Wall clock time and date at job start Tue Mar 31 2020 06:07:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31372 * 1 3 3 Si 1.86801 * 120.00051 * 2 1 4 4 H 1.48497 * 109.47086 * 275.25858 * 3 2 1 5 5 H 1.48499 * 109.47313 * 35.26148 * 3 2 1 6 6 H 1.48505 * 109.47308 * 155.26159 * 3 2 1 7 7 C 1.39035 * 120.00151 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99638 * 341.84437 * 7 2 1 9 9 N 1.36886 * 120.00373 * 161.83535 * 7 2 1 10 10 C 1.46501 * 120.00000 * 318.96796 * 9 7 2 11 11 C 1.50695 * 109.47379 * 269.99775 * 10 9 7 12 12 O 1.20828 * 119.99930 * 0.02562 * 11 10 9 13 13 O 1.34227 * 120.00184 * 179.97438 * 11 10 9 14 14 C 1.34772 * 120.00040 * 138.96405 * 9 7 2 15 15 O 1.21606 * 120.00007 * 183.46884 * 14 9 7 16 16 C 1.47620 * 119.99862 * 3.47336 * 14 9 7 17 17 C 1.39716 * 120.10701 * 327.71153 * 16 14 9 18 18 C 1.37868 * 119.97699 * 179.97438 * 17 16 14 19 19 C 1.38543 * 120.18503 * 359.97438 * 18 17 16 20 20 F 1.35104 * 119.89258 * 179.97438 * 19 18 17 21 21 C 1.39093 * 120.21294 * 0.02562 * 19 18 17 22 22 O 1.35959 * 119.99192 * 179.72033 * 21 19 18 23 23 C 1.38302 * 120.02072 * 359.97438 * 21 19 18 24 24 H 0.97001 * 119.99429 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.47179 * 29.99985 * 10 9 7 26 26 H 1.09001 * 109.47176 * 149.99506 * 10 9 7 27 27 H 0.96706 * 116.99887 * 180.02562 * 13 11 10 28 28 H 1.08007 * 120.00640 * 359.95344 * 17 16 14 29 29 H 1.07998 * 119.90714 * 179.97438 * 18 17 16 30 30 H 0.96701 * 113.99984 * 89.99588 * 22 21 19 31 31 H 1.08001 * 120.09285 * 179.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3137 0.0000 0.0000 3 14 2.2477 1.6177 0.0000 4 1 2.3841 2.1106 -1.3942 5 1 1.5053 2.6180 0.8083 6 1 3.5965 1.4107 0.5859 7 6 2.0089 -1.2041 0.0005 8 1 1.5092 -2.1159 0.2924 9 7 3.3266 -1.2338 -0.3690 10 6 3.7863 -0.4349 -1.5077 11 6 3.6747 -1.2494 -2.7706 12 8 3.2539 -2.3811 -2.7244 13 8 4.0418 -0.7175 -3.9470 14 6 4.2011 -1.9980 0.3147 15 8 5.3824 -1.9762 0.0267 16 6 3.7250 -2.8617 1.4132 17 6 2.6365 -2.4658 2.1945 18 6 2.1937 -3.2747 3.2194 19 6 2.8250 -4.4807 3.4773 20 9 2.3865 -5.2685 4.4835 21 6 3.9094 -4.8824 2.7044 22 8 4.5291 -6.0641 2.9651 23 6 4.3608 -4.0777 1.6741 24 1 -0.4849 0.8401 0.0004 25 1 3.1696 0.4595 -1.5966 26 1 4.8257 -0.1455 -1.3526 27 1 3.9518 -1.2783 -4.7297 28 1 2.1423 -1.5262 1.9957 29 1 1.3524 -2.9674 3.8228 30 1 4.1593 -6.8168 2.4837 31 1 5.2029 -4.3883 1.0736 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608183731.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:20 Heat of formation + Delta-G solvation = -162.263104 kcal Electronic energy + Delta-G solvation = -22328.069163 eV Core-core repulsion = 18490.520541 eV Total energy + Delta-G solvation = -3837.548622 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.073 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -48.64198 -40.18066 -39.36961 -38.26639 -36.24302 -35.71108 -35.10081 -32.28307 -30.59040 -29.83422 -27.89571 -25.36564 -23.17477 -22.50067 -21.49400 -19.71058 -18.52706 -17.73896 -17.46861 -17.20483 -16.62158 -16.32978 -15.71318 -15.49281 -15.17418 -14.98025 -14.65083 -14.06996 -13.86133 -13.59110 -13.44447 -13.06020 -12.84179 -12.61456 -12.29026 -11.84793 -11.56163 -11.33193 -11.19693 -11.09632 -10.66846 -10.45142 -10.25822 -10.05844 -9.54856 -9.00324 -8.63759 -8.22408 -8.13554 -6.73757 -4.40218 1.16394 1.52207 2.73526 2.83813 3.00441 3.07769 3.13127 3.46965 3.84327 3.97491 4.14092 4.31123 4.56198 4.72898 5.12883 5.38153 5.54606 5.55906 5.70553 5.73668 5.81563 6.07084 6.25971 6.36850 6.66420 6.86216 6.90851 6.91131 7.08205 7.72659 7.74087 7.97439 8.38898 8.59361 8.94521 9.26295 10.33553 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.018132 B = 0.006652 C = 0.005438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.868167 B = 4208.003940 C = 5147.946582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.843 5.843 2 C 0.066 3.934 3 Si 0.862 3.138 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.253 1.253 7 C -0.352 4.352 8 H 0.116 0.884 9 N -0.441 5.441 10 C 0.106 3.894 11 C 0.465 3.535 12 O -0.497 6.497 13 O -0.526 6.526 14 C 0.537 3.463 15 O -0.582 6.582 16 C -0.096 4.096 17 C -0.041 4.041 18 C -0.158 4.158 19 C 0.082 3.918 20 F -0.139 7.139 21 C 0.048 3.952 22 O -0.489 6.489 23 C -0.071 4.071 24 H 0.281 0.719 25 H 0.107 0.893 26 H 0.116 0.884 27 H 0.401 0.599 28 H 0.181 0.819 29 H 0.140 0.860 30 H 0.386 0.614 31 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.195 -2.297 0.612 3.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C -0.143 4.143 3 Si 0.688 3.312 4 H -0.194 1.194 5 H -0.203 1.203 6 H -0.176 1.176 7 C -0.479 4.479 8 H 0.133 0.867 9 N -0.161 5.161 10 C -0.019 4.019 11 C 0.305 3.695 12 O -0.383 6.383 13 O -0.337 6.337 14 C 0.328 3.672 15 O -0.467 6.467 16 C -0.099 4.099 17 C -0.059 4.059 18 C -0.177 4.177 19 C 0.062 3.938 20 F -0.118 7.118 21 C 0.002 3.998 22 O -0.298 6.298 23 C -0.091 4.091 24 H 0.091 0.909 25 H 0.124 0.876 26 H 0.134 0.866 27 H 0.259 0.741 28 H 0.197 0.803 29 H 0.158 0.842 30 H 0.240 0.760 31 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 3.818 -1.925 1.239 4.452 hybrid contribution -0.396 -0.040 -0.860 0.948 sum 3.422 -1.965 0.380 3.964 Atomic orbital electron populations 1.69708 1.06141 1.28740 1.43017 1.25409 0.95255 0.98510 0.95156 0.87113 0.81702 0.83487 0.78944 1.19399 1.20327 1.17608 1.19251 0.83870 0.96680 1.48100 0.86695 1.43184 1.09249 1.41209 1.22463 1.21337 1.03700 0.94213 0.82605 1.24346 0.73275 0.86846 0.85025 1.90679 1.41242 1.19723 1.86607 1.84562 1.80317 1.50587 1.18260 1.18064 0.84874 0.82042 0.82209 1.90673 1.16556 1.69313 1.70112 1.19705 0.97248 0.95176 0.97778 1.22412 0.92427 1.01337 0.89765 1.21149 1.02274 0.93622 1.00677 1.18366 0.95060 0.91511 0.88887 1.91454 1.88790 1.73621 1.57939 1.18104 0.94484 0.89775 0.97412 1.84886 1.59022 1.15836 1.70068 1.21309 0.99173 0.93347 0.95259 0.90869 0.87551 0.86568 0.74117 0.80254 0.84221 0.75962 0.84200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -20.91 13.95 55.50 0.77 -20.14 16 2 C 0.07 1.56 5.31 -17.45 -0.09 1.47 16 3 Si 0.86 17.65 24.92 -169.99 -4.24 13.41 16 4 H -0.27 -5.26 6.73 56.52 0.38 -4.88 16 5 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 6 H -0.25 -5.15 7.11 56.52 0.40 -4.75 16 7 C -0.35 -8.32 6.56 -15.00 -0.10 -8.42 16 8 H 0.12 2.90 6.43 -52.49 -0.34 2.56 16 9 N -0.44 -9.99 1.61 -117.25 -0.19 -10.18 16 10 C 0.11 2.19 4.79 -5.20 -0.02 2.17 16 11 C 0.47 9.35 8.40 36.00 0.30 9.65 16 12 O -0.50 -11.52 17.19 -18.75 -0.32 -11.85 16 13 O -0.53 -8.18 13.42 -39.25 -0.53 -8.71 16 14 C 0.54 12.18 7.40 -12.43 -0.09 12.09 16 15 O -0.58 -14.03 16.32 5.27 0.09 -13.95 16 16 C -0.10 -1.94 5.52 -104.98 -0.58 -2.52 16 17 C -0.04 -0.78 7.74 -39.17 -0.30 -1.08 16 18 C -0.16 -2.63 10.00 -39.60 -0.40 -3.02 16 19 C 0.08 1.37 7.32 -39.15 -0.29 1.08 16 20 F -0.14 -2.28 17.10 2.25 0.04 -2.24 16 21 C 0.05 0.80 6.70 -39.24 -0.26 0.53 16 22 O -0.49 -7.18 13.36 -19.61 -0.26 -7.44 16 23 C -0.07 -1.30 9.54 -39.02 -0.37 -1.68 16 24 H 0.28 6.48 8.31 -40.82 -0.34 6.14 16 25 H 0.11 2.14 3.42 -51.93 -0.18 1.96 16 26 H 0.12 2.22 7.38 -51.93 -0.38 1.84 16 27 H 0.40 4.30 9.10 45.56 0.41 4.71 16 28 H 0.18 3.57 5.40 -52.48 -0.28 3.29 16 29 H 0.14 2.00 8.06 -52.49 -0.42 1.58 16 30 H 0.39 3.75 9.06 45.56 0.41 4.16 16 31 H 0.14 2.49 7.96 -52.49 -0.42 2.08 16 LS Contribution 283.21 15.07 4.27 4.27 Total: -1.00 -30.19 283.21 -2.92 -33.11 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: -0.35 Total: 13.43 kcal Atomic # 6 Polarization: 12.48 SS G_CDS: -2.21 Total: 10.28 kcal Atomic # 7 Polarization: -30.91 SS G_CDS: 0.59 Total: -30.32 kcal Atomic # 8 Polarization: -40.92 SS G_CDS: -1.03 Total: -41.94 kcal Atomic # 9 Polarization: -2.28 SS G_CDS: 0.04 Total: -2.24 kcal Atomic # 14 Polarization: 17.65 SS G_CDS: -4.24 Total: 13.41 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -30.19 -2.92 -33.11 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608183731.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.152 kcal (2) G-P(sol) polarization free energy of solvation -30.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds