.47025 * 240.00449 * 8 6 4 12 12 N 1.46497 * 109.46939 * 240.00225 * 2 1 3 13 13 C 1.34780 * 119.99921 * 84.99751 * 12 2 1 14 14 O 1.21639 * 120.00068 * 0.02562 * 13 12 2 15 15 C 1.47189 * 119.99846 * 179.97438 * 13 12 2 16 16 C 1.44427 * 123.46036 * 0.04115 * 15 13 12 17 17 C 1.32770 * 113.08208 * 179.97438 * 16 15 13 18 18 S 1.75509 * 110.57646 * 359.97438 * 17 16 15 19 19 C 1.36011 * 123.46294 * 179.97438 * 15 13 12 20 20 C 1.50701 * 124.58693 * 0.07174 * 19 15 13 21 21 C 1.50707 * 109.46757 * 89.98492 * 20 19 15 22 22 O 1.20821 * 120.00181 * 0.02562 * 21 20 19 23 23 O 1.34227 * 119.99696 * 179.97438 * 21 20 19 24 24 H 1.08999 * 109.46950 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47078 * 299.99688 * 1 2 3 26 26 H 1.08993 * 109.47724 * 59.99772 * 1 2 3 27 27 H 0.97005 * 119.99855 * 180.02562 * 7 6 4 28 28 H 0.96998 * 119.99801 * 264.99413 * 12 2 1 29 29 H 1.08002 * 123.45783 * 359.97438 * 16 15 13 30 30 H 1.08007 * 124.71200 * 180.26441 * 17 16 15 31 31 H 1.09001 * 109.47159 * 209.97896 * 20 19 15 32 32 H 1.09003 * 109.47684 * 329.98580 * 20 19 15 33 33 H 0.96707 * 117.00125 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6994 -0.2394 2.4827 7 7 0.9430 0.8296 2.6034 8 14 2.3227 -1.1195 4.0079 9 1 3.1475 -2.2864 3.6036 10 1 3.1474 -0.1858 4.8160 11 1 1.1680 -1.5867 4.8165 12 7 2.0183 -0.6906 -1.1962 13 6 2.1469 -0.0181 -2.3572 14 8 1.8581 1.1622 -2.4116 15 6 2.6381 -0.7118 -3.5589 16 6 3.0023 -2.1093 -3.5787 17 6 3.4180 -2.5220 -4.7702 18 16 3.3793 -1.2034 -5.9278 19 6 2.7943 -0.1030 -4.7650 20 6 2.4920 1.3482 -5.0363 21 6 3.7260 2.1746 -4.7805 22 8 4.7463 1.6400 -4.4158 23 8 3.6919 3.5046 -4.9588 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 0.7090 1.1613 3.4845 28 1 2.2490 -1.6317 -1.1526 29 1 2.9426 -2.7525 -2.7131 30 1 3.7316 -3.5304 -4.9968 31 1 2.1841 1.4671 -6.0752 32 1 1.6890 1.6813 -4.3788 33 1 4.5079 3.9924 -4.7818 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604061380.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:05 Heat of formation + Delta-G solvation = -102.540119 kcal Electronic energy + Delta-G solvation = -19866.195396 eV Core-core repulsion = 16597.449733 eV Total energy + Delta-G solvation = -3268.745663 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.22105 -39.20260 -36.76196 -35.94247 -34.85264 -32.63883 -32.03530 -29.25566 -27.52429 -25.27111 -24.29370 -21.72732 -21.55549 -20.25538 -18.97596 -18.03418 -17.28235 -16.94205 -16.36102 -15.69977 -15.56540 -15.21802 -14.60759 -14.21443 -13.71897 -13.27544 -13.16509 -13.04692 -12.72474 -12.41185 -12.32655 -11.72611 -11.66707 -11.35372 -11.11909 -11.00237 -10.96752 -10.73890 -10.49402 -10.30855 -10.24439 -9.09647 -9.04699 -8.85892 -8.56376 -8.38332 -7.88944 -6.13000 -4.22031 0.82086 1.52267 1.91432 2.18330 2.37265 3.21683 3.23809 3.31592 3.34462 3.95886 4.15513 4.39533 4.51290 4.96301 4.99851 5.19741 5.41341 5.46606 5.52640 5.74229 6.01539 6.12431 6.31002 6.58911 6.82132 6.95678 7.13592 7.43180 7.55098 7.68888 7.90809 7.99958 8.13766 8.63782 8.76453 9.07534 9.45367 10.93128 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.020974 B = 0.004749 C = 0.004255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.692052 B = 5895.008317 C = 6578.245425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.264 3.736 3 H 0.050 0.950 4 C -0.533 4.533 5 H 0.062 0.938 6 C 0.066 3.934 7 N -0.883 5.883 8 Si 0.902 3.098 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.282 1.282 12 N -0.697 5.697 13 C 0.563 3.437 14 O -0.555 6.555 15 C -0.135 4.135 16 C -0.105 4.105 17 C -0.228 4.228 18 S 0.171 5.829 19 C -0.151 4.151 20 C -0.051 4.051 21 C 0.491 3.509 22 O -0.509 6.509 23 O -0.516 6.516 24 H 0.027 0.973 25 H 0.091 0.909 26 H 0.015 0.985 27 H 0.264 0.736 28 H 0.389 0.611 29 H 0.152 0.848 30 H 0.168 0.832 31 H 0.110 0.890 32 H 0.152 0.848 33 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.323 -3.368 -17.149 17.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.162 3.838 3 H 0.068 0.932 4 C -0.571 4.571 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.729 3.271 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.208 1.208 12 N -0.343 5.343 13 C 0.348 3.652 14 O -0.436 6.436 15 C -0.152 4.152 16 C -0.134 4.134 17 C -0.363 4.363 18 S 0.437 5.563 19 C -0.271 4.271 20 C -0.090 4.090 21 C 0.333 3.667 22 O -0.396 6.396 23 O -0.328 6.328 24 H 0.046 0.954 25 H 0.109 0.891 26 H 0.034 0.966 27 H 0.074 0.926 28 H 0.222 0.778 29 H 0.169 0.831 30 H 0.186 0.814 31 H 0.128 0.872 32 H 0.170 0.830 33 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 3.315 -2.702 -18.494 18.982 hybrid contribution 0.649 -0.792 2.656 2.847 sum 3.964 -3.494 -15.838 16.696 Atomic orbital electron populations 1.22073 0.98265 0.99183 1.00968 1.18795 0.91113 0.94052 0.79822 0.93231 1.21246 1.32376 1.13243 0.90286 0.92020 1.24882 0.94790 0.94957 0.99063 1.69912 1.35917 1.22475 1.23783 0.86385 0.78602 0.79538 0.82532 1.19731 1.20863 1.20849 1.46427 1.64113 1.13559 1.10217 1.17548 0.78441 0.86415 0.82820 1.90652 1.52693 1.15535 1.84751 1.20532 1.05924 0.94008 0.94731 1.21286 0.99788 0.93939 0.98397 1.25359 1.10558 1.03188 0.97146 1.82743 1.62411 0.98716 1.12413 1.23613 1.06041 0.99445 0.98021 1.19884 0.96642 0.87035 1.05453 1.23033 0.89816 0.80760 0.73118 1.90725 1.33716 1.72778 1.42362 1.84497 1.44865 1.21360 1.82054 0.95427 0.89082 0.96562 0.92620 0.77811 0.83095 0.81421 0.87207 0.83046 0.73251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.64 9.26 37.16 0.34 -3.29 16 2 C 0.26 6.79 2.56 -69.08 -0.18 6.61 16 3 H 0.05 1.47 7.58 -51.93 -0.39 1.08 16 4 C -0.53 -14.25 8.73 -34.44 -0.30 -14.55 16 5 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.70 16 7 N -0.88 -24.95 11.32 55.43 0.63 -24.33 16 8 Si 0.90 20.76 29.54 -169.99 -5.02 15.74 16 9 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 12 N -0.70 -14.98 5.05 -56.08 -0.28 -15.27 16 13 C 0.56 11.81 7.76 -12.62 -0.10 11.71 16 14 O -0.55 -13.04 13.70 5.24 0.07 -12.97 16 15 C -0.13 -2.27 5.98 -104.63 -0.63 -2.90 16 16 C -0.10 -1.43 9.91 -39.02 -0.39 -1.81 16 17 C -0.23 -2.57 11.12 28.86 0.32 -2.25 16 18 S 0.17 1.95 22.97 -107.50 -2.47 -0.52 16 19 C -0.15 -2.26 4.84 -35.11 -0.17 -2.43 16 20 C -0.05 -0.72 5.54 -29.03 -0.16 -0.88 16 21 C 0.49 7.52 8.30 36.01 0.30 7.82 16 22 O -0.51 -9.34 16.79 -18.75 -0.31 -9.65 16 23 O -0.52 -6.37 13.42 -39.25 -0.53 -6.89 16 24 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.09 2.46 6.07 -51.93 -0.32 2.14 16 26 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 28 H 0.39 7.28 7.08 -40.82 -0.29 6.99 16 29 H 0.15 1.80 7.10 -52.49 -0.37 1.43 16 30 H 0.17 1.36 8.06 -52.48 -0.42 0.93 16 31 H 0.11 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.15 2.40 5.94 -51.93 -0.31 2.09 16 33 H 0.41 3.30 9.10 45.56 0.41 3.71 16 LS Contribution 304.79 15.07 4.59 4.59 Total: -1.00 -33.53 304.79 -6.87 -40.39 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -2.50 Total: 9.18 kcal Atomic # 6 Polarization: 0.77 SS G_CDS: -1.05 Total: -0.28 kcal Atomic # 7 Polarization: -39.94 SS G_CDS: 0.34 Total: -39.59 kcal Atomic # 8 Polarization: -28.75 SS G_CDS: -0.77 Total: -29.52 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Atomic # 16 Polarization: 1.95 SS G_CDS: -2.47 Total: -0.52 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -33.53 -6.87 -40.39 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604061380.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.146 kcal (2) G-P(sol) polarization free energy of solvation -33.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds