Wall clock time and date at job start Tue Mar 31 2020 06:33:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.46952 * 2 1 4 4 H 1.09005 * 109.46884 * 304.13220 * 3 2 1 5 5 C 1.50701 * 109.47179 * 184.13275 * 3 2 1 6 6 H 1.07995 * 120.00212 * 244.74978 * 5 3 2 7 7 C 1.37876 * 119.99756 * 64.74150 * 5 3 2 8 8 N 1.31519 * 120.00356 * 5.54108 * 7 5 3 9 9 Si 1.86797 * 120.00049 * 185.53846 * 7 5 3 10 10 H 1.48496 * 109.47375 * 95.00149 * 9 7 5 11 11 H 1.48500 * 109.47423 * 215.00096 * 9 7 5 12 12 H 1.48500 * 109.47170 * 334.99924 * 9 7 5 13 13 N 1.46501 * 109.47243 * 64.13341 * 3 2 1 14 14 C 1.34780 * 119.99926 * 274.99913 * 13 3 2 15 15 O 1.21570 * 119.99762 * 359.97438 * 14 13 3 16 16 C 1.47621 * 119.99914 * 180.02562 * 14 13 3 17 17 C 1.38736 * 123.63226 * 6.03249 * 16 14 13 18 18 C 1.33383 * 115.06039 * 180.29945 * 17 16 14 19 19 S 1.70522 * 111.40293 * 359.72815 * 18 17 16 20 20 C 1.38142 * 123.63012 * 185.82310 * 16 14 13 21 21 C 1.46798 * 125.49461 * 359.97438 * 20 16 14 22 22 O 1.21569 * 120.00207 * 353.16342 * 21 20 16 23 23 O 1.34858 * 119.99712 * 173.43071 * 21 20 16 24 24 H 1.08995 * 109.47124 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47139 * 300.00055 * 1 2 3 26 26 H 1.09001 * 109.47113 * 59.99645 * 1 2 3 27 27 H 1.08990 * 109.47091 * 239.99955 * 2 1 3 28 28 H 1.08999 * 109.47024 * 119.99399 * 2 1 3 29 29 H 0.96996 * 120.00476 * 179.97438 * 8 7 5 30 30 H 0.96997 * 120.00223 * 94.99954 * 13 3 2 31 31 H 1.07999 * 122.47070 * 0.02761 * 17 16 14 32 32 H 1.07998 * 124.29582 * 179.76707 * 18 17 16 33 33 H 0.96701 * 116.99913 * 179.71950 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6174 1.9773 -0.8507 5 6 3.5435 1.4438 -0.1024 6 1 4.1401 1.8228 0.7142 7 6 4.1575 0.9610 -1.2386 8 7 3.4327 0.6009 -2.2753 9 14 6.0188 0.8183 -1.3055 10 1 6.4234 -0.5602 -0.9297 11 1 6.4888 1.1139 -2.6828 12 1 6.6240 1.7877 -0.3573 13 7 1.6346 2.1038 1.2428 14 6 0.4158 2.6713 1.3377 15 8 -0.3470 2.6347 0.3918 16 6 0.0076 3.3381 2.5899 17 6 0.8568 3.5311 3.6698 18 6 0.3075 4.1479 4.7173 19 16 -1.3251 4.5416 4.4217 20 6 -1.2600 3.8408 2.8108 21 6 -2.3745 3.7924 1.8566 22 8 -2.1882 3.3910 0.7243 23 8 -3.6038 4.1982 2.2345 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5137 0.8900 29 1 3.8646 0.2616 -3.0747 30 1 2.2434 2.1333 1.9974 31 1 1.8854 3.2022 3.6646 32 1 0.8306 4.3702 5.6356 33 1 -4.3049 4.1517 1.5701 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604980730.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:16 Heat of formation + Delta-G solvation = -83.969256 kcal Electronic energy + Delta-G solvation = -20214.164926 eV Core-core repulsion = 16946.224556 eV Total energy + Delta-G solvation = -3267.940370 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.10522 -39.01609 -37.03459 -35.74811 -34.84596 -32.27794 -30.94257 -30.13367 -27.32087 -25.67723 -23.07034 -22.38375 -21.52064 -19.59065 -18.93747 -18.53498 -17.48839 -16.61246 -15.87761 -15.52335 -15.27605 -15.04045 -14.56868 -14.38080 -13.87234 -13.29705 -13.02639 -12.71063 -12.63296 -12.39994 -11.91218 -11.41177 -11.32368 -11.27862 -11.11100 -11.00243 -10.76269 -10.58808 -10.26696 -10.11452 -9.59521 -9.03740 -9.03244 -8.67229 -8.58733 -8.44473 -7.72809 -6.10636 -4.17581 0.22301 1.28050 1.72572 2.04255 2.89626 3.06032 3.26090 3.33298 3.35068 4.05956 4.13261 4.41297 4.80318 5.09657 5.22394 5.33860 5.41177 5.89165 6.01192 6.07946 6.42067 6.47841 6.61443 6.69162 7.06428 7.24606 7.40209 7.49395 7.65940 7.76760 7.90326 8.10448 8.15068 8.71992 8.83859 9.22731 9.49262 10.97130 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.025161 B = 0.004921 C = 0.004346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.570101 B = 5688.377955 C = 6441.585821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.120 4.120 3 C 0.271 3.729 4 H 0.056 0.944 5 C -0.535 4.535 6 H 0.061 0.939 7 C 0.068 3.932 8 N -0.881 5.881 9 Si 0.899 3.101 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.702 5.702 14 C 0.534 3.466 15 O -0.483 6.483 16 C -0.056 4.056 17 C -0.128 4.128 18 C -0.240 4.240 19 S 0.247 5.753 20 C -0.208 4.208 21 C 0.521 3.479 22 O -0.420 6.420 23 O -0.528 6.528 24 H 0.022 0.978 25 H 0.039 0.961 26 H 0.053 0.947 27 H 0.084 0.916 28 H 0.033 0.967 29 H 0.264 0.736 30 H 0.385 0.615 31 H 0.154 0.846 32 H 0.174 0.826 33 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.799 6.880 14.915 18.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.159 4.159 3 C 0.170 3.830 4 H 0.074 0.926 5 C -0.573 4.573 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.726 3.274 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.352 5.352 14 C 0.316 3.684 15 O -0.358 6.358 16 C -0.075 4.075 17 C -0.158 4.158 18 C -0.377 4.377 19 S 0.516 5.484 20 C -0.328 4.328 21 C 0.359 3.641 22 O -0.303 6.303 23 O -0.342 6.342 24 H 0.041 0.959 25 H 0.058 0.942 26 H 0.072 0.928 27 H 0.102 0.898 28 H 0.051 0.949 29 H 0.074 0.926 30 H 0.217 0.783 31 H 0.171 0.829 32 H 0.191 0.809 33 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -10.073 7.394 14.830 19.392 hybrid contribution 2.169 -0.864 -0.761 2.456 sum -7.904 6.530 14.069 17.408 Atomic orbital electron populations 1.21837 0.98035 0.98014 1.01565 1.21858 0.92884 0.99837 1.01350 1.18799 0.94053 0.88854 0.81330 0.92634 1.21199 0.90533 1.42986 1.02579 0.92115 1.24887 0.98485 0.95107 0.95093 1.69968 1.35364 1.42505 1.03922 0.86483 0.85092 0.78356 0.77451 1.20605 1.21139 1.19861 1.46402 1.14291 1.55994 1.18524 1.17686 0.83558 0.80641 0.86558 1.91014 1.50257 1.57159 1.37349 1.20085 0.91577 0.98778 0.97058 1.20106 1.01903 1.01885 0.91921 1.25257 1.01007 1.06929 1.04505 1.83044 1.06080 1.53141 1.06145 1.23809 0.96348 1.12818 0.99840 1.19453 0.81398 0.76667 0.86563 1.91299 1.82297 1.38172 1.18515 1.84525 1.19970 1.80664 1.49000 0.95937 0.94234 0.92832 0.89778 0.94854 0.92598 0.78261 0.82896 0.80872 0.72768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.17 8.50 37.16 0.32 -2.86 16 2 C -0.12 -2.95 5.49 -26.73 -0.15 -3.10 16 3 C 0.27 6.91 2.13 -69.08 -0.15 6.76 16 4 H 0.06 1.66 7.56 -51.93 -0.39 1.27 16 5 C -0.53 -14.14 8.68 -34.44 -0.30 -14.44 16 6 H 0.06 1.53 7.73 -52.49 -0.41 1.12 16 7 C 0.07 1.83 5.23 -17.82 -0.09 1.74 16 8 N -0.88 -25.09 11.92 55.43 0.66 -24.43 16 9 Si 0.90 20.66 29.54 -169.99 -5.02 15.63 16 10 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 11 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 12 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 13 N -0.70 -14.86 4.99 -55.95 -0.28 -15.14 16 14 C 0.53 11.26 6.32 -12.43 -0.08 11.18 16 15 O -0.48 -11.93 9.67 -20.31 -0.20 -12.13 16 16 C -0.06 -0.93 5.89 -105.92 -0.62 -1.55 16 17 C -0.13 -1.61 9.62 -41.09 -0.40 -2.00 16 18 C -0.24 -2.35 10.87 29.04 0.32 -2.03 16 19 S 0.25 2.54 22.92 -107.50 -2.46 0.07 16 20 C -0.21 -3.16 6.51 -36.16 -0.24 -3.40 16 21 C 0.52 8.44 8.30 34.19 0.28 8.72 16 22 O -0.42 -8.72 13.37 -27.85 -0.37 -9.09 16 23 O -0.53 -6.11 13.30 -40.93 -0.54 -6.65 16 24 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 25 H 0.04 0.90 5.67 -51.93 -0.29 0.61 16 26 H 0.05 1.34 7.79 -51.93 -0.40 0.93 16 27 H 0.08 2.26 6.59 -51.93 -0.34 1.92 16 28 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 30 H 0.38 6.97 7.04 -40.82 -0.29 6.68 16 31 H 0.15 1.68 6.98 -52.49 -0.37 1.31 16 32 H 0.17 1.12 8.06 -52.49 -0.42 0.69 16 33 H 0.41 2.96 9.11 45.56 0.42 3.37 16 LS Contribution 295.68 15.07 4.46 4.46 Total: -1.00 -33.73 295.68 -7.35 -41.08 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -2.48 Total: 7.17 kcal Atomic # 6 Polarization: 0.13 SS G_CDS: -1.10 Total: -0.97 kcal Atomic # 7 Polarization: -39.95 SS G_CDS: 0.38 Total: -39.57 kcal Atomic # 8 Polarization: -26.76 SS G_CDS: -1.11 Total: -27.87 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.63 kcal Atomic # 16 Polarization: 2.54 SS G_CDS: -2.46 Total: 0.07 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -33.73 -7.35 -41.08 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604980730.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.894 kcal (2) G-P(sol) polarization free energy of solvation -33.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds