Wall clock time and date at job start Tue Mar 31 2020 06:16:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00173 * 2 1 4 4 H 1.48499 * 109.47238 * 269.99846 * 3 2 1 5 5 H 1.48509 * 109.46968 * 29.99502 * 3 2 1 6 6 H 1.48499 * 109.47289 * 149.99463 * 3 2 1 7 7 C 1.37880 * 120.00015 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99887 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00166 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.47284 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47213 * 180.02562 * 10 9 7 12 12 N 1.46495 * 109.46975 * 180.02562 * 11 10 9 13 13 C 1.34773 * 119.99964 * 179.97438 * 12 11 10 14 14 O 1.21580 * 119.99993 * 359.97438 * 13 12 11 15 15 C 1.47625 * 120.00197 * 179.97438 * 13 12 11 16 16 C 1.38735 * 123.62860 * 322.07619 * 15 13 12 17 17 C 1.33388 * 115.05830 * 180.33078 * 16 15 13 18 18 S 1.70520 * 111.40403 * 359.73080 * 17 16 15 19 19 C 1.38138 * 123.63309 * 141.90718 * 15 13 12 20 20 C 1.46804 * 125.49623 * 359.96144 * 19 15 13 21 21 O 1.21570 * 119.99796 * 353.86331 * 20 19 15 22 22 O 1.34850 * 119.99939 * 173.87341 * 20 19 15 23 23 H 0.96999 * 119.99733 * 0.02562 * 1 2 3 24 24 H 1.08999 * 109.47113 * 59.99669 * 9 7 2 25 25 H 1.08998 * 109.46885 * 300.00427 * 9 7 2 26 26 H 1.08998 * 109.46852 * 59.99598 * 10 9 7 27 27 H 1.09005 * 109.46813 * 300.00039 * 10 9 7 28 28 H 1.08992 * 109.46953 * 59.99916 * 11 10 9 29 29 H 1.09002 * 109.46460 * 299.99664 * 11 10 9 30 30 H 0.97003 * 120.00271 * 359.97438 * 12 11 10 31 31 H 1.08007 * 122.47226 * 0.03906 * 16 15 13 32 32 H 1.08002 * 124.29740 * 179.75642 * 17 16 15 33 33 H 0.96705 * 117.00441 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0011 10 6 4.0216 -2.6366 0.0010 11 6 5.5515 -2.6366 0.0022 12 7 6.0398 -4.0178 0.0015 13 6 7.3648 -4.2641 0.0018 14 8 8.1549 -3.3400 0.0023 15 6 7.8569 -5.6559 0.0017 16 6 7.2537 -6.6842 0.7112 17 6 7.8453 -7.8740 0.5945 18 16 9.2081 -7.7938 -0.4272 19 6 8.9656 -6.0754 -0.7077 20 6 9.8089 -5.2224 -1.5541 21 8 9.4895 -4.0682 -1.7634 22 8 10.9376 -5.7192 -2.0996 23 1 -0.4850 0.8401 -0.0004 24 1 3.8746 -0.6800 0.8911 25 1 3.8752 -0.6804 -0.8888 26 1 3.6585 -3.1502 -0.8892 27 1 3.6578 -3.1506 0.8908 28 1 5.9141 -2.1231 0.8926 29 1 5.9155 -2.1225 -0.8873 30 1 5.4095 -4.7551 0.0008 31 1 6.3729 -6.5316 1.3174 32 1 7.5041 -8.7740 1.0845 33 1 11.4600 -5.1198 -2.6500 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608181451.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:41 Heat of formation + Delta-G solvation = -99.495012 kcal Electronic energy + Delta-G solvation = -18997.709140 eV Core-core repulsion = 15729.095523 eV Total energy + Delta-G solvation = -3268.613617 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.56611 -39.51477 -37.44563 -36.18132 -35.43765 -33.27039 -31.44954 -30.58561 -27.82597 -25.99057 -23.18936 -22.70454 -21.50928 -20.50716 -19.20872 -18.96724 -17.83352 -16.92541 -16.48799 -16.03522 -15.79281 -15.40140 -15.25610 -14.74076 -14.14852 -13.99966 -13.55102 -13.29733 -13.21887 -12.80773 -12.67115 -11.96346 -11.88738 -11.73701 -11.51665 -11.06130 -10.91064 -10.82911 -10.17690 -9.96193 -9.76385 -9.57935 -9.41499 -9.21491 -9.06542 -8.78913 -8.54240 -6.05327 -4.03905 -0.17269 0.91678 1.37543 1.65857 2.45496 2.67502 3.11341 3.33019 3.37580 3.40569 3.45267 4.45581 4.45953 4.71351 4.80572 4.99033 5.29017 5.40881 5.54737 5.64924 5.68315 5.69883 6.04698 6.21837 6.37163 6.47235 6.71978 6.80964 7.24839 7.38202 7.61472 7.66481 7.77837 8.33821 8.51474 8.98483 9.57151 11.07920 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.030630 B = 0.003201 C = 0.002964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.904253 B = 8744.005697 C = 9442.931531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.066 3.934 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.264 1.264 7 C -0.522 4.522 8 H 0.072 0.928 9 C -0.011 4.011 10 C -0.113 4.113 11 C 0.116 3.884 12 N -0.718 5.718 13 C 0.560 3.440 14 O -0.500 6.500 15 C -0.058 4.058 16 C -0.130 4.130 17 C -0.235 4.235 18 S 0.275 5.725 19 C -0.217 4.217 20 C 0.539 3.461 21 O -0.457 6.457 22 O -0.519 6.519 23 H 0.263 0.737 24 H 0.019 0.981 25 H 0.015 0.985 26 H 0.060 0.940 27 H 0.061 0.939 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.399 0.601 31 H 0.156 0.844 32 H 0.178 0.822 33 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.568 -19.821 -0.738 28.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.135 4.135 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.560 4.560 8 H 0.090 0.910 9 C -0.049 4.049 10 C -0.151 4.151 11 C -0.007 4.007 12 N -0.370 5.370 13 C 0.342 3.658 14 O -0.374 6.374 15 C -0.077 4.077 16 C -0.160 4.160 17 C -0.373 4.373 18 S 0.545 5.455 19 C -0.337 4.337 20 C 0.379 3.621 21 O -0.342 6.342 22 O -0.332 6.332 23 H 0.073 0.927 24 H 0.037 0.963 25 H 0.033 0.967 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.233 0.767 31 H 0.174 0.826 32 H 0.196 0.804 33 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges 21.727 -20.040 -1.036 29.576 hybrid contribution -0.838 1.859 0.238 2.053 sum 20.889 -18.181 -0.798 27.704 Atomic orbital electron populations 1.69913 1.06320 1.26951 1.51077 1.25026 0.94745 0.99243 0.94460 0.86778 0.80418 0.83504 0.78626 1.20229 1.21377 1.18860 1.21099 0.89314 0.94501 1.51046 0.91006 1.19506 0.97241 0.91473 0.96723 1.21708 0.90555 1.01074 1.01750 1.21684 0.96079 0.80730 1.02178 1.46011 1.05950 1.10196 1.74805 1.17577 0.83044 0.87017 0.78158 1.90871 1.55083 1.44412 1.47056 1.19653 0.94479 0.95853 0.97736 1.20038 1.02752 0.90670 1.02527 1.25363 1.02473 1.03237 1.06221 1.83191 1.23256 1.00387 1.38661 1.23764 1.02066 0.99175 1.08731 1.19298 0.79365 0.85230 0.78197 1.91124 1.70538 1.16768 1.55736 1.84519 1.35939 1.49006 1.63784 0.92706 0.96262 0.96696 0.92082 0.92061 0.91595 0.91557 0.76659 0.82616 0.80432 0.72220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.91 13.96 55.43 0.77 -27.13 16 2 C 0.07 1.94 5.47 -17.82 -0.10 1.85 16 3 Si 0.88 21.97 27.47 -169.99 -4.67 17.30 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.26 -6.37 6.54 56.52 0.37 -6.00 16 7 C -0.52 -14.78 9.66 -34.44 -0.33 -15.11 16 8 H 0.07 2.16 7.99 -52.48 -0.42 1.74 16 9 C -0.01 -0.27 4.04 -27.88 -0.11 -0.38 16 10 C -0.11 -2.13 5.27 -26.73 -0.14 -2.27 16 11 C 0.12 1.99 5.67 -4.05 -0.02 1.97 16 12 N -0.72 -10.44 5.52 -61.33 -0.34 -10.78 16 13 C 0.56 8.92 7.07 -12.43 -0.09 8.83 16 14 O -0.50 -10.06 14.25 -18.55 -0.26 -10.32 16 15 C -0.06 -0.71 5.75 -105.92 -0.61 -1.32 16 16 C -0.13 -1.12 9.65 -41.09 -0.40 -1.52 16 17 C -0.24 -1.51 10.87 29.04 0.32 -1.19 16 18 S 0.28 1.95 22.92 -107.50 -2.46 -0.52 16 19 C -0.22 -2.51 6.50 -36.16 -0.23 -2.75 16 20 C 0.54 6.93 8.25 34.19 0.28 7.21 16 21 O -0.46 -7.83 14.40 -27.26 -0.39 -8.23 16 22 O -0.52 -4.46 13.30 -40.90 -0.54 -5.00 16 23 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 24 H 0.02 0.46 7.20 -51.93 -0.37 0.08 16 25 H 0.01 0.35 7.57 -51.93 -0.39 -0.04 16 26 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 27 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 28 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 29 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.40 4.60 8.16 -40.82 -0.33 4.26 16 31 H 0.16 1.06 8.06 -52.48 -0.42 0.64 16 32 H 0.18 0.60 8.06 -52.49 -0.42 0.17 16 33 H 0.42 1.78 9.11 45.56 0.42 2.20 16 LS Contribution 307.79 15.07 4.64 4.64 Total: -1.00 -37.07 307.79 -7.51 -44.58 By element: Atomic # 1 Polarization: 2.96 SS G_CDS: -2.81 Total: 0.15 kcal Atomic # 6 Polarization: -3.25 SS G_CDS: -1.44 Total: -4.69 kcal Atomic # 7 Polarization: -38.35 SS G_CDS: 0.44 Total: -37.91 kcal Atomic # 8 Polarization: -22.35 SS G_CDS: -1.20 Total: -23.55 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.67 Total: 17.30 kcal Atomic # 16 Polarization: 1.95 SS G_CDS: -2.46 Total: -0.52 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -37.07 -7.51 -44.58 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608181451.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.915 kcal (2) G-P(sol) polarization free energy of solvation -37.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds