Wall clock time and date at job start Tue Mar 31 2020 06:33:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.46729 * 2 1 4 4 H 1.09004 * 109.47261 * 55.00056 * 3 2 1 5 5 C 1.50699 * 109.47078 * 175.00091 * 3 2 1 6 6 H 1.08003 * 119.99963 * 120.00262 * 5 3 2 7 7 C 1.37873 * 119.99865 * 299.99557 * 5 3 2 8 8 N 1.31514 * 120.00518 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99987 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.46948 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47174 * 120.00320 * 9 7 5 12 12 H 1.48497 * 109.47378 * 240.00235 * 9 7 5 13 13 N 1.46506 * 109.47289 * 294.99928 * 3 2 1 14 14 C 1.34775 * 119.99693 * 84.99802 * 13 3 2 15 15 O 1.21615 * 120.00286 * 0.02562 * 14 13 3 16 16 C 1.47206 * 119.99614 * 180.02562 * 14 13 3 17 17 C 1.36636 * 125.15598 * 179.71988 * 16 14 13 18 18 C 1.36767 * 114.75218 * 179.85143 * 17 16 14 19 19 C 1.36695 * 114.73141 * 0.43817 * 18 17 16 20 20 C 1.47012 * 125.16043 * 179.78160 * 19 18 17 21 21 O 1.21541 * 120.00402 * 359.97438 * 20 19 18 22 22 O 1.34830 * 119.99665 * 179.97438 * 20 19 18 23 23 S 1.75836 * 125.15742 * 0.02890 * 16 14 13 24 24 H 1.09002 * 109.47620 * 299.99731 * 1 2 3 25 25 H 1.09000 * 109.47757 * 60.00487 * 1 2 3 26 26 H 1.09004 * 109.46683 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47165 * 240.00129 * 2 1 3 28 28 H 1.09000 * 109.47232 * 119.99524 * 2 1 3 29 29 H 0.96992 * 120.00316 * 179.97438 * 8 7 5 30 30 H 0.97000 * 120.00117 * 265.00154 * 13 3 2 31 31 H 1.08001 * 122.62059 * 0.02562 * 17 16 14 32 32 H 1.07992 * 122.63377 * 180.19755 * 18 17 16 33 33 H 0.96702 * 116.99277 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6052 1.9816 0.8418 5 6 3.5418 1.4444 0.1238 6 1 4.1471 1.8891 -0.6523 7 6 4.1432 0.8786 1.2280 8 7 3.4062 0.3368 2.1729 9 14 6.0049 0.8803 1.3811 10 1 6.5986 1.5455 0.1936 11 1 6.3999 1.6160 2.6091 12 1 6.4962 -0.5187 1.4627 13 7 1.6523 2.0975 -1.2519 14 6 0.4350 2.6643 -1.3670 15 8 -0.3416 2.6324 -0.4316 16 6 0.0453 3.3219 -2.6250 17 6 -1.1593 3.9230 -2.8583 18 6 -1.2939 4.4716 -4.1038 19 6 -0.2047 4.3209 -4.9158 20 6 -0.1031 4.8154 -6.2966 21 8 -1.0360 5.4107 -6.7991 22 8 1.0250 4.6085 -7.0054 23 16 1.0567 3.4463 -4.0580 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.8293 -0.0615 2.9495 30 1 2.2718 2.1232 -1.9978 31 1 -1.9428 3.9643 -2.1160 32 1 -2.1917 4.9803 -4.4223 33 1 1.0449 4.9524 -7.9090 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604980277.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:13 Heat of formation + Delta-G solvation = -99.672855 kcal Electronic energy + Delta-G solvation = -19384.796498 eV Core-core repulsion = 16116.175169 eV Total energy + Delta-G solvation = -3268.621329 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.35646 -39.34157 -37.40692 -36.26002 -35.13495 -32.56231 -31.27811 -30.08758 -27.33917 -25.91752 -23.27831 -22.64476 -21.37577 -19.64903 -19.11585 -19.00382 -18.05063 -16.64989 -16.20682 -15.95671 -15.65569 -15.29504 -14.77436 -14.46984 -13.98160 -13.42965 -13.22653 -12.97687 -12.74277 -12.45253 -12.08738 -11.86156 -11.60557 -11.32896 -11.26957 -11.01933 -10.94979 -10.90968 -10.38965 -10.27881 -9.73201 -9.41070 -9.13752 -9.03794 -8.79510 -8.58721 -8.01215 -6.19475 -4.29537 -0.08755 1.17449 1.61396 1.84716 2.65694 2.66696 3.20053 3.28298 3.30600 3.60110 3.77765 4.30208 4.88822 5.02032 5.11925 5.14755 5.24866 5.76289 5.93635 6.09608 6.11036 6.32190 6.38079 6.57246 6.95548 7.09444 7.19726 7.29224 7.51390 7.53357 7.61825 7.79243 8.08015 8.43999 8.64071 8.87600 9.37676 10.85926 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.024503 B = 0.004241 C = 0.003768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.443595 B = 6600.156654 C = 7430.065113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.129 4.129 3 C 0.270 3.730 4 H 0.054 0.946 5 C -0.537 4.537 6 H 0.063 0.937 7 C 0.068 3.932 8 N -0.881 5.881 9 Si 0.902 3.098 10 H -0.272 1.272 11 H -0.282 1.282 12 H -0.282 1.282 13 N -0.696 5.696 14 C 0.567 3.433 15 O -0.524 6.524 16 C -0.198 4.198 17 C -0.098 4.098 18 C -0.047 4.047 19 C -0.256 4.256 20 C 0.561 3.439 21 O -0.507 6.507 22 O -0.511 6.511 23 S 0.238 5.762 24 H 0.051 0.949 25 H 0.037 0.963 26 H 0.025 0.975 27 H 0.033 0.967 28 H 0.102 0.898 29 H 0.265 0.735 30 H 0.387 0.613 31 H 0.162 0.838 32 H 0.158 0.842 33 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.471 5.755 -14.439 16.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.167 4.167 3 C 0.169 3.831 4 H 0.072 0.928 5 C -0.576 4.576 6 H 0.081 0.919 7 C -0.135 4.135 8 N -0.518 5.518 9 Si 0.729 3.271 10 H -0.197 1.197 11 H -0.208 1.208 12 H -0.208 1.208 13 N -0.344 5.344 14 C 0.349 3.651 15 O -0.403 6.403 16 C -0.321 4.321 17 C -0.130 4.130 18 C -0.081 4.081 19 C -0.376 4.376 20 C 0.404 3.596 21 O -0.397 6.397 22 O -0.323 6.323 23 S 0.508 5.492 24 H 0.070 0.930 25 H 0.056 0.944 26 H 0.044 0.956 27 H 0.052 0.948 28 H 0.120 0.880 29 H 0.075 0.925 30 H 0.219 0.781 31 H 0.180 0.820 32 H 0.175 0.825 33 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges -3.706 5.109 -13.658 15.046 hybrid contribution -0.138 0.681 -0.549 0.885 sum -3.845 5.789 -14.207 15.816 Atomic orbital electron populations 1.21860 0.98281 0.98328 1.01205 1.21956 0.92676 0.99515 1.02589 1.18928 0.94604 0.89323 0.80285 0.92823 1.21233 0.90419 1.39385 1.06520 0.91913 1.24871 0.98748 0.94630 0.95271 1.69891 1.35166 1.37386 1.09337 0.86383 0.84638 0.77845 0.78199 1.19673 1.20820 1.20802 1.46523 1.13720 1.55202 1.18953 1.17061 0.83441 0.79450 0.85117 1.90806 1.51420 1.59649 1.38470 1.25762 0.99626 1.06944 0.99741 1.20526 0.97350 0.97977 0.97145 1.20556 0.98021 0.97653 0.91889 1.23610 1.02060 1.15076 0.96846 1.19423 0.79678 0.75703 0.84747 1.90924 1.38932 1.39352 1.70513 1.84595 1.39844 1.75716 1.32128 1.84362 1.14273 1.48602 1.02001 0.93008 0.94397 0.95583 0.94828 0.87974 0.92489 0.78070 0.82036 0.82459 0.72266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.00 8.51 37.16 0.32 -2.68 16 2 C -0.13 -3.01 5.45 -26.73 -0.15 -3.16 16 3 C 0.27 6.53 2.24 -69.08 -0.15 6.37 16 4 H 0.05 1.50 7.58 -51.93 -0.39 1.10 16 5 C -0.54 -13.69 8.73 -34.44 -0.30 -13.99 16 6 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -23.89 11.29 55.43 0.63 -23.26 16 9 Si 0.90 20.02 29.54 -169.99 -5.02 15.00 16 10 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 11 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 12 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 13 N -0.70 -13.98 5.02 -56.08 -0.28 -14.26 16 14 C 0.57 10.90 6.37 -12.62 -0.08 10.82 16 15 O -0.52 -11.66 13.95 5.26 0.07 -11.58 16 16 C -0.20 -2.99 6.46 -36.52 -0.24 -3.22 16 17 C -0.10 -1.29 9.88 -40.69 -0.40 -1.69 16 18 C -0.05 -0.54 9.88 -40.67 -0.40 -0.94 16 19 C -0.26 -3.07 6.46 -36.59 -0.24 -3.31 16 20 C 0.56 6.37 8.32 34.29 0.29 6.66 16 21 O -0.51 -6.83 17.60 -19.30 -0.34 -7.17 16 22 O -0.51 -4.29 13.28 -40.85 -0.54 -4.84 16 23 S 0.24 2.94 22.17 -107.50 -2.38 0.55 16 24 H 0.05 1.18 7.84 -51.93 -0.41 0.77 16 25 H 0.04 0.79 5.65 -51.93 -0.29 0.50 16 26 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.10 2.65 5.95 -51.93 -0.31 2.34 16 29 H 0.27 6.82 8.31 -40.82 -0.34 6.49 16 30 H 0.39 6.84 7.64 -40.82 -0.31 6.53 16 31 H 0.16 1.99 8.04 -52.49 -0.42 1.57 16 32 H 0.16 1.52 8.04 -52.49 -0.42 1.10 16 33 H 0.42 1.42 9.11 45.56 0.42 1.84 16 LS Contribution 303.95 15.07 4.58 4.58 Total: -1.00 -30.66 303.95 -7.27 -37.93 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: -2.53 Total: 6.52 kcal Atomic # 6 Polarization: -2.02 SS G_CDS: -1.45 Total: -3.47 kcal Atomic # 7 Polarization: -37.87 SS G_CDS: 0.34 Total: -37.53 kcal Atomic # 8 Polarization: -22.78 SS G_CDS: -0.81 Total: -23.59 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.02 Total: 15.00 kcal Atomic # 16 Polarization: 2.94 SS G_CDS: -2.38 Total: 0.55 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -30.66 -7.27 -37.93 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604980277.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.740 kcal (2) G-P(sol) polarization free energy of solvation -30.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds