Wall clock time and date at job start Tue Mar 31 2020 06:33:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47134 * 2 1 4 4 H 1.08998 * 109.46931 * 305.26167 * 3 2 1 5 5 C 1.50705 * 109.47112 * 185.26204 * 3 2 1 6 6 H 1.07999 * 119.99488 * 245.25372 * 5 3 2 7 7 C 1.37877 * 119.99796 * 64.97146 * 5 3 2 8 8 N 1.31516 * 120.00098 * 6.91980 * 7 5 3 9 9 Si 1.86800 * 119.99543 * 186.91573 * 7 5 3 10 10 H 1.48491 * 109.47178 * 93.77339 * 9 7 5 11 11 H 1.48508 * 109.46791 * 213.77273 * 9 7 5 12 12 H 1.48505 * 109.47331 * 333.76786 * 9 7 5 13 13 N 1.46500 * 109.47221 * 65.26293 * 3 2 1 14 14 C 1.34780 * 119.99749 * 274.99929 * 13 3 2 15 15 O 1.21620 * 120.00058 * 0.02562 * 14 13 3 16 16 C 1.47205 * 120.00072 * 180.02562 * 14 13 3 17 17 C 1.36626 * 125.15718 * 180.02562 * 16 14 13 18 18 C 1.36770 * 114.74783 * 179.97438 * 17 16 14 19 19 C 1.36685 * 114.73842 * 0.02562 * 18 17 16 20 20 C 1.47012 * 125.16390 * 180.02562 * 19 18 17 21 21 O 1.21548 * 120.00367 * 359.97438 * 20 19 18 22 22 O 1.34834 * 119.99750 * 179.97438 * 20 19 18 23 23 S 1.75831 * 109.66868 * 359.75505 * 19 18 17 24 24 H 1.09004 * 109.46911 * 60.00511 * 1 2 3 25 25 H 1.08996 * 109.47341 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47574 * 300.00079 * 1 2 3 27 27 H 1.09004 * 109.47090 * 239.99512 * 2 1 3 28 28 H 1.08997 * 109.46795 * 119.99837 * 2 1 3 29 29 H 0.96997 * 119.99378 * 179.97438 * 8 7 5 30 30 H 0.97000 * 120.00183 * 95.00239 * 13 3 2 31 31 H 1.07995 * 122.62792 * 359.94809 * 17 16 14 32 32 H 1.08008 * 122.63020 * 179.97438 * 18 17 16 33 33 H 0.96699 * 116.99280 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6017 1.9827 -0.8391 5 6 3.5414 1.4445 -0.1303 6 1 4.1532 1.8106 0.6809 7 6 4.1339 0.9735 -1.2827 8 7 3.3915 0.6503 -2.3191 9 14 5.9912 0.7947 -1.3720 10 1 6.3735 -0.5912 -1.0006 11 1 6.4501 1.0810 -2.7551 12 1 6.6265 1.7524 -0.4315 13 7 1.6578 2.0956 1.2545 14 6 0.4410 2.6623 1.3757 15 8 -0.3399 2.6311 0.4438 16 6 0.0572 3.3190 2.6360 17 6 -1.1445 3.9242 2.8735 18 6 -1.2750 4.4677 4.1218 19 6 -0.1817 4.3173 4.9283 20 6 -0.0739 4.8104 6.3090 21 8 -1.0046 5.4050 6.8165 22 8 1.0576 4.6029 7.0125 23 16 1.0732 3.4378 4.0661 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.8933 -0.5139 -0.8900 28 1 1.8932 -0.5138 0.8900 29 1 3.8085 0.3193 -3.1299 30 1 2.2806 2.1201 1.9978 31 1 -1.9296 3.9703 2.1335 32 1 -2.1713 4.9765 4.4447 33 1 1.0813 4.9453 7.9166 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604980268.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:09 Heat of formation + Delta-G solvation = -100.990329 kcal Electronic energy + Delta-G solvation = -19375.933291 eV Core-core repulsion = 16107.254832 eV Total energy + Delta-G solvation = -3268.678459 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.35568 -39.34226 -37.40815 -36.25975 -35.12368 -32.53544 -31.35136 -30.10225 -27.33603 -25.92148 -23.27173 -22.64702 -21.39815 -19.68495 -19.12019 -19.00628 -18.05223 -16.64755 -16.19835 -15.95660 -15.64761 -15.31055 -14.77671 -14.45939 -13.98700 -13.43394 -13.23775 -12.98892 -12.74468 -12.44874 -12.11562 -11.86084 -11.57401 -11.41302 -11.26894 -11.05729 -10.94856 -10.85977 -10.43209 -10.29292 -9.79660 -9.38804 -9.18090 -9.04023 -8.79495 -8.57728 -8.03084 -6.21022 -4.28288 -0.08749 1.17406 1.61355 1.84701 2.65644 2.66682 3.21109 3.28639 3.30142 3.59979 3.77662 4.30850 4.88786 5.02053 5.12567 5.14169 5.24712 5.76312 5.93643 6.09640 6.11007 6.28123 6.32278 6.51800 6.91483 7.06660 7.17339 7.26378 7.48505 7.53309 7.61402 7.73410 7.97944 8.44045 8.65286 8.87709 9.37963 10.86851 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.024485 B = 0.004240 C = 0.003770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.280015 B = 6602.491255 C = 7425.923516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.122 4.122 3 C 0.268 3.732 4 H 0.060 0.940 5 C -0.540 4.540 6 H 0.062 0.938 7 C 0.070 3.930 8 N -0.879 5.879 9 Si 0.900 3.100 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.273 1.273 13 N -0.696 5.696 14 C 0.567 3.433 15 O -0.524 6.524 16 C -0.198 4.198 17 C -0.098 4.098 18 C -0.047 4.047 19 C -0.256 4.256 20 C 0.561 3.439 21 O -0.507 6.507 22 O -0.511 6.511 23 S 0.238 5.762 24 H 0.052 0.948 25 H 0.026 0.974 26 H 0.039 0.961 27 H 0.085 0.915 28 H 0.035 0.965 29 H 0.266 0.734 30 H 0.386 0.614 31 H 0.162 0.838 32 H 0.158 0.842 33 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.507 5.194 14.784 16.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.161 4.161 3 C 0.167 3.833 4 H 0.078 0.922 5 C -0.578 4.578 6 H 0.080 0.920 7 C -0.134 4.134 8 N -0.516 5.516 9 Si 0.727 3.273 10 H -0.205 1.205 11 H -0.211 1.211 12 H -0.198 1.198 13 N -0.344 5.344 14 C 0.349 3.651 15 O -0.403 6.403 16 C -0.321 4.321 17 C -0.130 4.130 18 C -0.081 4.081 19 C -0.376 4.376 20 C 0.404 3.596 21 O -0.397 6.397 22 O -0.323 6.323 23 S 0.507 5.493 24 H 0.071 0.929 25 H 0.045 0.955 26 H 0.058 0.942 27 H 0.104 0.896 28 H 0.054 0.946 29 H 0.075 0.925 30 H 0.219 0.781 31 H 0.180 0.820 32 H 0.175 0.825 33 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges -3.755 4.569 13.984 15.183 hybrid contribution -0.108 0.580 0.567 0.818 sum -3.863 5.149 14.551 15.911 Atomic orbital electron populations 1.21862 0.98014 0.98433 1.01457 1.21875 0.92985 0.99581 1.01620 1.18928 0.94791 0.89133 0.80410 0.92236 1.21167 0.90315 1.44141 1.02186 0.91963 1.24875 0.98622 0.94887 0.95005 1.69964 1.35485 1.42854 1.03263 0.86466 0.84777 0.78540 0.77531 1.20472 1.21061 1.19761 1.46510 1.13656 1.55279 1.18944 1.17064 0.83467 0.79449 0.85088 1.90810 1.51133 1.59587 1.38756 1.25756 0.99652 1.06935 0.99722 1.20524 0.97403 0.97994 0.97066 1.20557 0.97954 0.97677 0.91935 1.23604 1.02020 1.15064 0.96893 1.19425 0.79670 0.75697 0.84761 1.90926 1.39188 1.39361 1.70246 1.84595 1.39655 1.75780 1.32253 1.84356 1.14466 1.48396 1.02037 0.92857 0.95524 0.94152 0.89611 0.94586 0.92453 0.78093 0.82029 0.82456 0.72268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.98 8.52 37.16 0.32 -2.66 16 2 C -0.12 -2.81 5.49 -26.73 -0.15 -2.96 16 3 C 0.27 6.48 2.11 -69.08 -0.15 6.33 16 4 H 0.06 1.67 7.55 -51.93 -0.39 1.28 16 5 C -0.54 -13.76 8.67 -34.44 -0.30 -14.06 16 6 H 0.06 1.52 7.73 -52.49 -0.41 1.11 16 7 C 0.07 1.83 5.20 -17.82 -0.09 1.74 16 8 N -0.88 -24.07 12.00 55.43 0.67 -23.40 16 9 Si 0.90 20.04 29.54 -169.99 -5.02 15.02 16 10 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 11 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 12 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 13 N -0.70 -13.94 5.02 -56.08 -0.28 -14.22 16 14 C 0.57 10.88 6.38 -12.62 -0.08 10.80 16 15 O -0.52 -11.64 13.95 5.26 0.07 -11.56 16 16 C -0.20 -2.98 6.46 -36.52 -0.24 -3.22 16 17 C -0.10 -1.28 9.88 -40.70 -0.40 -1.69 16 18 C -0.05 -0.54 9.88 -40.67 -0.40 -0.94 16 19 C -0.26 -3.06 6.46 -36.59 -0.24 -3.30 16 20 C 0.56 6.36 8.32 34.29 0.29 6.65 16 21 O -0.51 -6.82 17.60 -19.30 -0.34 -7.16 16 22 O -0.51 -4.28 13.28 -40.86 -0.54 -4.83 16 23 S 0.24 2.92 22.17 -107.50 -2.38 0.54 16 24 H 0.05 1.21 7.86 -51.93 -0.41 0.80 16 25 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.04 0.83 5.64 -51.93 -0.29 0.54 16 27 H 0.09 2.18 6.65 -51.93 -0.35 1.84 16 28 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 30 H 0.39 6.80 7.63 -40.82 -0.31 6.49 16 31 H 0.16 1.99 8.04 -52.49 -0.42 1.57 16 32 H 0.16 1.52 8.04 -52.48 -0.42 1.10 16 33 H 0.42 1.42 9.11 45.56 0.42 1.83 16 LS Contribution 305.10 15.07 4.60 4.60 Total: -1.00 -30.82 305.10 -7.24 -38.06 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -2.56 Total: 6.26 kcal Atomic # 6 Polarization: -1.86 SS G_CDS: -1.44 Total: -3.30 kcal Atomic # 7 Polarization: -38.01 SS G_CDS: 0.38 Total: -37.62 kcal Atomic # 8 Polarization: -22.74 SS G_CDS: -0.81 Total: -23.55 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.02 kcal Atomic # 16 Polarization: 2.92 SS G_CDS: -2.38 Total: 0.54 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -30.82 -7.24 -38.06 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604980268.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.933 kcal (2) G-P(sol) polarization free energy of solvation -30.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds