Wall clock time and date at job start Tue Mar 31 2020 05:26:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31255 * 1 3 3 Si 1.86802 * 119.99844 * 2 1 4 4 H 1.48500 * 109.47380 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47227 * 300.00433 * 3 2 1 6 6 H 1.48498 * 109.47147 * 60.00223 * 3 2 1 7 7 C 1.39221 * 120.00335 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00107 * 158.65382 * 7 2 1 9 9 N 1.36605 * 119.99828 * 338.64181 * 7 2 1 10 10 C 1.46502 * 119.99924 * 343.94847 * 9 7 2 11 11 C 1.50699 * 109.47196 * 96.29292 * 10 9 7 12 12 O 1.20824 * 119.99974 * 359.97438 * 11 10 9 13 13 O 1.34230 * 119.99749 * 179.97438 * 11 10 9 14 14 C 1.34770 * 120.00125 * 163.94047 * 9 7 2 15 15 O 1.21692 * 119.99823 * 5.33571 * 14 9 7 16 16 C 1.47040 * 120.00335 * 185.33729 * 14 9 7 17 17 C 1.36893 * 125.14591 * 186.95279 * 16 14 9 18 18 C 1.36522 * 114.76994 * 179.97438 * 17 16 14 19 19 C 1.37123 * 114.70494 * 0.02562 * 18 17 16 20 20 C 1.46143 * 125.18100 * 179.97438 * 19 18 17 21 21 O 1.21379 * 119.99606 * 0.02562 * 20 19 18 22 22 S 1.75825 * 125.14156 * 6.92956 * 16 14 9 23 23 H 0.96998 * 120.00558 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.47120 * 216.29425 * 10 9 7 25 25 H 1.09004 * 109.46889 * 336.28689 * 10 9 7 26 26 H 0.96701 * 116.99978 * 180.02562 * 13 11 10 27 27 H 1.08006 * 122.61529 * 0.25443 * 17 16 14 28 28 H 1.08005 * 122.65091 * 179.97438 * 18 17 16 29 29 H 1.08003 * 120.00155 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3126 0.0000 0.0000 3 14 2.2465 1.6178 0.0000 4 1 3.7065 1.3465 -0.0006 5 1 1.8877 2.3965 -1.2124 6 1 1.8878 2.3964 1.2125 7 6 2.0087 -1.2057 -0.0005 8 1 3.0332 -1.2375 -0.3410 9 7 1.3961 -2.3483 0.4298 10 6 0.1585 -2.2668 1.2096 11 6 -1.0251 -2.4389 0.2929 12 8 -0.8527 -2.6115 -0.8904 13 8 -2.2709 -2.4005 0.7911 14 6 1.9300 -3.5505 0.1369 15 8 3.0069 -3.6172 -0.4260 16 6 1.2115 -4.7817 0.4974 17 6 1.7109 -6.0503 0.3745 18 6 0.8606 -7.0410 0.7737 19 6 -0.3552 -6.6026 1.2319 20 6 -1.4337 -7.4632 1.7135 21 8 -1.2879 -8.6681 1.7284 22 16 -0.4191 -4.8471 1.1519 23 1 -0.4851 0.8400 0.0004 24 1 0.1517 -3.0539 1.9636 25 1 0.1009 -1.2945 1.6990 26 1 -2.9982 -2.5163 0.1643 27 1 2.7022 -6.2516 -0.0042 28 1 1.1242 -8.0875 0.7311 29 1 -2.3601 -7.0270 2.0570 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608184435.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:09 Heat of formation + Delta-G solvation = -121.530760 kcal Electronic energy + Delta-G solvation = -20194.561950 eV Core-core repulsion = 16789.159696 eV Total energy + Delta-G solvation = -3405.402254 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 283.039 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.45722 -40.37924 -39.97260 -38.00837 -37.06128 -36.44726 -34.05168 -31.36669 -29.79637 -28.05615 -26.21606 -23.52656 -23.09887 -22.18934 -19.57692 -19.39516 -19.16094 -18.73117 -17.88158 -17.54660 -17.10101 -16.66277 -16.33584 -15.97343 -15.73890 -15.61109 -15.25126 -14.84156 -14.23175 -13.99105 -13.85406 -13.62090 -13.37195 -13.19007 -12.77710 -12.56970 -12.20658 -12.13117 -11.83624 -11.67199 -11.10895 -11.01788 -10.79494 -10.15035 -9.86970 -9.58887 -8.61881 -6.06830 -1.05365 0.27376 0.66841 0.83894 1.38622 1.43102 1.57330 1.64171 1.83289 2.00660 2.21909 2.40719 2.67775 2.97478 3.29427 3.65416 3.92065 4.18157 4.27827 4.41396 4.53242 4.72464 4.89632 5.06646 5.23672 5.32393 5.81209 5.89650 6.19635 6.33393 6.88744 7.05244 7.33169 7.66746 8.44616 Molecular weight = 283.04amu Principal moments of inertia in cm(-1) A = 0.028446 B = 0.006339 C = 0.005418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.092521 B = 4415.871673 C = 5166.346515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.008 3.992 3 Si 0.999 3.001 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.254 1.254 7 C -0.343 4.343 8 H 0.088 0.912 9 N -0.417 5.417 10 C 0.116 3.884 11 C 0.500 3.500 12 O -0.538 6.538 13 O -0.506 6.506 14 C 0.491 3.509 15 O -0.613 6.613 16 C -0.223 4.223 17 C -0.106 4.106 18 C -0.063 4.063 19 C -0.329 4.329 20 C 0.425 3.575 21 O -0.491 6.491 22 S 0.242 5.758 23 H 0.285 0.715 24 H 0.116 0.884 25 H 0.142 0.858 26 H 0.419 0.581 27 H 0.148 0.852 28 H 0.166 0.834 29 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.161 -4.696 7.521 12.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.197 4.197 3 Si 0.821 3.179 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.178 1.178 7 C -0.471 4.471 8 H 0.106 0.894 9 N -0.133 5.133 10 C -0.011 4.011 11 C 0.340 3.660 12 O -0.427 6.427 13 O -0.319 6.319 14 C 0.283 3.717 15 O -0.501 6.501 16 C -0.345 4.345 17 C -0.139 4.139 18 C -0.095 4.095 19 C -0.448 4.448 20 C 0.285 3.715 21 O -0.367 6.367 22 S 0.514 5.486 23 H 0.096 0.904 24 H 0.132 0.868 25 H 0.160 0.840 26 H 0.280 0.720 27 H 0.166 0.834 28 H 0.184 0.816 29 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -8.500 -4.132 7.610 12.134 hybrid contribution 1.249 -0.071 -1.398 1.876 sum -7.251 -4.203 6.213 10.433 Atomic orbital electron populations 1.69764 1.07056 1.29918 1.44456 1.26146 0.96238 1.02597 0.94673 0.84800 0.78314 0.76060 0.78681 1.19640 1.20495 1.17832 1.19819 0.98008 0.84744 1.44490 0.89369 1.43431 1.20179 1.05196 1.44482 1.21273 0.81089 1.06469 0.92230 1.23039 0.84557 0.70372 0.88081 1.90656 1.86385 1.46639 1.19054 1.84416 1.16068 1.85087 1.46303 1.17424 0.87424 0.82716 0.84183 1.90608 1.24122 1.86589 1.48805 1.25193 1.00352 0.98231 1.10688 1.20578 1.02186 0.89783 1.01320 1.20749 0.91513 1.01168 0.96073 1.26622 1.02680 1.00789 1.14662 1.23645 0.89516 0.86824 0.71522 1.90556 1.82696 1.18789 1.44626 1.84010 1.09143 0.98999 1.56461 0.90408 0.86765 0.84033 0.72046 0.83412 0.81647 0.82336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -41.75 9.30 21.71 0.20 -41.54 15 2 C 0.01 0.39 4.89 85.02 0.42 0.80 15 3 Si 1.00 38.85 29.61 68.60 2.03 40.88 15 4 H -0.27 -10.87 7.11 99.48 0.71 -10.17 15 5 H -0.28 -10.85 7.11 99.48 0.71 -10.14 15 6 H -0.25 -8.98 7.11 99.48 0.71 -8.27 15 7 C -0.34 -18.56 9.37 84.19 0.79 -17.78 15 8 H 0.09 5.15 7.33 -2.91 -0.02 5.13 15 9 N -0.42 -20.99 2.17 -643.78 -1.40 -22.39 15 10 C 0.12 4.75 4.76 85.63 0.41 5.16 15 11 C 0.50 19.75 3.39 71.24 0.24 19.99 15 12 O -0.54 -26.12 16.71 21.97 0.37 -25.75 15 13 O -0.51 -14.45 13.26 -51.41 -0.68 -15.13 15 14 C 0.49 25.21 7.37 86.55 0.64 25.85 15 15 O -0.61 -35.88 16.46 -4.32 -0.07 -35.96 15 16 C -0.22 -9.06 6.20 24.26 0.15 -8.91 15 17 C -0.11 -3.76 9.88 21.55 0.21 -3.55 15 18 C -0.06 -1.83 9.88 21.61 0.21 -1.62 15 19 C -0.33 -8.74 6.44 24.06 0.15 -8.58 15 20 C 0.43 8.99 11.70 69.87 0.82 9.80 15 21 O -0.49 -13.59 17.63 -3.34 -0.06 -13.65 15 22 S 0.24 7.30 15.81 -56.49 -0.89 6.41 15 23 H 0.29 12.57 8.31 -92.71 -0.77 11.80 15 24 H 0.12 3.88 5.08 -18.32 -0.09 3.79 15 25 H 0.14 5.84 6.29 -2.39 -0.01 5.82 15 26 H 0.42 8.36 9.10 -74.06 -0.67 7.69 15 27 H 0.15 5.23 8.05 -2.91 -0.02 5.21 15 28 H 0.17 4.12 8.04 -2.91 -0.02 4.10 15 29 H 0.16 1.80 8.06 -2.91 -0.02 1.77 15 Total: -1.00 -73.25 276.39 4.01 -69.23 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: 0.48 Total: 16.73 kcal Atomic # 6 Polarization: 17.12 SS G_CDS: 4.04 Total: 21.16 kcal Atomic # 7 Polarization: -62.74 SS G_CDS: -1.20 Total: -63.93 kcal Atomic # 8 Polarization: -90.04 SS G_CDS: -0.44 Total: -90.48 kcal Atomic # 14 Polarization: 38.85 SS G_CDS: 2.03 Total: 40.88 kcal Atomic # 16 Polarization: 7.30 SS G_CDS: -0.89 Total: 6.41 kcal Total: -73.25 4.01 -69.23 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608184435.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.297 kcal (2) G-P(sol) polarization free energy of solvation -73.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds