Wall clock time and date at job start Tue Mar 31 2020 06:48:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.46950 * 2 1 4 4 C 1.50699 * 109.47204 * 119.99996 * 2 1 3 5 5 H 1.08001 * 119.99567 * 120.00393 * 4 2 1 6 6 C 1.37877 * 120.00280 * 299.99636 * 4 2 1 7 7 N 1.31511 * 119.99867 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00055 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47101 * 359.97438 * 8 6 4 10 10 H 1.48494 * 109.47236 * 120.00507 * 8 6 4 11 11 H 1.48504 * 109.47025 * 240.00449 * 8 6 4 12 12 N 1.46497 * 109.46939 * 240.00225 * 2 1 3 13 13 C 1.34780 * 119.99921 * 84.99751 * 12 2 1 14 14 O 1.21639 * 120.00068 * 0.02562 * 13 12 2 15 15 C 1.47189 * 119.99846 * 179.97438 * 13 12 2 16 16 C 1.44427 * 123.46036 * 0.04115 * 15 13 12 17 17 C 1.32770 * 113.08208 * 179.97438 * 16 15 13 18 18 S 1.75509 * 110.57646 * 359.97438 * 17 16 15 19 19 C 1.36011 * 123.46294 * 179.97438 * 15 13 12 20 20 C 1.50701 * 124.58693 * 0.07174 * 19 15 13 21 21 C 1.50707 * 109.46757 * 89.98492 * 20 19 15 22 22 O 1.20821 * 120.00181 * 0.02562 * 21 20 19 23 23 O 1.34227 * 119.99696 * 179.97438 * 21 20 19 24 24 H 1.08999 * 109.46950 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47078 * 299.99688 * 1 2 3 26 26 H 1.08993 * 109.47724 * 59.99772 * 1 2 3 27 27 H 0.97005 * 119.99855 * 180.02562 * 7 6 4 28 28 H 0.96998 * 119.99801 * 264.99413 * 12 2 1 29 29 H 1.08002 * 123.45783 * 359.97438 * 16 15 13 30 30 H 1.08007 * 124.71200 * 180.26441 * 17 16 15 31 31 H 1.09001 * 109.47159 * 209.97896 * 20 19 15 32 32 H 1.09003 * 109.47684 * 329.98580 * 20 19 15 33 33 H 0.96707 * 117.00125 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6994 -0.2394 2.4827 7 7 0.9430 0.8296 2.6034 8 14 2.3227 -1.1195 4.0079 9 1 3.1475 -2.2864 3.6036 10 1 3.1474 -0.1858 4.8160 11 1 1.1680 -1.5867 4.8165 12 7 2.0183 -0.6906 -1.1962 13 6 2.1469 -0.0181 -2.3572 14 8 1.8581 1.1622 -2.4116 15 6 2.6381 -0.7118 -3.5589 16 6 3.0023 -2.1093 -3.5787 17 6 3.4180 -2.5220 -4.7702 18 16 3.3793 -1.2034 -5.9278 19 6 2.7943 -0.1030 -4.7650 20 6 2.4920 1.3482 -5.0363 21 6 3.7260 2.1746 -4.7805 22 8 4.7463 1.6400 -4.4158 23 8 3.6919 3.5046 -4.9588 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 0.7090 1.1613 3.4845 28 1 2.2490 -1.6317 -1.1526 29 1 2.9426 -2.7525 -2.7131 30 1 3.7316 -3.5304 -4.9968 31 1 2.1841 1.4671 -6.0752 32 1 1.6890 1.6813 -4.3788 33 1 4.5079 3.9924 -4.7818 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604061380.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:05 Heat of formation + Delta-G solvation = -126.787967 kcal Electronic energy + Delta-G solvation = -19867.246861 eV Core-core repulsion = 16597.449733 eV Total energy + Delta-G solvation = -3269.797129 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.44983 -40.67573 -38.03250 -37.08943 -36.71023 -34.42312 -33.30483 -31.11616 -28.74074 -27.35942 -25.61719 -23.18314 -22.64681 -21.95505 -20.53352 -19.20002 -18.66295 -18.30203 -17.55169 -17.31540 -17.00925 -16.68548 -16.28150 -15.80148 -15.17851 -14.52998 -14.48623 -14.34414 -14.21805 -13.85403 -13.69459 -13.41481 -12.99821 -12.88102 -12.76178 -12.71318 -12.51648 -12.29444 -12.13154 -12.00456 -11.73256 -11.11701 -10.74680 -10.58489 -9.95012 -9.76999 -9.28210 -8.19430 -6.36897 -0.28964 0.54004 0.92803 1.05889 1.18505 1.43272 1.44178 1.56447 2.14002 2.34755 2.51184 2.68848 3.11255 3.43548 3.89260 3.95881 4.29590 4.40924 4.49504 4.67234 4.73359 4.90142 4.99007 5.06951 5.08868 5.28119 5.42386 5.55618 5.58997 5.67397 5.89045 6.07880 6.70000 6.91705 6.94067 7.29327 7.48395 8.87282 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.020974 B = 0.004749 C = 0.004255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.692052 B = 5895.008317 C = 6578.245425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.271 3.729 3 H -0.002 1.002 4 C -0.548 4.548 5 H 0.071 0.929 6 C 0.015 3.985 7 N -0.917 5.917 8 Si 0.974 3.026 9 H -0.261 1.261 10 H -0.284 1.284 11 H -0.276 1.276 12 N -0.697 5.697 13 C 0.558 3.442 14 O -0.592 6.592 15 C -0.169 4.169 16 C -0.124 4.124 17 C -0.215 4.215 18 S 0.245 5.755 19 C -0.169 4.169 20 C -0.056 4.056 21 C 0.492 3.508 22 O -0.545 6.545 23 O -0.510 6.510 24 H 0.041 0.959 25 H 0.068 0.932 26 H 0.014 0.986 27 H 0.266 0.734 28 H 0.403 0.597 29 H 0.162 0.838 30 H 0.207 0.793 31 H 0.152 0.848 32 H 0.129 0.871 33 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.281 -5.544 -18.723 19.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.168 3.832 3 H 0.016 0.984 4 C -0.586 4.586 5 H 0.090 0.910 6 C -0.185 4.185 7 N -0.555 5.555 8 Si 0.798 3.202 9 H -0.185 1.185 10 H -0.210 1.210 11 H -0.201 1.201 12 N -0.344 5.344 13 C 0.345 3.655 14 O -0.476 6.476 15 C -0.187 4.187 16 C -0.152 4.152 17 C -0.350 4.350 18 S 0.513 5.487 19 C -0.289 4.289 20 C -0.094 4.094 21 C 0.335 3.665 22 O -0.436 6.436 23 O -0.323 6.323 24 H 0.060 0.940 25 H 0.086 0.914 26 H 0.033 0.967 27 H 0.075 0.925 28 H 0.238 0.762 29 H 0.180 0.820 30 H 0.224 0.776 31 H 0.170 0.830 32 H 0.146 0.854 33 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges 4.281 -4.889 -20.104 21.129 hybrid contribution 0.381 -0.029 2.982 3.007 sum 4.662 -4.918 -17.122 18.414 Atomic orbital electron populations 1.21877 0.97896 0.99550 0.99704 1.18382 0.91363 0.91826 0.81637 0.98435 1.21555 1.32616 1.13574 0.90826 0.91045 1.25799 0.94825 0.95590 1.02300 1.70056 1.36947 1.23903 1.24601 0.85274 0.78146 0.78479 0.78300 1.18453 1.21000 1.20143 1.46162 1.64659 1.14135 1.09491 1.18216 0.77437 0.86171 0.83713 1.90622 1.54124 1.17275 1.85541 1.20345 1.09041 0.95808 0.93510 1.21334 1.01244 0.92567 1.00076 1.25857 1.08185 1.04868 0.96113 1.82495 1.59599 0.96668 1.09974 1.23994 1.05500 1.00578 0.98844 1.19980 0.95354 0.86727 1.07389 1.23306 0.89635 0.81443 0.72124 1.90701 1.35104 1.73584 1.44199 1.84462 1.46162 1.20296 1.81394 0.94036 0.91368 0.96688 0.92484 0.76161 0.82035 0.77581 0.83035 0.85352 0.71156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.78 9.26 71.98 0.67 -6.11 16 2 C 0.27 14.53 2.56 44.25 0.11 14.64 16 3 H 0.00 -0.14 7.58 -2.39 -0.02 -0.16 16 4 C -0.55 -29.69 8.73 25.60 0.22 -29.47 16 5 H 0.07 3.64 7.74 -2.91 -0.02 3.62 16 6 C 0.01 0.81 5.30 84.66 0.45 1.26 16 7 N -0.92 -53.17 11.32 21.45 0.24 -52.93 16 8 Si 0.97 42.56 29.54 68.60 2.03 44.59 16 9 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 10 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 11 H -0.28 -11.70 7.11 99.48 0.71 -11.00 16 12 N -0.70 -30.84 5.05 -449.59 -2.27 -33.11 16 13 C 0.56 24.20 7.76 86.59 0.67 24.87 16 14 O -0.59 -29.38 13.70 -4.16 -0.06 -29.43 16 15 C -0.17 -5.66 5.98 -19.87 -0.12 -5.78 16 16 C -0.12 -3.15 9.91 22.67 0.22 -2.92 16 17 C -0.22 -4.05 11.12 66.64 0.74 -3.31 16 18 S 0.25 4.76 22.97 -56.49 -1.30 3.46 16 19 C -0.17 -4.84 4.84 25.17 0.12 -4.71 16 20 C -0.06 -1.53 5.54 29.10 0.16 -1.37 16 21 C 0.49 14.93 8.30 71.24 0.59 15.52 16 22 O -0.55 -20.01 16.79 21.98 0.37 -19.64 16 23 O -0.51 -12.27 13.42 -51.38 -0.69 -12.96 16 24 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 25 H 0.07 3.83 6.07 -2.39 -0.01 3.81 16 26 H 0.01 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.27 14.51 8.31 -92.70 -0.77 13.74 16 28 H 0.40 15.20 7.08 -92.71 -0.66 14.54 16 29 H 0.16 3.58 7.10 -2.91 -0.02 3.56 16 30 H 0.21 2.23 8.06 -2.91 -0.02 2.20 16 31 H 0.15 2.69 8.14 -2.39 -0.02 2.67 16 32 H 0.13 4.21 5.94 -2.39 -0.01 4.20 16 33 H 0.43 6.59 9.10 -74.05 -0.67 5.91 16 Total: -1.00 -75.50 304.79 2.02 -73.49 By element: Atomic # 1 Polarization: 24.09 SS G_CDS: -0.15 Total: 23.94 kcal Atomic # 6 Polarization: -1.24 SS G_CDS: 3.84 Total: 2.60 kcal Atomic # 7 Polarization: -84.01 SS G_CDS: -2.03 Total: -86.04 kcal Atomic # 8 Polarization: -61.66 SS G_CDS: -0.38 Total: -62.04 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.59 kcal Atomic # 16 Polarization: 4.76 SS G_CDS: -1.30 Total: 3.46 kcal Total: -75.50 2.02 -73.49 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604061380.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.301 kcal (2) G-P(sol) polarization free energy of solvation -75.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds