Wall clock time and date at job start Tue Mar 31 2020 06:33:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47298 * 2 1 4 4 H 1.09003 * 109.47037 * 55.00590 * 3 2 1 5 5 C 1.50705 * 109.46959 * 174.99995 * 3 2 1 6 6 H 1.07993 * 119.99523 * 120.00412 * 5 3 2 7 7 C 1.37872 * 120.00170 * 300.00540 * 5 3 2 8 8 N 1.31516 * 120.00280 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00031 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47162 * 59.99621 * 9 7 5 11 11 H 1.48498 * 109.47537 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47015 * 300.00086 * 9 7 5 13 13 N 1.46490 * 109.47657 * 295.00630 * 3 2 1 14 14 C 1.34777 * 120.00285 * 84.99408 * 13 3 2 15 15 O 1.21579 * 119.99976 * 0.02562 * 14 13 3 16 16 C 1.47626 * 120.00149 * 180.02562 * 14 13 3 17 17 C 1.38739 * 123.62789 * 37.85401 * 16 14 13 18 18 C 1.33381 * 115.05653 * 179.76227 * 17 16 14 19 19 S 1.70522 * 111.40334 * 0.49731 * 18 17 16 20 20 C 1.38135 * 123.63215 * 218.15040 * 16 14 13 21 21 C 1.46808 * 125.49678 * 0.02562 * 20 16 14 22 22 O 1.21571 * 120.00037 * 6.13574 * 21 20 16 23 23 O 1.34858 * 119.99727 * 186.13053 * 21 20 16 24 24 H 1.08995 * 109.47198 * 59.99164 * 1 2 3 25 25 H 1.08992 * 109.47161 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46617 * 299.99892 * 1 2 3 27 27 H 1.09004 * 109.46617 * 240.00108 * 2 1 3 28 28 H 1.08995 * 109.47198 * 120.00836 * 2 1 3 29 29 H 0.96997 * 120.00372 * 179.97438 * 8 7 5 30 30 H 0.97002 * 119.99764 * 264.99903 * 13 3 2 31 31 H 1.07998 * 122.46737 * 0.02562 * 17 16 14 32 32 H 1.08001 * 124.29799 * 180.18480 * 18 17 16 33 33 H 0.96707 * 116.99317 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8419 5 6 3.5420 1.4442 0.1238 6 1 4.1472 1.8888 -0.6523 7 6 4.1434 0.8782 1.2279 8 7 3.4063 0.3372 2.1732 9 14 6.0050 0.8809 1.3817 10 1 6.4996 2.2812 1.3821 11 1 6.3979 0.2174 2.6507 12 1 6.5975 0.1471 0.2347 13 7 1.6525 2.0976 -1.2516 14 6 0.4352 2.6645 -1.3667 15 8 -0.3411 2.6326 -0.4316 16 6 0.0444 3.3242 -2.6282 17 6 0.3899 2.8465 -3.8842 18 6 -0.0579 3.5745 -4.9082 19 16 -0.9409 4.9300 -4.3691 20 6 -0.6996 4.4867 -2.6852 21 6 -1.2065 5.2320 -1.5264 22 8 -0.8870 4.8983 -0.4019 23 8 -2.0265 6.2868 -1.7094 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8901 27 1 1.8933 -0.5139 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 3.8294 -0.0614 2.9498 30 1 2.2720 2.1233 -1.9976 31 1 0.9745 1.9491 -4.0224 32 1 0.1207 3.3383 -5.9468 33 1 -2.3348 6.7459 -0.9160 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604980731.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:20 Heat of formation + Delta-G solvation = -92.405002 kcal Electronic energy + Delta-G solvation = -20159.738065 eV Core-core repulsion = 16891.431894 eV Total energy + Delta-G solvation = -3268.306171 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.15313 -39.06608 -37.07699 -35.83260 -34.89207 -32.29376 -30.90371 -30.16701 -27.32948 -25.72665 -23.08062 -22.46099 -21.50686 -19.54643 -18.88835 -18.73800 -17.54629 -16.60536 -15.85915 -15.61728 -15.31783 -15.11167 -14.63417 -14.36026 -13.84421 -13.21652 -13.13489 -12.82336 -12.68705 -12.44660 -11.85945 -11.46040 -11.40353 -11.25458 -11.14610 -10.96541 -10.79304 -10.47525 -10.25810 -10.13276 -9.58216 -9.06434 -9.04649 -8.95885 -8.68454 -8.45266 -7.73708 -6.08130 -4.17404 0.20109 1.26286 1.70259 2.05431 2.85689 3.01875 3.28022 3.33329 3.34455 3.78617 4.13844 4.41214 4.82885 5.09970 5.23030 5.33800 5.39436 5.83590 5.99221 6.07493 6.43424 6.50221 6.54149 6.70612 7.08129 7.25308 7.41411 7.50243 7.66159 7.77725 7.95254 8.01031 8.22237 8.70369 8.82247 9.18206 9.49609 10.97293 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.022584 B = 0.004823 C = 0.004665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.503011 B = 5803.979914 C = 6000.198056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.126 4.126 3 C 0.272 3.728 4 H 0.051 0.949 5 C -0.534 4.534 6 H 0.060 0.940 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.699 5.699 14 C 0.550 3.450 15 O -0.503 6.503 16 C -0.049 4.049 17 C -0.129 4.129 18 C -0.237 4.237 19 S 0.251 5.749 20 C -0.218 4.218 21 C 0.536 3.464 22 O -0.448 6.448 23 O -0.522 6.522 24 H 0.037 0.963 25 H 0.022 0.978 26 H 0.050 0.950 27 H 0.031 0.969 28 H 0.099 0.901 29 H 0.265 0.735 30 H 0.387 0.613 31 H 0.154 0.846 32 H 0.175 0.825 33 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.778 8.169 -14.785 18.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.165 4.165 3 C 0.170 3.830 4 H 0.069 0.931 5 C -0.572 4.572 6 H 0.078 0.922 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.348 5.348 14 C 0.331 3.669 15 O -0.379 6.379 16 C -0.069 4.069 17 C -0.159 4.159 18 C -0.374 4.374 19 S 0.520 5.480 20 C -0.338 4.338 21 C 0.376 3.624 22 O -0.333 6.333 23 O -0.336 6.336 24 H 0.056 0.944 25 H 0.041 0.959 26 H 0.069 0.931 27 H 0.050 0.950 28 H 0.118 0.882 29 H 0.075 0.925 30 H 0.220 0.780 31 H 0.172 0.828 32 H 0.192 0.808 33 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges -8.825 8.920 -14.675 19.308 hybrid contribution 1.888 -1.008 0.782 2.278 sum -6.938 7.912 -13.893 17.428 Atomic orbital electron populations 1.21848 0.98376 0.98009 1.01292 1.21937 0.92580 0.99744 1.02277 1.18812 0.94193 0.89086 0.80872 0.93069 1.21184 0.90671 1.39018 1.06329 0.92164 1.24873 0.98536 0.94853 0.95360 1.69886 1.35176 1.37563 1.09317 0.86520 0.84944 0.78282 0.77410 1.20228 1.21143 1.20188 1.46384 1.14019 1.55716 1.18696 1.17510 0.83785 0.79904 0.85740 1.90840 1.51195 1.57707 1.38160 1.20027 0.96656 0.93803 0.96368 1.20075 1.03252 1.02767 0.89834 1.25280 1.05958 1.01611 1.04585 1.83024 1.47993 1.22256 0.94734 1.23702 1.11159 1.02174 0.96732 1.19332 0.76951 0.78413 0.87751 1.91157 1.54112 1.64219 1.23781 1.84522 1.61984 1.43511 1.43582 0.94384 0.95853 0.93061 0.95027 0.88239 0.92525 0.78043 0.82808 0.80802 0.72556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.16 8.51 37.16 0.32 -2.85 16 2 C -0.13 -3.12 5.45 -26.73 -0.15 -3.26 16 3 C 0.27 7.00 2.24 -69.09 -0.15 6.84 16 4 H 0.05 1.55 7.58 -51.93 -0.39 1.15 16 5 C -0.53 -14.27 8.73 -34.44 -0.30 -14.57 16 6 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 7 C 0.07 1.82 5.29 -17.82 -0.09 1.72 16 8 N -0.88 -25.03 11.29 55.43 0.63 -24.40 16 9 Si 0.90 20.81 29.54 -169.99 -5.02 15.79 16 10 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 11 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 12 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 13 N -0.70 -15.02 4.98 -55.95 -0.28 -15.30 16 14 C 0.55 11.69 5.64 -12.43 -0.07 11.62 16 15 O -0.50 -12.59 11.39 -18.54 -0.21 -12.80 16 16 C -0.05 -0.82 5.75 -105.92 -0.61 -1.43 16 17 C -0.13 -1.61 9.64 -41.09 -0.40 -2.01 16 18 C -0.24 -2.29 10.87 29.03 0.32 -1.97 16 19 S 0.25 2.56 22.92 -107.50 -2.46 0.09 16 20 C -0.22 -3.33 6.50 -36.16 -0.23 -3.56 16 21 C 0.54 8.80 8.25 34.20 0.28 9.08 16 22 O -0.45 -9.47 14.40 -27.26 -0.39 -9.86 16 23 O -0.52 -6.06 13.30 -40.92 -0.54 -6.61 16 24 H 0.04 0.85 5.64 -51.93 -0.29 0.55 16 25 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.05 1.27 7.84 -51.93 -0.41 0.86 16 27 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.10 2.70 5.95 -51.93 -0.31 2.39 16 29 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 30 H 0.39 7.18 8.23 -40.82 -0.34 6.85 16 31 H 0.15 1.69 8.06 -52.49 -0.42 1.27 16 32 H 0.17 1.08 8.06 -52.49 -0.42 0.66 16 33 H 0.42 2.97 9.11 45.56 0.42 3.39 16 LS Contribution 298.82 15.07 4.50 4.50 Total: -1.00 -34.11 298.82 -7.43 -41.54 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: -2.56 Total: 7.44 kcal Atomic # 6 Polarization: 0.70 SS G_CDS: -1.09 Total: -0.39 kcal Atomic # 7 Polarization: -40.05 SS G_CDS: 0.35 Total: -39.70 kcal Atomic # 8 Polarization: -28.12 SS G_CDS: -1.15 Total: -29.27 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Atomic # 16 Polarization: 2.56 SS G_CDS: -2.46 Total: 0.09 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -34.11 -7.43 -41.54 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604980731.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.863 kcal (2) G-P(sol) polarization free energy of solvation -34.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds