Wall clock time and date at job start Tue Mar 31 2020 06:12:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 119.99635 * 2 1 4 4 H 1.48507 * 109.47107 * 269.99793 * 3 2 1 5 5 H 1.48497 * 109.47437 * 30.00286 * 3 2 1 6 6 H 1.48504 * 109.47168 * 150.00341 * 3 2 1 7 7 C 1.37875 * 120.00271 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00051 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00175 * 180.02562 * 7 2 1 10 10 O 1.42900 * 113.25229 * 312.94761 * 9 7 2 11 11 C 1.53504 * 114.17451 * 179.97438 * 9 7 2 12 12 N 1.47476 * 87.93581 * 220.13763 * 11 9 7 13 13 C 1.46900 * 111.00231 * 138.70598 * 12 11 9 14 14 C 1.50692 * 109.47445 * 170.00161 * 13 12 11 15 15 C 1.32743 * 124.70310 * 89.99302 * 14 13 12 16 16 C 1.44470 * 113.08953 * 179.72497 * 15 14 13 17 17 C 1.47037 * 123.47695 * 180.28282 * 16 15 14 18 18 O 1.21562 * 119.99478 * 0.23429 * 17 16 15 19 19 O 1.34792 * 119.99912 * 180.23246 * 17 16 15 20 20 C 1.36102 * 113.04986 * 0.47591 * 16 15 14 21 21 S 1.70452 * 110.80560 * 359.54000 * 20 16 15 22 22 C 1.47478 * 87.83512 * 27.01139 * 12 11 9 23 23 H 0.97000 * 120.00498 * 0.02562 * 1 2 3 24 24 H 0.96697 * 114.00339 * 47.05007 * 10 9 7 25 25 H 1.08997 * 113.47894 * 105.36542 * 11 9 7 26 26 H 1.09004 * 113.47784 * 334.90768 * 11 9 7 27 27 H 1.08992 * 109.47250 * 49.99282 * 13 12 11 28 28 H 1.09009 * 109.46983 * 289.99764 * 13 12 11 29 29 H 1.07998 * 123.45589 * 359.97438 * 15 14 13 30 30 H 0.96704 * 116.99891 * 179.97438 * 19 17 16 31 31 H 1.08002 * 124.60063 * 179.81354 * 20 16 15 32 32 H 1.08998 * 113.47630 * 87.75597 * 22 12 11 33 33 H 1.08998 * 113.47312 * 218.22494 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4647 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 8 4.0761 -0.2988 -0.9602 11 6 4.1402 -2.5944 0.0000 12 7 5.1460 -2.0847 0.9505 13 6 5.4202 -3.0696 2.0054 14 6 6.6155 -2.6260 2.8086 15 6 6.5567 -1.8592 3.8905 16 6 7.8541 -1.5928 4.4674 17 6 8.0534 -0.7745 5.6727 18 8 7.0961 -0.2849 6.2399 19 8 9.2973 -0.5671 6.1485 20 6 8.8734 -2.1741 3.7779 21 16 8.2785 -3.0519 2.4434 22 6 4.1439 -1.0985 1.3957 23 1 -0.4851 0.8400 -0.0004 24 1 3.6784 0.5826 -0.9577 25 1 4.5601 -2.8819 -0.9639 26 1 3.4919 -3.3615 0.4236 27 1 5.6263 -4.0393 1.5524 28 1 4.5526 -3.1516 2.6603 29 1 5.6333 -1.4771 4.3000 30 1 9.3782 -0.0220 6.9432 31 1 9.9174 -2.0940 4.0429 32 1 3.4965 -1.4664 2.1917 33 1 4.5670 -0.1182 1.6146 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608181357.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:15 Heat of formation + Delta-G solvation = -78.897039 kcal Electronic energy + Delta-G solvation = -19615.687723 eV Core-core repulsion = 16347.967300 eV Total energy + Delta-G solvation = -3267.720422 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.35649 -41.13820 -38.37112 -37.05969 -36.73657 -34.55111 -32.94052 -29.76934 -27.59018 -26.90015 -26.49703 -24.36925 -22.24613 -20.96571 -20.45226 -19.39822 -19.09501 -18.25929 -18.10634 -17.48317 -16.99056 -16.68524 -16.25195 -15.50367 -15.31088 -15.08182 -14.85498 -14.46964 -14.15126 -13.87547 -13.76498 -13.67751 -13.22236 -12.90296 -12.69981 -12.61509 -12.42773 -12.30696 -11.98579 -11.86565 -11.55236 -11.16827 -11.00219 -10.46073 -9.96664 -9.76271 -9.47797 -8.46643 -6.55586 -0.36423 0.48134 0.70185 0.88355 1.18327 1.26690 1.33900 2.00898 2.11230 2.13444 2.76789 3.07139 3.48601 3.71630 3.86593 4.01881 4.14741 4.15788 4.21705 4.48053 4.48996 4.60474 4.78702 4.80552 4.91161 4.99414 5.08580 5.15868 5.29953 5.37978 5.52422 5.99617 6.12375 6.49791 6.74259 6.94452 7.12173 8.69133 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.021345 B = 0.004681 C = 0.004156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.438048 B = 5979.947343 C = 6734.948765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.027 3.973 3 Si 0.916 3.084 4 H -0.251 1.251 5 H -0.285 1.285 6 H -0.244 1.244 7 C -0.542 4.542 8 H 0.056 0.944 9 C 0.182 3.818 10 O -0.554 6.554 11 C 0.027 3.973 12 N -0.464 5.464 13 C 0.081 3.919 14 C -0.196 4.196 15 C -0.101 4.101 16 C -0.181 4.181 17 C 0.552 3.448 18 O -0.556 6.556 19 O -0.501 6.501 20 C -0.173 4.173 21 S 0.278 5.722 22 C -0.023 4.023 23 H 0.272 0.728 24 H 0.349 0.651 25 H 0.089 0.911 26 H 0.086 0.914 27 H 0.106 0.894 28 H 0.066 0.934 29 H 0.133 0.867 30 H 0.433 0.567 31 H 0.207 0.793 32 H 0.074 0.926 33 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.655 -5.422 8.429 22.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.173 4.173 3 Si 0.742 3.258 4 H -0.176 1.176 5 H -0.211 1.211 6 H -0.168 1.168 7 C -0.580 4.580 8 H 0.074 0.926 9 C 0.142 3.858 10 O -0.365 6.365 11 C -0.101 4.101 12 N -0.186 5.186 13 C -0.048 4.048 14 C -0.313 4.313 15 C -0.130 4.130 16 C -0.197 4.197 17 C 0.396 3.604 18 O -0.449 6.449 19 O -0.315 6.315 20 C -0.311 4.311 21 S 0.545 5.455 22 C -0.152 4.152 23 H 0.082 0.918 24 H 0.201 0.799 25 H 0.107 0.893 26 H 0.104 0.896 27 H 0.124 0.876 28 H 0.084 0.916 29 H 0.151 0.849 30 H 0.295 0.705 31 H 0.224 0.776 32 H 0.092 0.908 33 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 21.938 -6.640 6.748 23.893 hybrid contribution -2.172 2.418 2.326 3.997 sum 19.765 -4.222 9.075 22.155 Atomic orbital electron populations 1.69991 1.07797 1.28606 1.50027 1.25767 0.95584 1.02691 0.93299 0.86361 0.79614 0.79812 0.80031 1.17637 1.21131 1.16805 1.21512 0.90307 0.94324 1.51865 0.92580 1.20228 0.90099 0.89676 0.85820 1.86446 1.64268 1.24903 1.60873 1.23873 0.92448 0.95880 0.97919 1.68890 1.30011 1.09445 1.10282 1.21244 0.93677 0.96721 0.93202 1.24237 1.00358 1.06368 1.00365 1.20944 0.97164 0.98836 0.96047 1.19219 0.93617 1.08057 0.98843 1.20217 0.80502 0.76878 0.82793 1.90907 1.43504 1.50263 1.60241 1.84503 1.29470 1.68955 1.48549 1.26255 1.04964 1.00437 0.99483 1.82891 0.94996 1.44913 1.22675 1.24820 0.93150 0.97436 0.99840 0.91838 0.79877 0.89287 0.89608 0.87554 0.91627 0.84946 0.70470 0.77580 0.90823 0.92046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.15 13.96 21.45 0.30 -54.85 16 2 C 0.03 1.51 5.47 84.65 0.46 1.98 16 3 Si 0.92 41.68 24.41 68.60 1.67 43.35 16 4 H -0.25 -10.70 7.06 99.48 0.70 -10.00 16 5 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 6 H -0.24 -10.59 5.46 99.48 0.54 -10.05 16 7 C -0.54 -29.72 9.27 25.60 0.24 -29.48 16 8 H 0.06 3.33 8.06 -2.91 -0.02 3.30 16 9 C 0.18 8.52 1.09 -11.20 -0.01 8.51 16 10 O -0.55 -26.56 13.32 -148.98 -1.98 -28.55 16 11 C 0.03 1.05 7.09 83.57 0.59 1.64 16 12 N -0.46 -16.64 6.32 -932.97 -5.89 -22.53 16 13 C 0.08 2.28 5.27 85.55 0.45 2.74 16 14 C -0.20 -5.13 6.02 24.51 0.15 -4.98 16 15 C -0.10 -2.89 9.95 22.68 0.23 -2.67 16 16 C -0.18 -4.48 5.98 -19.88 -0.12 -4.60 16 17 C 0.55 13.78 8.30 70.13 0.58 14.36 16 18 O -0.56 -18.13 17.58 19.64 0.35 -17.78 16 19 O -0.50 -7.92 13.08 -57.03 -0.75 -8.66 16 20 C -0.17 -3.14 10.56 67.32 0.71 -2.43 16 21 S 0.28 5.17 23.00 -56.49 -1.30 3.87 16 22 C -0.02 -0.95 6.55 83.57 0.55 -0.40 16 23 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 24 H 0.35 16.11 3.17 -74.06 -0.23 15.88 16 25 H 0.09 3.25 8.14 -2.39 -0.02 3.23 16 26 H 0.09 3.08 7.87 -2.38 -0.02 3.06 16 27 H 0.11 2.45 8.08 -2.39 -0.02 2.43 16 28 H 0.07 1.88 7.30 -2.38 -0.02 1.86 16 29 H 0.13 4.20 8.06 -2.91 -0.02 4.18 16 30 H 0.43 2.91 9.11 -74.05 -0.67 2.24 16 31 H 0.21 2.40 8.02 -2.91 -0.02 2.38 16 32 H 0.07 3.05 7.38 -2.39 -0.02 3.03 16 33 H 0.06 2.66 7.11 -2.39 -0.02 2.64 16 Total: -1.00 -70.40 297.46 -3.68 -74.08 By element: Atomic # 1 Polarization: 26.33 SS G_CDS: 0.09 Total: 26.42 kcal Atomic # 6 Polarization: -19.18 SS G_CDS: 3.83 Total: -15.35 kcal Atomic # 7 Polarization: -71.79 SS G_CDS: -5.59 Total: -77.38 kcal Atomic # 8 Polarization: -52.60 SS G_CDS: -2.39 Total: -54.99 kcal Atomic # 14 Polarization: 41.68 SS G_CDS: 1.67 Total: 43.35 kcal Atomic # 16 Polarization: 5.17 SS G_CDS: -1.30 Total: 3.87 kcal Total: -70.40 -3.68 -74.08 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608181357.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.816 kcal (2) G-P(sol) polarization free energy of solvation -70.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds