Wall clock time and date at job start Tue Mar 31 2020 06:33:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.46729 * 2 1 4 4 H 1.09004 * 109.47261 * 55.00056 * 3 2 1 5 5 C 1.50699 * 109.47078 * 175.00091 * 3 2 1 6 6 H 1.08003 * 119.99963 * 120.00262 * 5 3 2 7 7 C 1.37873 * 119.99865 * 299.99557 * 5 3 2 8 8 N 1.31514 * 120.00518 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99987 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.46948 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47174 * 120.00320 * 9 7 5 12 12 H 1.48497 * 109.47378 * 240.00235 * 9 7 5 13 13 N 1.46506 * 109.47289 * 294.99928 * 3 2 1 14 14 C 1.34775 * 119.99693 * 84.99802 * 13 3 2 15 15 O 1.21615 * 120.00286 * 0.02562 * 14 13 3 16 16 C 1.47206 * 119.99614 * 180.02562 * 14 13 3 17 17 C 1.36636 * 125.15598 * 179.71988 * 16 14 13 18 18 C 1.36767 * 114.75218 * 179.85143 * 17 16 14 19 19 C 1.36695 * 114.73141 * 0.43817 * 18 17 16 20 20 C 1.47012 * 125.16043 * 179.78160 * 19 18 17 21 21 O 1.21541 * 120.00402 * 359.97438 * 20 19 18 22 22 O 1.34830 * 119.99665 * 179.97438 * 20 19 18 23 23 S 1.75836 * 125.15742 * 0.02890 * 16 14 13 24 24 H 1.09002 * 109.47620 * 299.99731 * 1 2 3 25 25 H 1.09000 * 109.47757 * 60.00487 * 1 2 3 26 26 H 1.09004 * 109.46683 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47165 * 240.00129 * 2 1 3 28 28 H 1.09000 * 109.47232 * 119.99524 * 2 1 3 29 29 H 0.96992 * 120.00316 * 179.97438 * 8 7 5 30 30 H 0.97000 * 120.00117 * 265.00154 * 13 3 2 31 31 H 1.08001 * 122.62059 * 0.02562 * 17 16 14 32 32 H 1.07992 * 122.63377 * 180.19755 * 18 17 16 33 33 H 0.96702 * 116.99277 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6052 1.9816 0.8418 5 6 3.5418 1.4444 0.1238 6 1 4.1471 1.8891 -0.6523 7 6 4.1432 0.8786 1.2280 8 7 3.4062 0.3368 2.1729 9 14 6.0049 0.8803 1.3811 10 1 6.5986 1.5455 0.1936 11 1 6.3999 1.6160 2.6091 12 1 6.4962 -0.5187 1.4627 13 7 1.6523 2.0975 -1.2519 14 6 0.4350 2.6643 -1.3670 15 8 -0.3416 2.6324 -0.4316 16 6 0.0453 3.3219 -2.6250 17 6 -1.1593 3.9230 -2.8583 18 6 -1.2939 4.4716 -4.1038 19 6 -0.2047 4.3209 -4.9158 20 6 -0.1031 4.8154 -6.2966 21 8 -1.0360 5.4107 -6.7991 22 8 1.0250 4.6085 -7.0054 23 16 1.0567 3.4463 -4.0580 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.8293 -0.0615 2.9495 30 1 2.2718 2.1232 -1.9978 31 1 -1.9428 3.9643 -2.1160 32 1 -2.1917 4.9803 -4.4223 33 1 1.0449 4.9524 -7.9090 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604980277.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:12 Heat of formation + Delta-G solvation = -120.795662 kcal Electronic energy + Delta-G solvation = -19385.712452 eV Core-core repulsion = 16116.175169 eV Total energy + Delta-G solvation = -3269.537283 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.23286 -40.85919 -38.48626 -37.13570 -36.86594 -34.39496 -33.01973 -31.27607 -29.09912 -27.14896 -25.04162 -23.68314 -22.79274 -21.41940 -20.43209 -19.94906 -19.13305 -18.16720 -17.55317 -17.06770 -16.83620 -16.76280 -16.37069 -16.05226 -15.29656 -14.68633 -14.57098 -14.31985 -14.15965 -13.71089 -13.43172 -13.40684 -13.18095 -12.88301 -12.70918 -12.67850 -12.25995 -12.16325 -12.07693 -11.89394 -11.60196 -11.08271 -11.00614 -10.55059 -10.15916 -9.77926 -9.70552 -8.16800 -6.34244 -1.13171 0.15322 0.59035 0.83875 1.45346 1.47209 1.58358 1.70552 1.88876 2.17270 2.25780 2.49363 3.13368 3.79230 3.99058 4.13373 4.23956 4.49107 4.56751 4.73568 4.83185 4.91473 5.06211 5.12152 5.25866 5.41090 5.42497 5.46416 5.58103 5.75943 5.85989 6.14278 6.70596 6.79083 6.84011 7.24289 7.40996 8.88783 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.024503 B = 0.004241 C = 0.003768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.443595 B = 6600.156654 C = 7430.065113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.122 4.122 3 C 0.277 3.723 4 H 0.007 0.993 5 C -0.551 4.551 6 H 0.072 0.928 7 C 0.020 3.980 8 N -0.912 5.912 9 Si 0.969 3.031 10 H -0.261 1.261 11 H -0.284 1.284 12 H -0.279 1.279 13 N -0.697 5.697 14 C 0.569 3.431 15 O -0.563 6.563 16 C -0.238 4.238 17 C -0.080 4.080 18 C -0.046 4.046 19 C -0.252 4.252 20 C 0.569 3.431 21 O -0.528 6.528 22 O -0.503 6.503 23 S 0.275 5.725 24 H 0.029 0.971 25 H 0.042 0.958 26 H 0.047 0.953 27 H 0.042 0.958 28 H 0.076 0.924 29 H 0.266 0.734 30 H 0.399 0.601 31 H 0.165 0.835 32 H 0.180 0.820 33 H 0.441 0.559 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.811 6.315 -16.873 18.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.161 4.161 3 C 0.175 3.825 4 H 0.025 0.975 5 C -0.589 4.589 6 H 0.090 0.910 7 C -0.181 4.181 8 N -0.551 5.551 9 Si 0.794 3.206 10 H -0.184 1.184 11 H -0.210 1.210 12 H -0.204 1.204 13 N -0.346 5.346 14 C 0.354 3.646 15 O -0.445 6.445 16 C -0.360 4.360 17 C -0.113 4.113 18 C -0.080 4.080 19 C -0.371 4.371 20 C 0.412 3.588 21 O -0.420 6.420 22 O -0.318 6.318 23 S 0.545 5.455 24 H 0.048 0.952 25 H 0.061 0.939 26 H 0.066 0.934 27 H 0.061 0.939 28 H 0.094 0.906 29 H 0.075 0.925 30 H 0.234 0.766 31 H 0.183 0.817 32 H 0.197 0.803 33 H 0.304 0.696 Dipole moment (debyes) X Y Z Total from point charges -3.015 5.678 -16.158 17.390 hybrid contribution -0.371 0.572 0.093 0.688 sum -3.386 6.250 -16.065 17.568 Atomic orbital electron populations 1.21706 0.96897 0.99415 1.00333 1.21809 0.93845 0.98862 1.01623 1.18510 0.93998 0.89368 0.80655 0.97537 1.21572 0.91181 1.39241 1.06873 0.91013 1.25716 1.03205 0.94246 0.94938 1.70035 1.37008 1.38148 1.09860 0.85343 0.79201 0.77850 0.78229 1.18447 1.21045 1.20435 1.46247 1.14671 1.55577 1.18060 1.17476 0.82415 0.78550 0.86142 1.90778 1.52287 1.60979 1.40430 1.25258 1.01611 1.09647 0.99484 1.20674 0.96527 0.96363 0.97736 1.20681 0.98818 0.97537 0.90978 1.23905 1.01926 1.13929 0.97379 1.19241 0.79943 0.75126 0.84461 1.90930 1.39873 1.40326 1.70891 1.84549 1.38190 1.75333 1.33757 1.84184 1.13259 1.47999 1.00029 0.95195 0.93907 0.93373 0.93897 0.90600 0.92502 0.76626 0.81733 0.80317 0.69552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.52 8.51 71.98 0.61 -4.91 16 2 C -0.12 -5.86 5.45 30.59 0.17 -5.70 16 3 C 0.28 13.83 2.24 44.24 0.10 13.93 16 4 H 0.01 0.40 7.58 -2.38 -0.02 0.38 16 5 C -0.55 -28.31 8.73 25.60 0.22 -28.09 16 6 H 0.07 3.46 7.74 -2.91 -0.02 3.44 16 7 C 0.02 1.02 5.29 84.65 0.45 1.47 16 8 N -0.91 -50.76 11.29 21.45 0.24 -50.52 16 9 Si 0.97 40.96 29.54 68.60 2.03 42.98 16 10 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 11 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 12 H -0.28 -11.56 7.11 99.48 0.71 -10.85 16 13 N -0.70 -28.28 5.02 -449.59 -2.26 -30.53 16 14 C 0.57 22.15 6.37 86.60 0.55 22.70 16 15 O -0.56 -25.87 13.95 -4.08 -0.06 -25.93 16 16 C -0.24 -6.97 6.46 24.25 0.16 -6.81 16 17 C -0.08 -1.98 9.88 21.55 0.21 -1.77 16 18 C -0.05 -0.95 9.88 21.56 0.21 -0.74 16 19 C -0.25 -5.34 6.46 24.21 0.16 -5.18 16 20 C 0.57 11.18 8.32 70.12 0.58 11.77 16 21 O -0.53 -12.77 17.60 19.70 0.35 -12.42 16 22 O -0.50 -6.72 13.28 -57.42 -0.76 -7.48 16 23 S 0.27 6.19 22.17 -56.49 -1.25 4.94 16 24 H 0.03 1.40 7.84 -2.39 -0.02 1.38 16 25 H 0.04 1.80 5.65 -2.39 -0.01 1.79 16 26 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 27 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 28 H 0.08 4.06 5.95 -2.39 -0.01 4.05 16 29 H 0.27 13.99 8.31 -92.71 -0.77 13.22 16 30 H 0.40 13.94 7.64 -92.71 -0.71 13.23 16 31 H 0.17 3.92 8.04 -2.91 -0.02 3.89 16 32 H 0.18 2.92 8.04 -2.91 -0.02 2.90 16 33 H 0.44 1.40 9.11 -74.06 -0.67 0.73 16 Total: -1.00 -66.97 303.95 1.51 -65.47 By element: Atomic # 1 Polarization: 17.03 SS G_CDS: -0.21 Total: 16.82 kcal Atomic # 6 Polarization: -6.75 SS G_CDS: 3.42 Total: -3.33 kcal Atomic # 7 Polarization: -79.04 SS G_CDS: -2.01 Total: -81.05 kcal Atomic # 8 Polarization: -45.36 SS G_CDS: -0.47 Total: -45.83 kcal Atomic # 14 Polarization: 40.96 SS G_CDS: 2.03 Total: 42.98 kcal Atomic # 16 Polarization: 6.19 SS G_CDS: -1.25 Total: 4.94 kcal Total: -66.97 1.51 -65.47 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604980277.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.328 kcal (2) G-P(sol) polarization free energy of solvation -66.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds