Wall clock time and date at job start Tue Mar 31 2020 06:33:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.46952 * 2 1 4 4 H 1.09005 * 109.46884 * 304.13220 * 3 2 1 5 5 C 1.50701 * 109.47179 * 184.13275 * 3 2 1 6 6 H 1.07995 * 120.00212 * 244.74978 * 5 3 2 7 7 C 1.37876 * 119.99756 * 64.74150 * 5 3 2 8 8 N 1.31519 * 120.00356 * 5.54108 * 7 5 3 9 9 Si 1.86797 * 120.00049 * 185.53846 * 7 5 3 10 10 H 1.48496 * 109.47375 * 95.00149 * 9 7 5 11 11 H 1.48500 * 109.47423 * 215.00096 * 9 7 5 12 12 H 1.48500 * 109.47170 * 334.99924 * 9 7 5 13 13 N 1.46501 * 109.47243 * 64.13341 * 3 2 1 14 14 C 1.34780 * 119.99926 * 274.99913 * 13 3 2 15 15 O 1.21570 * 119.99762 * 359.97438 * 14 13 3 16 16 C 1.47621 * 119.99914 * 180.02562 * 14 13 3 17 17 C 1.38736 * 123.63226 * 6.03249 * 16 14 13 18 18 C 1.33383 * 115.06039 * 180.29945 * 17 16 14 19 19 S 1.70522 * 111.40293 * 359.72815 * 18 17 16 20 20 C 1.38142 * 123.63012 * 185.82310 * 16 14 13 21 21 C 1.46798 * 125.49461 * 359.97438 * 20 16 14 22 22 O 1.21569 * 120.00207 * 353.16342 * 21 20 16 23 23 O 1.34858 * 119.99712 * 173.43071 * 21 20 16 24 24 H 1.08995 * 109.47124 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47139 * 300.00055 * 1 2 3 26 26 H 1.09001 * 109.47113 * 59.99645 * 1 2 3 27 27 H 1.08990 * 109.47091 * 239.99955 * 2 1 3 28 28 H 1.08999 * 109.47024 * 119.99399 * 2 1 3 29 29 H 0.96996 * 120.00476 * 179.97438 * 8 7 5 30 30 H 0.96997 * 120.00223 * 94.99954 * 13 3 2 31 31 H 1.07999 * 122.47070 * 0.02761 * 17 16 14 32 32 H 1.07998 * 124.29582 * 179.76707 * 18 17 16 33 33 H 0.96701 * 116.99913 * 179.71950 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6174 1.9773 -0.8507 5 6 3.5435 1.4438 -0.1024 6 1 4.1401 1.8228 0.7142 7 6 4.1575 0.9610 -1.2386 8 7 3.4327 0.6009 -2.2753 9 14 6.0188 0.8183 -1.3055 10 1 6.4234 -0.5602 -0.9297 11 1 6.4888 1.1139 -2.6828 12 1 6.6240 1.7877 -0.3573 13 7 1.6346 2.1038 1.2428 14 6 0.4158 2.6713 1.3377 15 8 -0.3470 2.6347 0.3918 16 6 0.0076 3.3381 2.5899 17 6 0.8568 3.5311 3.6698 18 6 0.3075 4.1479 4.7173 19 16 -1.3251 4.5416 4.4217 20 6 -1.2600 3.8408 2.8108 21 6 -2.3745 3.7924 1.8566 22 8 -2.1882 3.3910 0.7243 23 8 -3.6038 4.1982 2.2345 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5137 0.8900 29 1 3.8646 0.2616 -3.0747 30 1 2.2434 2.1333 1.9974 31 1 1.8854 3.2022 3.6646 32 1 0.8306 4.3702 5.6356 33 1 -4.3049 4.1517 1.5701 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604980730.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:16 Heat of formation + Delta-G solvation = -108.660190 kcal Electronic energy + Delta-G solvation = -20215.235605 eV Core-core repulsion = 16946.224556 eV Total energy + Delta-G solvation = -3269.011049 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.39673 -40.41803 -38.27661 -36.98675 -36.63512 -34.23269 -32.83373 -31.17603 -29.20377 -27.06122 -24.95765 -23.52521 -22.92461 -21.46681 -20.31307 -19.74478 -18.76606 -18.17765 -17.39932 -16.78880 -16.77570 -16.57882 -16.06284 -15.89850 -15.28679 -14.65645 -14.56017 -14.26674 -13.93259 -13.61629 -13.46467 -13.28224 -13.24970 -12.89131 -12.62593 -12.46556 -12.19478 -12.14475 -12.02979 -11.86581 -11.57122 -11.05907 -10.55518 -10.16291 -10.04614 -9.64413 -9.47290 -8.16679 -6.31927 -0.85571 0.32477 0.84154 1.01353 1.45590 1.46175 1.57169 1.64958 2.03175 2.38005 2.57889 2.70157 3.14851 3.85796 4.08653 4.17647 4.45141 4.48349 4.51703 4.70918 4.89769 5.01366 5.05326 5.13340 5.23600 5.42299 5.52933 5.59539 5.68555 5.75741 5.97032 6.10247 6.77162 6.99895 7.07171 7.35783 7.67626 8.91829 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.025161 B = 0.004921 C = 0.004346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.570101 B = 5688.377955 C = 6441.585821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.111 4.111 3 C 0.280 3.720 4 H -0.002 1.002 5 C -0.546 4.546 6 H 0.075 0.925 7 C 0.014 3.986 8 N -0.920 5.920 9 Si 0.972 3.028 10 H -0.272 1.272 11 H -0.289 1.289 12 H -0.260 1.260 13 N -0.699 5.699 14 C 0.526 3.474 15 O -0.528 6.528 16 C -0.081 4.081 17 C -0.145 4.145 18 C -0.216 4.216 19 S 0.350 5.650 20 C -0.253 4.253 21 C 0.523 3.477 22 O -0.482 6.482 23 O -0.509 6.509 24 H 0.046 0.954 25 H 0.039 0.961 26 H 0.022 0.978 27 H 0.056 0.944 28 H 0.048 0.952 29 H 0.264 0.736 30 H 0.401 0.599 31 H 0.166 0.834 32 H 0.219 0.781 33 H 0.432 0.568 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.081 7.886 18.901 22.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.151 4.151 3 C 0.176 3.824 4 H 0.016 0.984 5 C -0.584 4.584 6 H 0.093 0.907 7 C -0.186 4.186 8 N -0.558 5.558 9 Si 0.796 3.204 10 H -0.198 1.198 11 H -0.215 1.215 12 H -0.184 1.184 13 N -0.350 5.350 14 C 0.311 3.689 15 O -0.406 6.406 16 C -0.101 4.101 17 C -0.174 4.174 18 C -0.354 4.354 19 S 0.619 5.381 20 C -0.373 4.373 21 C 0.364 3.636 22 O -0.369 6.369 23 O -0.325 6.325 24 H 0.065 0.935 25 H 0.058 0.942 26 H 0.041 0.959 27 H 0.075 0.925 28 H 0.067 0.933 29 H 0.073 0.927 30 H 0.236 0.764 31 H 0.183 0.817 32 H 0.236 0.764 33 H 0.294 0.706 Dipole moment (debyes) X Y Z Total from point charges -9.379 8.429 18.889 22.712 hybrid contribution 1.779 -1.049 -1.859 2.779 sum -7.599 7.380 17.031 20.056 Atomic orbital electron populations 1.21644 0.97096 0.98974 1.00073 1.21699 0.93575 0.99198 1.00589 1.18353 0.93699 0.88839 0.81477 0.98437 1.21559 0.91053 1.42718 1.03060 0.90720 1.25820 1.03493 0.94643 0.94609 1.70135 1.37510 1.43523 1.04602 0.85341 0.78921 0.78789 0.77328 1.19758 1.21500 1.18421 1.46127 1.15167 1.56122 1.17617 1.18415 0.82630 0.79927 0.87948 1.91006 1.51338 1.58626 1.39582 1.19772 0.93346 1.00770 0.96197 1.20114 1.02242 1.03460 0.91580 1.25817 1.01063 1.03666 1.04834 1.82724 1.05324 1.49298 1.00759 1.24064 0.95669 1.14519 1.03039 1.19800 0.82544 0.75247 0.86023 1.91281 1.83402 1.41132 1.21080 1.84472 1.19134 1.79553 1.49333 0.93485 0.94175 0.95897 0.92498 0.93294 0.92680 0.76368 0.81706 0.76378 0.70601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.84 8.50 71.98 0.61 -5.23 16 2 C -0.11 -5.69 5.49 30.60 0.17 -5.53 16 3 C 0.28 14.95 2.13 44.25 0.09 15.04 16 4 H 0.00 -0.15 7.56 -2.38 -0.02 -0.17 16 5 C -0.55 -29.38 8.68 25.60 0.22 -29.16 16 6 H 0.07 3.71 7.73 -2.91 -0.02 3.69 16 7 C 0.01 0.79 5.23 84.65 0.44 1.23 16 8 N -0.92 -54.50 11.92 21.45 0.26 -54.24 16 9 Si 0.97 42.54 29.54 68.60 2.03 44.57 16 10 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 11 H -0.29 -12.72 7.11 99.48 0.71 -12.01 16 12 H -0.26 -10.73 7.11 99.48 0.71 -10.03 16 13 N -0.70 -30.53 4.99 -449.18 -2.24 -32.77 16 14 C 0.53 23.19 6.32 86.72 0.55 23.73 16 15 O -0.53 -28.04 9.67 20.56 0.20 -27.84 16 16 C -0.08 -2.64 5.89 -20.70 -0.12 -2.76 16 17 C -0.15 -3.27 9.62 21.29 0.20 -3.06 16 18 C -0.22 -3.14 10.87 66.72 0.73 -2.41 16 19 S 0.35 5.65 22.92 -56.49 -1.29 4.36 16 20 C -0.25 -7.42 6.51 24.49 0.16 -7.27 16 21 C 0.52 17.21 8.30 70.06 0.58 17.79 16 22 O -0.48 -21.31 13.37 27.77 0.37 -20.94 16 23 O -0.51 -11.23 13.30 -57.71 -0.77 -12.00 16 24 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 25 H 0.04 1.91 5.67 -2.38 -0.01 1.90 16 26 H 0.02 1.20 7.79 -2.39 -0.02 1.18 16 27 H 0.06 3.21 6.59 -2.39 -0.02 3.19 16 28 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 29 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 30 H 0.40 14.49 7.04 -92.71 -0.65 13.84 16 31 H 0.17 3.18 6.98 -2.91 -0.02 3.16 16 32 H 0.22 1.23 8.06 -2.91 -0.02 1.20 16 33 H 0.43 5.85 9.11 -74.06 -0.67 5.18 16 Total: -1.00 -79.89 295.68 2.04 -77.85 By element: Atomic # 1 Polarization: 18.76 SS G_CDS: -0.15 Total: 18.62 kcal Atomic # 6 Polarization: -1.24 SS G_CDS: 3.64 Total: 2.39 kcal Atomic # 7 Polarization: -85.03 SS G_CDS: -1.98 Total: -87.01 kcal Atomic # 8 Polarization: -60.58 SS G_CDS: -0.20 Total: -60.78 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.57 kcal Atomic # 16 Polarization: 5.65 SS G_CDS: -1.29 Total: 4.36 kcal Total: -79.89 2.04 -77.85 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604980730.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.809 kcal (2) G-P(sol) polarization free energy of solvation -79.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds