Wall clock time and date at job start Tue Mar 31 2020 06:07:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31372 * 1 3 3 Si 1.86801 * 120.00051 * 2 1 4 4 H 1.48497 * 109.47086 * 275.25858 * 3 2 1 5 5 H 1.48499 * 109.47313 * 35.26148 * 3 2 1 6 6 H 1.48505 * 109.47308 * 155.26159 * 3 2 1 7 7 C 1.39035 * 120.00151 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99638 * 341.84437 * 7 2 1 9 9 N 1.36886 * 120.00373 * 161.83535 * 7 2 1 10 10 C 1.46501 * 120.00000 * 318.96796 * 9 7 2 11 11 C 1.50695 * 109.47379 * 269.99775 * 10 9 7 12 12 O 1.20828 * 119.99930 * 0.02562 * 11 10 9 13 13 O 1.34227 * 120.00184 * 179.97438 * 11 10 9 14 14 C 1.34772 * 120.00040 * 138.96405 * 9 7 2 15 15 O 1.21606 * 120.00007 * 183.46884 * 14 9 7 16 16 C 1.47620 * 119.99862 * 3.47336 * 14 9 7 17 17 C 1.39716 * 120.10701 * 327.71153 * 16 14 9 18 18 C 1.37868 * 119.97699 * 179.97438 * 17 16 14 19 19 C 1.38543 * 120.18503 * 359.97438 * 18 17 16 20 20 F 1.35104 * 119.89258 * 179.97438 * 19 18 17 21 21 C 1.39093 * 120.21294 * 0.02562 * 19 18 17 22 22 O 1.35959 * 119.99192 * 179.72033 * 21 19 18 23 23 C 1.38302 * 120.02072 * 359.97438 * 21 19 18 24 24 H 0.97001 * 119.99429 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.47179 * 29.99985 * 10 9 7 26 26 H 1.09001 * 109.47176 * 149.99506 * 10 9 7 27 27 H 0.96706 * 116.99887 * 180.02562 * 13 11 10 28 28 H 1.08007 * 120.00640 * 359.95344 * 17 16 14 29 29 H 1.07998 * 119.90714 * 179.97438 * 18 17 16 30 30 H 0.96701 * 113.99984 * 89.99588 * 22 21 19 31 31 H 1.08001 * 120.09285 * 179.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3137 0.0000 0.0000 3 14 2.2477 1.6177 0.0000 4 1 2.3841 2.1106 -1.3942 5 1 1.5053 2.6180 0.8083 6 1 3.5965 1.4107 0.5859 7 6 2.0089 -1.2041 0.0005 8 1 1.5092 -2.1159 0.2924 9 7 3.3266 -1.2338 -0.3690 10 6 3.7863 -0.4349 -1.5077 11 6 3.6747 -1.2494 -2.7706 12 8 3.2539 -2.3811 -2.7244 13 8 4.0418 -0.7175 -3.9470 14 6 4.2011 -1.9980 0.3147 15 8 5.3824 -1.9762 0.0267 16 6 3.7250 -2.8617 1.4132 17 6 2.6365 -2.4658 2.1945 18 6 2.1937 -3.2747 3.2194 19 6 2.8250 -4.4807 3.4773 20 9 2.3865 -5.2685 4.4835 21 6 3.9094 -4.8824 2.7044 22 8 4.5291 -6.0641 2.9651 23 6 4.3608 -4.0777 1.6741 24 1 -0.4849 0.8401 0.0004 25 1 3.1696 0.4595 -1.5966 26 1 4.8257 -0.1455 -1.3526 27 1 3.9518 -1.2783 -4.7297 28 1 2.1423 -1.5262 1.9957 29 1 1.3524 -2.9674 3.8228 30 1 4.1593 -6.8168 2.4837 31 1 5.2029 -4.3883 1.0736 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608183731.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:20 Heat of formation + Delta-G solvation = -184.927937 kcal Electronic energy + Delta-G solvation = -22329.051984 eV Core-core repulsion = 18490.520541 eV Total energy + Delta-G solvation = -3838.531443 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.073 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.97223 -41.79389 -40.85615 -39.73946 -37.58048 -37.29158 -36.77810 -34.08178 -32.05995 -31.26694 -29.45510 -27.14581 -24.67393 -23.90042 -22.99811 -21.32978 -20.05462 -19.27298 -19.03018 -18.62658 -18.08739 -17.81148 -17.27067 -16.88723 -16.79570 -16.54393 -16.14413 -15.63873 -15.40454 -15.02265 -14.87647 -14.55868 -14.46698 -14.19298 -13.78651 -13.50355 -13.03060 -12.90116 -12.71791 -12.59045 -12.27941 -11.94676 -11.81375 -11.69201 -11.24211 -10.74461 -10.08843 -9.87617 -9.61340 -8.53262 -6.23451 -0.28363 0.15013 1.14831 1.21666 1.36439 1.46642 1.55448 1.95969 2.14901 2.45029 2.57440 2.92910 2.99482 3.28529 3.76277 3.79776 3.94669 4.15226 4.20921 4.27436 4.35274 4.75210 4.84008 4.95724 5.17671 5.25290 5.42699 5.56366 5.70232 5.96394 6.12192 6.67323 6.80688 6.97123 7.16279 7.50387 8.57160 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.018132 B = 0.006652 C = 0.005438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.868167 B = 4208.003940 C = 5147.946582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.036 3.964 3 Si 0.908 3.092 4 H -0.249 1.249 5 H -0.275 1.275 6 H -0.252 1.252 7 C -0.348 4.348 8 H 0.091 0.909 9 N -0.448 5.448 10 C 0.096 3.904 11 C 0.472 3.528 12 O -0.535 6.535 13 O -0.507 6.507 14 C 0.530 3.470 15 O -0.604 6.604 16 C -0.119 4.119 17 C -0.047 4.047 18 C -0.148 4.148 19 C 0.085 3.915 20 F -0.133 7.133 21 C 0.062 3.938 22 O -0.492 6.492 23 C -0.076 4.076 24 H 0.285 0.715 25 H 0.113 0.887 26 H 0.131 0.869 27 H 0.426 0.574 28 H 0.166 0.834 29 H 0.164 0.836 30 H 0.410 0.590 31 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.691 -2.164 0.729 4.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.171 4.171 3 Si 0.731 3.269 4 H -0.175 1.175 5 H -0.200 1.200 6 H -0.176 1.176 7 C -0.475 4.475 8 H 0.108 0.892 9 N -0.168 5.168 10 C -0.029 4.029 11 C 0.313 3.687 12 O -0.424 6.424 13 O -0.320 6.320 14 C 0.322 3.678 15 O -0.490 6.490 16 C -0.122 4.122 17 C -0.066 4.066 18 C -0.166 4.166 19 C 0.065 3.935 20 F -0.112 7.112 21 C 0.017 3.983 22 O -0.304 6.304 23 C -0.096 4.096 24 H 0.095 0.905 25 H 0.131 0.869 26 H 0.149 0.851 27 H 0.288 0.712 28 H 0.183 0.817 29 H 0.181 0.819 30 H 0.269 0.731 31 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 4.314 -1.800 1.312 4.856 hybrid contribution -0.520 -0.198 -0.914 1.071 sum 3.794 -1.998 0.397 4.307 Atomic orbital electron populations 1.69769 1.07405 1.29727 1.44578 1.25872 0.95638 1.00901 0.94662 0.86374 0.80480 0.80127 0.79883 1.17504 1.20039 1.17604 1.19009 0.84070 0.96134 1.48323 0.89179 1.43230 1.08825 1.41494 1.23243 1.21476 1.04586 0.94224 0.82588 1.24117 0.72497 0.86030 0.86026 1.90672 1.43181 1.21240 1.87346 1.84480 1.79128 1.50439 1.18000 1.18495 0.84674 0.82070 0.82568 1.90634 1.17259 1.70106 1.70989 1.19704 0.98577 0.95986 0.97978 1.22185 0.92351 1.01335 0.90685 1.21293 1.02417 0.93048 0.99886 1.18368 0.94923 0.91424 0.88813 1.91475 1.88683 1.73394 1.57632 1.18005 0.93810 0.90240 0.96277 1.84826 1.59183 1.15934 1.70483 1.21311 0.99269 0.93049 0.95947 0.90458 0.86932 0.85140 0.71239 0.81724 0.81859 0.73099 0.84164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -43.99 13.95 21.68 0.30 -43.69 16 2 C 0.04 1.69 5.31 84.95 0.45 2.14 16 3 Si 0.91 35.50 24.92 68.60 1.71 37.21 16 4 H -0.25 -9.01 6.73 99.48 0.67 -8.34 16 5 H -0.27 -10.58 7.11 99.48 0.71 -9.87 16 6 H -0.25 -9.82 7.11 99.48 0.71 -9.11 16 7 C -0.35 -16.70 6.56 84.10 0.55 -16.15 16 8 H 0.09 4.70 6.43 -2.91 -0.02 4.69 16 9 N -0.45 -20.39 1.61 -643.13 -1.04 -21.43 16 10 C 0.10 3.85 4.79 85.63 0.41 4.26 16 11 C 0.47 18.47 8.40 71.23 0.60 19.07 16 12 O -0.54 -24.78 17.19 21.96 0.38 -24.40 16 13 O -0.51 -14.58 13.42 -51.39 -0.69 -15.27 16 14 C 0.53 24.28 7.40 86.72 0.64 24.92 16 15 O -0.60 -29.24 16.32 -4.05 -0.07 -29.31 16 16 C -0.12 -4.86 5.52 -20.10 -0.11 -4.97 16 17 C -0.05 -1.78 7.74 22.54 0.17 -1.61 16 18 C -0.15 -4.73 10.00 22.25 0.22 -4.50 16 19 C 0.08 2.68 7.32 22.55 0.16 2.84 16 20 F -0.13 -4.02 17.10 44.97 0.77 -3.25 16 21 C 0.06 1.99 6.70 22.49 0.15 2.14 16 22 O -0.49 -13.23 13.36 -93.09 -1.24 -14.47 16 23 C -0.08 -2.75 9.54 22.63 0.22 -2.53 16 24 H 0.29 13.20 8.31 -92.71 -0.77 12.43 16 25 H 0.11 4.35 3.42 -2.39 -0.01 4.34 16 26 H 0.13 4.83 7.38 -2.39 -0.02 4.82 16 27 H 0.43 7.96 9.10 -74.05 -0.67 7.29 16 28 H 0.17 6.72 5.40 -2.91 -0.02 6.70 16 29 H 0.16 4.37 8.06 -2.91 -0.02 4.35 16 30 H 0.41 6.84 9.06 -74.06 -0.67 6.17 16 31 H 0.14 4.98 7.96 -2.91 -0.02 4.96 16 Total: -1.00 -64.04 283.21 3.45 -60.58 By element: Atomic # 1 Polarization: 28.54 SS G_CDS: -0.14 Total: 28.40 kcal Atomic # 6 Polarization: 22.15 SS G_CDS: 3.47 Total: 25.62 kcal Atomic # 7 Polarization: -64.38 SS G_CDS: -0.73 Total: -65.12 kcal Atomic # 8 Polarization: -81.82 SS G_CDS: -1.62 Total: -83.45 kcal Atomic # 9 Polarization: -4.02 SS G_CDS: 0.77 Total: -3.25 kcal Atomic # 14 Polarization: 35.50 SS G_CDS: 1.71 Total: 37.21 kcal Total: -64.04 3.45 -60.58 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608183731.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.346 kcal (2) G-P(sol) polarization free energy of solvation -64.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds