Wall clock time and date at job start Tue Mar 31 2020 05:26:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31255 * 1 3 3 Si 1.86802 * 119.99844 * 2 1 4 4 H 1.48500 * 109.47380 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47227 * 300.00433 * 3 2 1 6 6 H 1.48498 * 109.47147 * 60.00223 * 3 2 1 7 7 C 1.39221 * 120.00335 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00107 * 158.65382 * 7 2 1 9 9 N 1.36605 * 119.99828 * 338.64181 * 7 2 1 10 10 C 1.46502 * 119.99924 * 343.94847 * 9 7 2 11 11 C 1.50699 * 109.47196 * 96.29292 * 10 9 7 12 12 O 1.20824 * 119.99974 * 359.97438 * 11 10 9 13 13 O 1.34230 * 119.99749 * 179.97438 * 11 10 9 14 14 C 1.34770 * 120.00125 * 163.94047 * 9 7 2 15 15 O 1.21692 * 119.99823 * 5.33571 * 14 9 7 16 16 C 1.47040 * 120.00335 * 185.33729 * 14 9 7 17 17 C 1.36893 * 125.14591 * 186.95279 * 16 14 9 18 18 C 1.36522 * 114.76994 * 179.97438 * 17 16 14 19 19 C 1.37123 * 114.70494 * 0.02562 * 18 17 16 20 20 C 1.46143 * 125.18100 * 179.97438 * 19 18 17 21 21 O 1.21379 * 119.99606 * 0.02562 * 20 19 18 22 22 S 1.75825 * 125.14156 * 6.92956 * 16 14 9 23 23 H 0.96998 * 120.00558 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.47120 * 216.29425 * 10 9 7 25 25 H 1.09004 * 109.46889 * 336.28689 * 10 9 7 26 26 H 0.96701 * 116.99978 * 180.02562 * 13 11 10 27 27 H 1.08006 * 122.61529 * 0.25443 * 17 16 14 28 28 H 1.08005 * 122.65091 * 179.97438 * 18 17 16 29 29 H 1.08003 * 120.00155 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3126 0.0000 0.0000 3 14 2.2465 1.6178 0.0000 4 1 3.7065 1.3465 -0.0006 5 1 1.8877 2.3965 -1.2124 6 1 1.8878 2.3964 1.2125 7 6 2.0087 -1.2057 -0.0005 8 1 3.0332 -1.2375 -0.3410 9 7 1.3961 -2.3483 0.4298 10 6 0.1585 -2.2668 1.2096 11 6 -1.0251 -2.4389 0.2929 12 8 -0.8527 -2.6115 -0.8904 13 8 -2.2709 -2.4005 0.7911 14 6 1.9300 -3.5505 0.1369 15 8 3.0069 -3.6172 -0.4260 16 6 1.2115 -4.7817 0.4974 17 6 1.7109 -6.0503 0.3745 18 6 0.8606 -7.0410 0.7737 19 6 -0.3552 -6.6026 1.2319 20 6 -1.4337 -7.4632 1.7135 21 8 -1.2879 -8.6681 1.7284 22 16 -0.4191 -4.8471 1.1519 23 1 -0.4851 0.8400 0.0004 24 1 0.1517 -3.0539 1.9636 25 1 0.1009 -1.2945 1.6990 26 1 -2.9982 -2.5163 0.1643 27 1 2.7022 -6.2516 -0.0042 28 1 1.1242 -8.0875 0.7311 29 1 -2.3601 -7.0270 2.0570 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608184435.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:10 Heat of formation + Delta-G solvation = -98.599996 kcal Electronic energy + Delta-G solvation = -20193.567597 eV Core-core repulsion = 16789.159696 eV Total energy + Delta-G solvation = -3404.407901 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 283.039 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.80754 -39.03752 -38.43380 -36.59230 -35.42165 -34.75349 -32.26406 -29.92698 -28.15383 -26.51213 -24.62975 -22.20960 -21.54535 -20.64551 -18.18378 -17.81854 -17.49642 -17.13519 -16.43180 -15.98491 -15.67751 -15.06488 -14.80844 -14.50884 -14.26403 -14.18915 -13.66141 -13.28314 -12.71473 -12.48975 -12.30177 -11.96101 -11.87326 -11.66390 -11.21986 -10.79905 -10.65586 -10.55587 -10.42408 -9.94408 -9.85023 -9.36448 -8.94191 -8.48984 -8.38839 -8.17005 -6.85652 -4.16446 0.28716 1.68548 2.05823 2.14884 2.94741 3.06264 3.07256 3.14114 3.28669 3.53878 3.85363 4.04366 4.34067 4.35290 4.73789 5.23958 5.38675 5.44225 5.58665 5.69217 6.09390 6.20060 6.24019 6.44272 6.60033 7.16070 7.27324 7.42532 7.60263 7.99417 8.70842 8.73763 8.88768 9.46789 10.21007 Molecular weight = 283.04amu Principal moments of inertia in cm(-1) A = 0.028446 B = 0.006339 C = 0.005418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.092521 B = 4415.871673 C = 5166.346515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.031 3.969 3 Si 0.938 3.062 4 H -0.262 1.262 5 H -0.278 1.278 6 H -0.275 1.275 7 C -0.292 4.292 8 H 0.120 0.880 9 N -0.403 5.403 10 C 0.119 3.881 11 C 0.489 3.511 12 O -0.494 6.494 13 O -0.526 6.526 14 C 0.501 3.499 15 O -0.563 6.563 16 C -0.166 4.166 17 C -0.125 4.125 18 C -0.049 4.049 19 C -0.353 4.353 20 C 0.415 3.585 21 O -0.471 6.471 22 S 0.194 5.806 23 H 0.280 0.720 24 H 0.089 0.911 25 H 0.146 0.854 26 H 0.397 0.603 27 H 0.152 0.848 28 H 0.144 0.856 29 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.537 -3.720 5.947 8.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.175 4.175 3 Si 0.763 3.237 4 H -0.186 1.186 5 H -0.204 1.204 6 H -0.200 1.200 7 C -0.421 4.421 8 H 0.137 0.863 9 N -0.120 5.120 10 C -0.009 4.009 11 C 0.327 3.673 12 O -0.379 6.379 13 O -0.338 6.338 14 C 0.291 3.709 15 O -0.448 6.448 16 C -0.289 4.289 17 C -0.156 4.156 18 C -0.082 4.082 19 C -0.471 4.471 20 C 0.274 3.726 21 O -0.346 6.346 22 S 0.464 5.536 23 H 0.091 0.909 24 H 0.106 0.894 25 H 0.163 0.837 26 H 0.254 0.746 27 H 0.169 0.831 28 H 0.162 0.838 29 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -5.799 -3.178 5.997 8.927 hybrid contribution 0.597 -0.080 -0.972 1.143 sum -5.202 -3.258 5.025 7.932 Atomic orbital electron populations 1.69727 1.06491 1.29062 1.44463 1.25480 0.95445 1.00676 0.95928 0.85671 0.80125 0.79737 0.78211 1.18610 1.20355 1.20015 1.20002 0.98411 0.82961 1.40689 0.86250 1.43396 1.18948 1.05696 1.43969 1.21141 0.82044 1.05584 0.92116 1.23201 0.83515 0.71513 0.89037 1.90663 1.85547 1.44402 1.17300 1.84489 1.16972 1.86048 1.46251 1.16808 0.87760 0.81333 0.84998 1.90681 1.21985 1.85375 1.46734 1.25516 0.97526 0.99422 1.06404 1.20384 1.01983 0.89909 1.03353 1.20590 0.91465 1.00642 0.95456 1.26017 1.02402 1.00939 1.17758 1.22912 0.89017 0.87688 0.72986 1.90532 1.82388 1.17561 1.44127 1.84428 1.12466 0.98544 1.58148 0.90950 0.89448 0.83682 0.74622 0.83082 0.83813 0.88027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -20.42 9.30 55.51 0.52 -19.90 15 2 C 0.03 0.73 4.89 -17.43 -0.09 0.64 15 3 Si 0.94 18.56 29.61 -169.99 -5.03 13.53 15 4 H -0.26 -5.22 7.11 56.52 0.40 -4.82 15 5 H -0.28 -5.60 7.11 56.52 0.40 -5.20 15 6 H -0.27 -5.23 7.11 56.52 0.40 -4.83 15 7 C -0.29 -7.48 9.37 -15.06 -0.14 -7.62 15 8 H 0.12 3.19 7.33 -52.49 -0.38 2.80 15 9 N -0.40 -9.75 2.17 -117.47 -0.26 -10.00 15 10 C 0.12 2.44 4.76 -5.19 -0.02 2.41 15 11 C 0.49 9.93 3.39 36.01 0.12 10.05 15 12 O -0.49 -11.98 16.71 -18.75 -0.31 -12.29 15 13 O -0.53 -8.28 13.26 -39.26 -0.52 -8.80 15 14 C 0.50 12.25 7.37 -12.70 -0.09 12.15 15 15 O -0.56 -15.39 16.46 5.20 0.09 -15.31 15 16 C -0.17 -3.36 6.20 -36.50 -0.23 -3.59 15 17 C -0.13 -2.25 9.88 -40.69 -0.40 -2.66 15 18 C -0.05 -0.77 9.88 -40.61 -0.40 -1.17 15 19 C -0.35 -5.38 6.44 -36.82 -0.24 -5.62 15 20 C 0.41 5.50 11.70 33.90 0.40 5.89 15 21 O -0.47 -7.59 17.63 5.47 0.10 -7.49 15 22 S 0.19 3.17 15.81 -107.50 -1.70 1.47 15 23 H 0.28 6.23 8.31 -40.82 -0.34 5.89 15 24 H 0.09 1.54 5.08 -26.86 -0.14 1.40 15 25 H 0.15 2.99 6.29 -51.93 -0.33 2.66 15 26 H 0.40 4.65 9.10 45.56 0.41 5.07 15 27 H 0.15 2.62 8.05 -52.48 -0.42 2.20 15 28 H 0.14 2.02 8.04 -52.48 -0.42 1.60 15 29 H 0.10 0.95 8.06 -52.48 -0.42 0.53 15 LS Contribution 276.39 15.07 4.17 4.17 Total: -1.00 -31.94 276.39 -4.88 -36.83 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -0.83 Total: 7.29 kcal Atomic # 6 Polarization: 11.60 SS G_CDS: -1.09 Total: 10.51 kcal Atomic # 7 Polarization: -30.16 SS G_CDS: 0.26 Total: -29.90 kcal Atomic # 8 Polarization: -43.24 SS G_CDS: -0.65 Total: -43.89 kcal Atomic # 14 Polarization: 18.56 SS G_CDS: -5.03 Total: 13.53 kcal Atomic # 16 Polarization: 3.17 SS G_CDS: -1.70 Total: 1.47 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -31.94 -4.88 -36.83 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608184435.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.773 kcal (2) G-P(sol) polarization free energy of solvation -31.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds