Wall clock time and date at job start Tue Mar 31 2020 06:19:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 S 1.70592 * 124.51289 * 2 1 4 4 C 1.75807 * 91.65061 * 180.02562 * 3 2 1 5 5 C 1.46366 * 125.40840 * 179.97438 * 4 3 2 6 6 O 1.21633 * 120.00052 * 180.02562 * 5 4 3 7 7 O 1.34906 * 119.99727 * 0.02562 * 5 4 3 8 8 C 1.36776 * 109.18579 * 359.73781 * 4 3 2 9 9 C 1.34293 * 124.51712 * 180.02562 * 2 1 3 10 10 N 1.40691 * 122.52884 * 359.97438 * 9 2 1 11 11 C 1.34777 * 120.00004 * 186.56742 * 10 9 2 12 12 O 1.21303 * 119.99712 * 354.59915 * 11 10 9 13 13 C 1.50698 * 119.99838 * 174.60384 * 11 10 9 14 14 C 1.53003 * 109.47019 * 179.97438 * 13 11 10 15 15 C 1.50698 * 109.47399 * 180.02562 * 14 13 11 16 16 H 1.08003 * 119.99591 * 0.02562 * 15 14 13 17 17 C 1.37877 * 120.00166 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99932 * 180.02562 * 17 15 14 19 19 Si 1.86801 * 119.99904 * 0.02562 * 17 15 14 20 20 H 1.48496 * 109.47184 * 89.99916 * 19 17 15 21 21 H 1.48502 * 109.46929 * 209.99857 * 19 17 15 22 22 H 1.48496 * 109.47016 * 329.99639 * 19 17 15 23 23 H 1.09006 * 109.47079 * 269.97420 * 1 2 3 24 24 H 1.08995 * 109.47085 * 29.97627 * 1 2 3 25 25 H 1.08996 * 109.47004 * 149.97386 * 1 2 3 26 26 H 0.96704 * 113.99860 * 180.02562 * 7 5 4 27 27 H 1.07995 * 123.37754 * 180.23906 * 8 4 3 28 28 H 0.97005 * 120.00018 * 6.56049 * 10 9 2 29 29 H 1.08998 * 109.47657 * 299.99797 * 13 11 10 30 30 H 1.08998 * 109.47168 * 59.99964 * 13 11 10 31 31 H 1.08994 * 109.47403 * 300.00155 * 14 13 11 32 32 H 1.09003 * 109.47210 * 60.00045 * 14 13 11 33 33 H 0.96998 * 120.00092 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 16 2.4736 1.4057 0.0000 4 6 3.9504 0.4517 -0.0008 5 6 5.3100 0.9936 -0.0017 6 8 6.2649 0.2402 -0.0026 7 8 5.5040 2.3286 -0.0014 8 6 3.6270 -0.8773 0.0049 9 6 2.2680 -1.1065 -0.0005 10 7 1.7193 -2.4020 -0.0005 11 6 2.5243 -3.4748 0.1324 12 8 3.7285 -3.3305 0.1537 13 6 1.9283 -4.8535 0.2547 14 6 3.0508 -5.8840 0.3922 15 6 2.4549 -7.2628 0.5138 16 1 1.3827 -7.3913 0.4944 17 6 3.2784 -8.3603 0.6497 18 7 2.7583 -9.5636 0.7553 19 14 5.1328 -8.1379 0.6839 20 1 5.5817 -7.9384 2.0853 21 1 5.7867 -9.3470 0.1220 22 1 5.5041 -6.9516 -0.1285 23 1 -0.3633 -0.0005 1.0277 24 1 -0.3633 0.8902 -0.5134 25 1 -0.3633 -0.8897 -0.5142 26 1 6.4348 2.5908 -0.0025 27 1 4.3627 -1.6678 0.0094 28 1 0.7616 -2.5231 -0.0962 29 1 1.2865 -4.8953 1.1346 30 1 1.3393 -5.0749 -0.6354 31 1 3.6923 -5.8422 -0.4880 32 1 3.6401 -5.6628 1.2821 33 1 3.3376 -10.3356 0.8513 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001610589544.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:47 Heat of formation + Delta-G solvation = -98.501568 kcal Electronic energy + Delta-G solvation = -19157.416436 eV Core-core repulsion = 15888.845898 eV Total energy + Delta-G solvation = -3268.570538 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.65269 -40.08248 -37.74990 -36.24582 -33.94903 -33.54220 -32.14674 -31.32249 -27.87565 -26.21208 -24.29466 -22.71901 -21.34334 -20.17500 -19.11286 -18.66946 -17.72634 -17.37048 -16.62471 -15.92835 -15.77577 -15.43815 -15.14197 -14.30803 -14.17652 -14.05660 -13.75900 -13.48133 -13.00072 -12.78048 -12.60244 -12.36261 -12.22371 -11.79695 -11.49434 -11.23186 -11.02466 -10.86809 -10.57362 -10.22897 -10.09802 -9.81694 -9.30887 -9.24263 -8.87484 -8.54546 -7.96885 -6.06780 -4.06412 0.14662 1.23166 1.64312 1.92874 2.66888 2.77023 3.10437 3.27926 3.36625 3.43684 3.54102 4.48043 4.50954 4.77380 4.97378 5.09132 5.17733 5.28729 5.35547 5.42982 5.64974 5.80214 5.91750 5.94444 6.08949 6.11081 6.54904 6.60927 7.28071 7.34926 7.45094 7.59724 7.73075 8.30317 8.47409 8.95142 9.55870 11.05832 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.022525 B = 0.004010 C = 0.003417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.755742 B = 6981.435126 C = 8192.613674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.254 4.254 3 S 0.243 5.757 4 C -0.265 4.265 5 C 0.554 3.446 6 O -0.497 6.497 7 O -0.506 6.506 8 C -0.050 4.050 9 C 0.128 3.872 10 N -0.664 5.664 11 C 0.511 3.489 12 O -0.514 6.514 13 C -0.119 4.119 14 C 0.000 4.000 15 C -0.527 4.527 16 H 0.073 0.927 17 C 0.071 3.929 18 N -0.902 5.902 19 Si 0.876 3.124 20 H -0.276 1.276 21 H -0.288 1.288 22 H -0.260 1.260 23 H 0.079 0.921 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.414 0.586 27 H 0.199 0.801 28 H 0.412 0.588 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.026 0.974 32 H 0.021 0.979 33 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.377 25.720 -2.040 26.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.378 4.378 3 S 0.511 5.489 4 C -0.383 4.383 5 C 0.396 3.604 6 O -0.386 6.386 7 O -0.318 6.318 8 C -0.085 4.085 9 C 0.021 3.979 10 N -0.310 5.310 11 C 0.301 3.699 12 O -0.389 6.389 13 C -0.159 4.159 14 C -0.038 4.038 15 C -0.565 4.565 16 H 0.091 0.909 17 C -0.131 4.131 18 N -0.541 5.541 19 Si 0.703 3.297 20 H -0.202 1.202 21 H -0.214 1.214 22 H -0.185 1.185 23 H 0.097 0.903 24 H 0.093 0.907 25 H 0.093 0.907 26 H 0.271 0.729 27 H 0.215 0.785 28 H 0.249 0.751 29 H 0.110 0.890 30 H 0.110 0.890 31 H 0.044 0.956 32 H 0.039 0.961 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.956 26.793 -1.987 27.156 hybrid contribution 1.269 -1.464 0.017 1.938 sum -2.686 25.328 -1.971 25.547 Atomic orbital electron populations 1.20263 0.86977 1.03386 1.03123 1.23879 1.01902 0.97355 1.14621 1.82888 0.92400 1.04756 1.68898 1.23294 0.95165 0.97497 1.22346 1.19278 0.87999 0.80417 0.72676 1.91006 1.42356 1.59503 1.45722 1.84989 1.36180 1.24078 1.86522 1.21796 0.96515 0.96093 0.94059 1.16547 0.91592 0.85444 1.04303 1.43775 1.11553 1.02887 1.72778 1.21925 0.87097 0.87021 0.73834 1.90490 1.15243 1.85456 1.47715 1.21718 1.01877 0.88548 1.03728 1.19405 0.93305 0.93206 0.97861 1.21061 0.95242 0.89151 1.51061 0.90869 1.24960 0.98872 0.95058 0.94222 1.69905 1.35609 0.98349 1.50199 0.86810 0.85790 0.78005 0.79055 1.20180 1.21377 1.18476 0.90279 0.90748 0.90686 0.72862 0.78496 0.75121 0.88978 0.89030 0.95597 0.96058 0.92638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.53 10.01 36.01 0.36 -0.17 16 2 C -0.25 -2.60 6.29 -35.70 -0.22 -2.83 16 3 S 0.24 2.35 22.86 -107.50 -2.46 -0.11 16 4 C -0.26 -3.52 6.45 -36.84 -0.24 -3.76 16 5 C 0.55 7.27 8.27 34.00 0.28 7.55 16 6 O -0.50 -8.25 17.57 -19.37 -0.34 -8.59 16 7 O -0.51 -4.54 13.40 -41.06 -0.55 -5.09 16 8 C -0.05 -0.77 8.89 -40.26 -0.36 -1.12 16 9 C 0.13 1.71 6.52 -85.33 -0.56 1.15 16 10 N -0.66 -8.64 5.41 -10.97 -0.06 -8.70 16 11 C 0.51 8.79 7.79 -10.99 -0.09 8.70 16 12 O -0.51 -10.74 12.71 5.54 0.07 -10.67 16 13 C -0.12 -2.14 5.64 -27.88 -0.16 -2.30 16 14 C 0.00 0.00 3.33 -27.88 -0.09 -0.09 16 15 C -0.53 -14.74 9.66 -34.44 -0.33 -15.07 16 16 H 0.07 2.13 7.99 -52.48 -0.42 1.71 16 17 C 0.07 2.06 5.47 -17.82 -0.10 1.97 16 18 N -0.90 -27.66 13.96 55.43 0.77 -26.89 16 19 Si 0.88 22.43 27.47 -169.99 -4.67 17.76 16 20 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 21 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 22 H -0.26 -6.64 6.54 56.52 0.37 -6.27 16 23 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 24 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.07 0.43 7.02 -51.93 -0.36 0.07 16 26 H 0.41 1.82 8.98 45.56 0.41 2.23 16 27 H 0.20 3.70 5.19 -52.64 -0.27 3.42 16 28 H 0.41 3.87 7.34 -40.82 -0.30 3.57 16 29 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 30 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 31 H 0.03 0.65 7.16 -51.93 -0.37 0.28 16 32 H 0.02 0.53 7.52 -51.93 -0.39 0.14 16 33 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 304.53 15.07 4.59 4.59 Total: -1.00 -35.81 304.53 -6.71 -42.52 By element: Atomic # 1 Polarization: 3.72 SS G_CDS: -2.57 Total: 1.16 kcal Atomic # 6 Polarization: -4.47 SS G_CDS: -1.50 Total: -5.97 kcal Atomic # 7 Polarization: -36.31 SS G_CDS: 0.71 Total: -35.59 kcal Atomic # 8 Polarization: -23.53 SS G_CDS: -0.82 Total: -24.35 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -4.67 Total: 17.76 kcal Atomic # 16 Polarization: 2.35 SS G_CDS: -2.46 Total: -0.11 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -35.81 -6.71 -42.52 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610589544.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.982 kcal (2) G-P(sol) polarization free energy of solvation -35.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds