Wall clock time and date at job start Tue Mar 31 2020 06:33:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47134 * 2 1 4 4 H 1.08998 * 109.46931 * 305.26167 * 3 2 1 5 5 C 1.50705 * 109.47112 * 185.26204 * 3 2 1 6 6 H 1.07999 * 119.99488 * 245.25372 * 5 3 2 7 7 C 1.37877 * 119.99796 * 64.97146 * 5 3 2 8 8 N 1.31516 * 120.00098 * 6.91980 * 7 5 3 9 9 Si 1.86800 * 119.99543 * 186.91573 * 7 5 3 10 10 H 1.48491 * 109.47178 * 93.77339 * 9 7 5 11 11 H 1.48508 * 109.46791 * 213.77273 * 9 7 5 12 12 H 1.48505 * 109.47331 * 333.76786 * 9 7 5 13 13 N 1.46500 * 109.47221 * 65.26293 * 3 2 1 14 14 C 1.34780 * 119.99749 * 274.99929 * 13 3 2 15 15 O 1.21620 * 120.00058 * 0.02562 * 14 13 3 16 16 C 1.47205 * 120.00072 * 180.02562 * 14 13 3 17 17 C 1.36626 * 125.15718 * 180.02562 * 16 14 13 18 18 C 1.36770 * 114.74783 * 179.97438 * 17 16 14 19 19 C 1.36685 * 114.73842 * 0.02562 * 18 17 16 20 20 C 1.47012 * 125.16390 * 180.02562 * 19 18 17 21 21 O 1.21548 * 120.00367 * 359.97438 * 20 19 18 22 22 O 1.34834 * 119.99750 * 179.97438 * 20 19 18 23 23 S 1.75831 * 109.66868 * 359.75505 * 19 18 17 24 24 H 1.09004 * 109.46911 * 60.00511 * 1 2 3 25 25 H 1.08996 * 109.47341 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47574 * 300.00079 * 1 2 3 27 27 H 1.09004 * 109.47090 * 239.99512 * 2 1 3 28 28 H 1.08997 * 109.46795 * 119.99837 * 2 1 3 29 29 H 0.96997 * 119.99378 * 179.97438 * 8 7 5 30 30 H 0.97000 * 120.00183 * 95.00239 * 13 3 2 31 31 H 1.07995 * 122.62792 * 359.94809 * 17 16 14 32 32 H 1.08008 * 122.63020 * 179.97438 * 18 17 16 33 33 H 0.96699 * 116.99280 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6017 1.9827 -0.8391 5 6 3.5414 1.4445 -0.1303 6 1 4.1532 1.8106 0.6809 7 6 4.1339 0.9735 -1.2827 8 7 3.3915 0.6503 -2.3191 9 14 5.9912 0.7947 -1.3720 10 1 6.3735 -0.5912 -1.0006 11 1 6.4501 1.0810 -2.7551 12 1 6.6265 1.7524 -0.4315 13 7 1.6578 2.0956 1.2545 14 6 0.4410 2.6623 1.3757 15 8 -0.3399 2.6311 0.4438 16 6 0.0572 3.3190 2.6360 17 6 -1.1445 3.9242 2.8735 18 6 -1.2750 4.4677 4.1218 19 6 -0.1817 4.3173 4.9283 20 6 -0.0739 4.8104 6.3090 21 8 -1.0046 5.4050 6.8165 22 8 1.0576 4.6029 7.0125 23 16 1.0732 3.4378 4.0661 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.8933 -0.5139 -0.8900 28 1 1.8932 -0.5138 0.8900 29 1 3.8085 0.3193 -3.1299 30 1 2.2806 2.1201 1.9978 31 1 -1.9296 3.9703 2.1335 32 1 -2.1713 4.9765 4.4447 33 1 1.0813 4.9453 7.9166 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604980268.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:09 Heat of formation + Delta-G solvation = -122.345799 kcal Electronic energy + Delta-G solvation = -19376.859334 eV Core-core repulsion = 16107.254832 eV Total energy + Delta-G solvation = -3269.604502 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.23040 -40.85654 -38.48468 -37.13112 -36.85097 -34.37809 -33.08612 -31.27738 -29.09466 -27.15101 -25.03286 -23.68553 -22.80954 -21.44214 -20.43503 -19.94772 -19.13196 -18.16014 -17.54543 -17.07390 -16.83619 -16.75924 -16.36422 -16.05118 -15.30423 -14.69483 -14.56376 -14.32844 -14.15954 -13.69240 -13.42623 -13.40586 -13.26201 -12.91224 -12.68153 -12.63996 -12.26317 -12.19638 -12.09717 -11.89322 -11.63639 -11.10563 -10.99826 -10.55275 -10.15947 -9.78108 -9.70919 -8.19293 -6.33683 -1.12969 0.15528 0.59187 0.84030 1.46140 1.46948 1.57147 1.70698 1.88995 2.17287 2.26184 2.49274 3.13054 3.79395 3.99255 4.13519 4.24151 4.46620 4.53561 4.70416 4.83356 4.91596 5.05613 5.12270 5.23811 5.39238 5.42635 5.44116 5.58018 5.73131 5.83611 6.04947 6.71944 6.79105 6.84132 7.24629 7.40829 8.89037 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.024485 B = 0.004240 C = 0.003770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.280015 B = 6602.491255 C = 7425.923516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.115 4.115 3 C 0.276 3.724 4 H 0.010 0.990 5 C -0.552 4.552 6 H 0.072 0.928 7 C 0.021 3.979 8 N -0.914 5.914 9 Si 0.967 3.033 10 H -0.272 1.272 11 H -0.288 1.288 12 H -0.262 1.262 13 N -0.697 5.697 14 C 0.569 3.431 15 O -0.563 6.563 16 C -0.238 4.238 17 C -0.080 4.080 18 C -0.046 4.046 19 C -0.252 4.252 20 C 0.569 3.431 21 O -0.528 6.528 22 O -0.503 6.503 23 S 0.275 5.725 24 H 0.029 0.971 25 H 0.049 0.951 26 H 0.044 0.956 27 H 0.058 0.942 28 H 0.049 0.951 29 H 0.266 0.734 30 H 0.399 0.601 31 H 0.165 0.835 32 H 0.179 0.821 33 H 0.441 0.559 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.806 5.603 17.343 18.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.154 4.154 3 C 0.173 3.827 4 H 0.028 0.972 5 C -0.590 4.590 6 H 0.091 0.909 7 C -0.180 4.180 8 N -0.552 5.552 9 Si 0.792 3.208 10 H -0.198 1.198 11 H -0.214 1.214 12 H -0.186 1.186 13 N -0.345 5.345 14 C 0.354 3.646 15 O -0.445 6.445 16 C -0.360 4.360 17 C -0.113 4.113 18 C -0.080 4.080 19 C -0.371 4.371 20 C 0.412 3.588 21 O -0.420 6.420 22 O -0.318 6.318 23 S 0.546 5.454 24 H 0.048 0.952 25 H 0.068 0.932 26 H 0.063 0.937 27 H 0.077 0.923 28 H 0.067 0.933 29 H 0.075 0.925 30 H 0.234 0.766 31 H 0.183 0.817 32 H 0.197 0.803 33 H 0.304 0.696 Dipole moment (debyes) X Y Z Total from point charges -3.021 4.987 16.611 17.605 hybrid contribution -0.353 0.526 -0.109 0.643 sum -3.374 5.513 16.502 17.723 Atomic orbital electron populations 1.21710 0.96655 0.99592 1.00507 1.21728 0.94128 0.98745 1.00797 1.18510 0.94119 0.89310 0.80722 0.97165 1.21529 0.91139 1.43811 1.02513 0.90948 1.25725 1.03112 0.94546 0.94637 1.70107 1.37404 1.43848 1.03839 0.85414 0.79278 0.78805 0.77345 1.19787 1.21381 1.18650 1.46236 1.14604 1.55655 1.18045 1.17480 0.82447 0.78551 0.86113 1.90782 1.52021 1.60926 1.40727 1.25253 1.01651 1.09622 0.99458 1.20670 0.96588 0.96395 0.97660 1.20680 0.98750 0.97571 0.91025 1.23900 1.01899 1.13926 0.97422 1.19245 0.79940 0.75119 0.84470 1.90931 1.40132 1.40340 1.70627 1.84549 1.37990 1.75393 1.33892 1.84173 1.13414 1.47775 1.00043 0.95202 0.93161 0.93669 0.92319 0.93266 0.92537 0.76617 0.81749 0.80329 0.69554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.49 8.52 71.98 0.61 -4.88 16 2 C -0.11 -5.41 5.49 30.59 0.17 -5.24 16 3 C 0.28 13.72 2.11 44.25 0.09 13.82 16 4 H 0.01 0.62 7.55 -2.39 -0.02 0.60 16 5 C -0.55 -28.36 8.67 25.60 0.22 -28.14 16 6 H 0.07 3.48 7.73 -2.91 -0.02 3.46 16 7 C 0.02 1.08 5.20 84.65 0.44 1.52 16 8 N -0.91 -51.50 12.00 21.45 0.26 -51.24 16 9 Si 0.97 41.00 29.54 68.60 2.03 43.03 16 10 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 11 H -0.29 -12.27 7.11 99.48 0.71 -11.56 16 12 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 13 N -0.70 -28.16 5.02 -449.59 -2.26 -30.41 16 14 C 0.57 22.10 6.38 86.60 0.55 22.66 16 15 O -0.56 -25.88 13.95 -4.09 -0.06 -25.94 16 16 C -0.24 -6.94 6.46 24.25 0.16 -6.79 16 17 C -0.08 -1.98 9.88 21.55 0.21 -1.77 16 18 C -0.05 -0.95 9.88 21.56 0.21 -0.74 16 19 C -0.25 -5.32 6.46 24.21 0.16 -5.17 16 20 C 0.57 11.16 8.32 70.12 0.58 11.74 16 21 O -0.53 -12.76 17.60 19.68 0.35 -12.41 16 22 O -0.50 -6.69 13.28 -57.46 -0.76 -7.45 16 23 S 0.28 6.17 22.17 -56.49 -1.25 4.92 16 24 H 0.03 1.39 7.86 -2.38 -0.02 1.37 16 25 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 26 H 0.04 1.88 5.64 -2.39 -0.01 1.86 16 27 H 0.06 3.08 6.65 -2.39 -0.02 3.06 16 28 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 29 H 0.27 14.19 8.31 -92.71 -0.77 13.42 16 30 H 0.40 13.82 7.63 -92.71 -0.71 13.12 16 31 H 0.17 3.91 8.04 -2.91 -0.02 3.89 16 32 H 0.18 2.92 8.04 -2.91 -0.02 2.90 16 33 H 0.44 1.38 9.11 -74.06 -0.67 0.70 16 Total: -1.00 -67.57 305.10 1.51 -66.06 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: -0.21 Total: 16.43 kcal Atomic # 6 Polarization: -6.40 SS G_CDS: 3.41 Total: -2.99 kcal Atomic # 7 Polarization: -79.65 SS G_CDS: -2.00 Total: -81.65 kcal Atomic # 8 Polarization: -45.33 SS G_CDS: -0.47 Total: -45.80 kcal Atomic # 14 Polarization: 41.00 SS G_CDS: 2.03 Total: 43.03 kcal Atomic # 16 Polarization: 6.17 SS G_CDS: -1.25 Total: 4.92 kcal Total: -67.57 1.51 -66.06 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604980268.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.282 kcal (2) G-P(sol) polarization free energy of solvation -67.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds