Wall clock time and date at job start Tue Mar 31 2020 06:21:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.32764 * 123.45502 * 2 1 4 4 S 1.75503 * 110.59191 * 179.73375 * 3 2 1 5 5 C 1.70441 * 92.45403 * 0.02562 * 4 3 2 6 6 C 1.36095 * 110.80928 * 359.97438 * 5 4 3 7 7 C 1.47112 * 123.47443 * 180.02562 * 6 5 4 8 8 O 1.21661 * 120.00375 * 148.85605 * 7 6 5 9 9 N 1.34783 * 119.99572 * 328.86086 * 7 6 5 10 10 C 1.36975 * 119.99636 * 186.07181 * 9 7 6 11 11 H 1.07996 * 119.99974 * 218.67380 * 10 9 7 12 12 C 1.38970 * 119.99869 * 38.67685 * 10 9 7 13 13 N 1.31421 * 120.00371 * 17.40217 * 12 10 9 14 14 Si 1.86801 * 120.00006 * 197.40445 * 12 10 9 15 15 H 1.48507 * 109.46987 * 59.99795 * 14 12 10 16 16 H 1.48496 * 109.47396 * 179.97438 * 14 12 10 17 17 H 1.48502 * 109.47101 * 300.00130 * 14 12 10 18 18 C 1.46498 * 120.00313 * 6.07239 * 9 7 6 19 19 C 1.53000 * 109.46994 * 98.14747 * 18 9 7 20 20 C 1.50701 * 109.47119 * 179.97438 * 19 18 9 21 21 O 1.20831 * 119.99591 * 0.02562 * 20 19 18 22 22 O 1.34229 * 120.00231 * 180.02562 * 20 19 18 23 23 H 1.08999 * 109.47440 * 90.02233 * 1 2 3 24 24 H 1.08999 * 109.46716 * 210.02319 * 1 2 3 25 25 H 1.09004 * 109.47077 * 330.01468 * 1 2 3 26 26 H 1.07999 * 124.70303 * 359.74582 * 3 2 1 27 27 H 1.07998 * 124.59943 * 180.02562 * 5 4 3 28 28 H 0.97001 * 119.99937 * 184.89729 * 13 12 10 29 29 H 1.08997 * 109.47217 * 218.15053 * 18 9 7 30 30 H 1.09000 * 109.46938 * 338.14876 * 18 9 7 31 31 H 1.08997 * 109.47389 * 300.00201 * 19 18 9 32 32 H 1.09000 * 109.47172 * 60.00273 * 19 18 9 33 33 H 0.96697 * 117.00181 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2389 1.1077 0.0000 4 16 3.9499 0.7170 0.0076 5 6 3.6419 -0.9594 0.0100 6 6 2.3033 -1.2051 0.0057 7 6 1.7268 -2.5585 0.0070 8 8 0.6568 -2.7634 0.5486 9 7 2.3840 -3.5715 -0.5917 10 6 1.7928 -4.8023 -0.6999 11 1 2.3821 -5.6978 -0.5692 12 6 0.4346 -4.8987 -0.9780 13 7 -0.2106 -3.8645 -1.4693 14 14 -0.4740 -6.4982 -0.6534 15 1 -0.3781 -6.8381 0.7890 16 1 -1.9017 -6.3419 -1.0308 17 1 0.1354 -7.5861 -1.4599 18 6 3.7307 -3.3562 -1.1267 19 6 4.7664 -3.8557 -0.1174 20 6 6.1517 -3.6348 -0.6680 21 8 6.2958 -3.1292 -1.7559 22 8 7.2254 -3.9996 0.0501 23 1 -0.3634 -0.0004 -1.0276 24 1 -0.3633 -0.8898 0.5142 25 1 -0.3633 0.8902 0.5136 26 1 1.8371 2.1101 -0.0039 27 1 4.4055 -1.7232 0.0150 28 1 -1.1712 -3.9081 -1.5968 29 1 3.8418 -3.9039 -2.0625 30 1 3.8838 -2.2923 -1.3081 31 1 4.6553 -3.3080 0.8184 32 1 4.6133 -4.9195 0.0640 33 1 8.0932 -3.8383 -0.3448 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001607934204.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:56 Heat of formation + Delta-G solvation = -90.003739 kcal Electronic energy + Delta-G solvation = -20577.984233 eV Core-core repulsion = 17309.782188 eV Total energy + Delta-G solvation = -3268.202045 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.49688 -40.59476 -38.00199 -37.23567 -36.45056 -34.34040 -31.89438 -31.84541 -28.64283 -27.00649 -26.01839 -24.17362 -22.31424 -21.81954 -19.75370 -19.18570 -18.62713 -18.25467 -17.69130 -17.10013 -16.77318 -16.54694 -15.92844 -15.48756 -15.13267 -14.67644 -14.55675 -14.12305 -13.97692 -13.59545 -13.38599 -13.24226 -13.11274 -12.89459 -12.73386 -12.60205 -12.57488 -12.49970 -12.18456 -11.94939 -11.76837 -11.64970 -10.88093 -10.07671 -9.65987 -9.20449 -9.05456 -8.19278 -5.98620 -0.01460 0.78008 1.05569 1.16644 1.29098 1.41832 1.49306 1.52733 2.01540 2.35274 2.73204 3.25230 3.31119 3.79051 3.88602 3.96164 4.15643 4.34930 4.45755 4.49011 4.59568 4.71525 4.75875 4.84212 4.91806 5.03956 5.12806 5.35584 5.47747 5.59498 5.70642 6.15932 6.98083 7.00434 7.18226 7.60270 8.31908 8.87093 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.012410 B = 0.008740 C = 0.005396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2255.633759 B = 3202.875468 C = 5187.363947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.086 4.086 3 C -0.233 4.233 4 S 0.210 5.790 5 C -0.250 4.250 6 C -0.152 4.152 7 C 0.519 3.481 8 O -0.569 6.569 9 N -0.456 5.456 10 C -0.360 4.360 11 H 0.094 0.906 12 C 0.014 3.986 13 N -0.859 5.859 14 Si 0.974 3.026 15 H -0.278 1.278 16 H -0.290 1.290 17 H -0.257 1.257 18 C 0.097 3.903 19 C -0.131 4.131 20 C 0.496 3.504 21 O -0.541 6.541 22 O -0.507 6.507 23 H 0.055 0.945 24 H 0.056 0.944 25 H 0.088 0.912 26 H 0.196 0.804 27 H 0.181 0.819 28 H 0.260 0.740 29 H 0.063 0.937 30 H 0.093 0.907 31 H 0.114 0.886 32 H 0.120 0.880 33 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.294 6.969 3.011 14.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.097 4.097 3 C -0.368 4.368 4 S 0.477 5.523 5 C -0.387 4.387 6 C -0.170 4.170 7 C 0.307 3.693 8 O -0.450 6.450 9 N -0.176 5.176 10 C -0.487 4.487 11 H 0.111 0.889 12 C -0.193 4.193 13 N -0.495 5.495 14 Si 0.799 3.201 15 H -0.203 1.203 16 H -0.216 1.216 17 H -0.182 1.182 18 C -0.027 4.027 19 C -0.170 4.170 20 C 0.339 3.661 21 O -0.432 6.432 22 O -0.321 6.321 23 H 0.074 0.926 24 H 0.075 0.925 25 H 0.107 0.893 26 H 0.213 0.787 27 H 0.198 0.802 28 H 0.069 0.931 29 H 0.081 0.919 30 H 0.111 0.889 31 H 0.132 0.868 32 H 0.138 0.862 33 H 0.292 0.708 Dipole moment (debyes) X Y Z Total from point charges 12.602 7.834 3.027 15.144 hybrid contribution -1.566 -1.787 -0.380 2.406 sum 11.036 6.048 2.646 12.860 Atomic orbital electron populations 1.20458 0.89742 1.03066 1.01739 1.19990 0.97596 0.90711 1.01443 1.25546 0.96881 1.02621 1.11705 1.82298 1.04495 0.95074 1.70456 1.26272 0.99295 1.04107 1.09055 1.20621 0.93291 0.95133 1.07919 1.17770 0.85833 0.84252 0.81400 1.90508 1.23606 1.83840 1.47077 1.43328 1.13874 1.10080 1.50346 1.19406 0.94060 0.84403 1.50835 0.88880 1.26058 0.98788 1.00587 0.93865 1.70009 1.08623 1.33176 1.37645 0.85312 0.77123 0.79118 0.78557 1.20348 1.21629 1.18179 1.21875 0.82759 1.02453 0.95608 1.21779 0.87238 1.06668 1.01272 1.23136 0.87558 0.73104 0.82253 1.90731 1.87553 1.42106 1.22786 1.84507 1.18845 1.77380 1.51347 0.92629 0.92471 0.89299 0.78688 0.80189 0.93096 0.91865 0.88946 0.86805 0.86185 0.70836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.55 9.91 71.24 0.71 -2.85 16 2 C -0.09 -3.30 6.00 -19.46 -0.12 -3.42 16 3 C -0.23 -6.71 10.91 66.64 0.73 -5.98 16 4 S 0.21 5.44 23.02 -56.49 -1.30 4.14 16 5 C -0.25 -8.60 8.40 67.32 0.57 -8.03 16 6 C -0.15 -6.55 5.59 -19.87 -0.11 -6.66 16 7 C 0.52 27.46 6.55 86.57 0.57 28.03 16 8 O -0.57 -34.51 12.29 -4.22 -0.05 -34.57 16 9 N -0.46 -23.02 2.56 -639.57 -1.64 -24.66 16 10 C -0.36 -19.56 9.25 84.07 0.78 -18.78 16 11 H 0.09 4.67 7.89 -2.91 -0.02 4.65 16 12 C 0.01 0.78 4.42 84.93 0.38 1.16 16 13 N -0.86 -52.07 11.33 21.67 0.25 -51.82 16 14 Si 0.97 45.00 29.59 68.60 2.03 47.03 16 15 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 16 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 17 H -0.26 -10.90 7.11 99.48 0.71 -10.20 16 18 C 0.10 3.89 4.16 86.38 0.36 4.25 16 19 C -0.13 -4.01 5.14 29.85 0.15 -3.85 16 20 C 0.50 13.15 8.14 71.24 0.58 13.73 16 21 O -0.54 -17.34 16.74 21.95 0.37 -16.97 16 22 O -0.51 -9.56 13.42 -51.40 -0.69 -10.25 16 23 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 24 H 0.06 2.72 5.93 -2.39 -0.01 2.71 16 25 H 0.09 2.68 8.13 -2.38 -0.02 2.66 16 26 H 0.20 4.10 8.06 -2.91 -0.02 4.08 16 27 H 0.18 5.75 3.34 -2.91 -0.01 5.74 16 28 H 0.26 15.29 8.32 -92.71 -0.77 14.52 16 29 H 0.06 2.65 8.06 -2.39 -0.02 2.64 16 30 H 0.09 3.62 4.17 -2.39 -0.01 3.61 16 31 H 0.11 3.28 7.06 -2.39 -0.02 3.26 16 32 H 0.12 3.60 8.14 -2.39 -0.02 3.58 16 33 H 0.43 3.93 9.10 -74.06 -0.67 3.25 16 Total: -1.00 -75.74 295.08 4.04 -71.69 By element: Atomic # 1 Polarization: 17.31 SS G_CDS: 0.50 Total: 17.81 kcal Atomic # 6 Polarization: -6.99 SS G_CDS: 4.58 Total: -2.41 kcal Atomic # 7 Polarization: -75.08 SS G_CDS: -1.39 Total: -76.48 kcal Atomic # 8 Polarization: -61.41 SS G_CDS: -0.37 Total: -61.79 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Atomic # 16 Polarization: 5.44 SS G_CDS: -1.30 Total: 4.14 kcal Total: -75.74 4.04 -71.69 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607934204.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.311 kcal (2) G-P(sol) polarization free energy of solvation -75.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds