Wall clock time and date at job start Tue Mar 31 2020 06:19:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 S 1.70592 * 124.51289 * 2 1 4 4 C 1.75807 * 91.65061 * 180.02562 * 3 2 1 5 5 C 1.46366 * 125.40840 * 179.97438 * 4 3 2 6 6 O 1.21633 * 120.00052 * 180.02562 * 5 4 3 7 7 O 1.34906 * 119.99727 * 0.02562 * 5 4 3 8 8 C 1.36776 * 109.18579 * 359.73781 * 4 3 2 9 9 C 1.34293 * 124.51712 * 180.02562 * 2 1 3 10 10 N 1.40691 * 122.52884 * 359.97438 * 9 2 1 11 11 C 1.34777 * 120.00004 * 186.56742 * 10 9 2 12 12 O 1.21303 * 119.99712 * 354.59915 * 11 10 9 13 13 C 1.50698 * 119.99838 * 174.60384 * 11 10 9 14 14 C 1.53003 * 109.47019 * 179.97438 * 13 11 10 15 15 C 1.50698 * 109.47399 * 180.02562 * 14 13 11 16 16 H 1.08003 * 119.99591 * 0.02562 * 15 14 13 17 17 C 1.37877 * 120.00166 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99932 * 180.02562 * 17 15 14 19 19 Si 1.86801 * 119.99904 * 0.02562 * 17 15 14 20 20 H 1.48496 * 109.47184 * 89.99916 * 19 17 15 21 21 H 1.48502 * 109.46929 * 209.99857 * 19 17 15 22 22 H 1.48496 * 109.47016 * 329.99639 * 19 17 15 23 23 H 1.09006 * 109.47079 * 269.97420 * 1 2 3 24 24 H 1.08995 * 109.47085 * 29.97627 * 1 2 3 25 25 H 1.08996 * 109.47004 * 149.97386 * 1 2 3 26 26 H 0.96704 * 113.99860 * 180.02562 * 7 5 4 27 27 H 1.07995 * 123.37754 * 180.23906 * 8 4 3 28 28 H 0.97005 * 120.00018 * 6.56049 * 10 9 2 29 29 H 1.08998 * 109.47657 * 299.99797 * 13 11 10 30 30 H 1.08998 * 109.47168 * 59.99964 * 13 11 10 31 31 H 1.08994 * 109.47403 * 300.00155 * 14 13 11 32 32 H 1.09003 * 109.47210 * 60.00045 * 14 13 11 33 33 H 0.96998 * 120.00092 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 16 2.4736 1.4057 0.0000 4 6 3.9504 0.4517 -0.0008 5 6 5.3100 0.9936 -0.0017 6 8 6.2649 0.2402 -0.0026 7 8 5.5040 2.3286 -0.0014 8 6 3.6270 -0.8773 0.0049 9 6 2.2680 -1.1065 -0.0005 10 7 1.7193 -2.4020 -0.0005 11 6 2.5243 -3.4748 0.1324 12 8 3.7285 -3.3305 0.1537 13 6 1.9283 -4.8535 0.2547 14 6 3.0508 -5.8840 0.3922 15 6 2.4549 -7.2628 0.5138 16 1 1.3827 -7.3913 0.4944 17 6 3.2784 -8.3603 0.6497 18 7 2.7583 -9.5636 0.7553 19 14 5.1328 -8.1379 0.6839 20 1 5.5817 -7.9384 2.0853 21 1 5.7867 -9.3470 0.1220 22 1 5.5041 -6.9516 -0.1285 23 1 -0.3633 -0.0005 1.0277 24 1 -0.3633 0.8902 -0.5134 25 1 -0.3633 -0.8897 -0.5142 26 1 6.4348 2.5908 -0.0025 27 1 4.3627 -1.6678 0.0094 28 1 0.7616 -2.5231 -0.0962 29 1 1.2865 -4.8953 1.1346 30 1 1.3393 -5.0749 -0.6354 31 1 3.6923 -5.8422 -0.4880 32 1 3.6401 -5.6628 1.2821 33 1 3.3376 -10.3356 0.8513 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001610589544.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:46 Heat of formation + Delta-G solvation = -125.215630 kcal Electronic energy + Delta-G solvation = -19158.574845 eV Core-core repulsion = 15888.845898 eV Total energy + Delta-G solvation = -3269.728947 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.76100 -41.11815 -38.88634 -37.17995 -35.59112 -35.05271 -33.29895 -32.91395 -28.99162 -27.81880 -25.19324 -24.13679 -22.58366 -21.67446 -20.19456 -19.62106 -19.27968 -18.37570 -18.18013 -17.00168 -16.94909 -16.69147 -16.26688 -16.07668 -15.29843 -15.23888 -14.93013 -14.69756 -14.42634 -14.36640 -13.62326 -13.43276 -13.24968 -12.93915 -12.92577 -12.74310 -12.26097 -12.00488 -11.98494 -11.86814 -11.79840 -11.66304 -11.40624 -10.78838 -10.68684 -9.74258 -8.90856 -8.32643 -6.34951 -0.81027 0.36294 0.72120 0.85941 1.31488 1.34394 1.48734 1.56225 1.88666 1.97094 2.22104 2.33414 3.03581 3.72661 3.77258 4.05446 4.19207 4.28826 4.46390 4.46759 4.73220 4.74292 4.90802 4.94816 5.00006 5.18102 5.33336 5.33836 5.42137 5.51305 5.59982 6.22004 6.42228 6.71696 6.75695 7.11482 7.30588 8.82859 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.022525 B = 0.004010 C = 0.003417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.755742 B = 6981.435126 C = 8192.613674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.229 4.229 3 S 0.336 5.664 4 C -0.297 4.297 5 C 0.559 3.441 6 O -0.545 6.545 7 O -0.489 6.489 8 C -0.079 4.079 9 C 0.092 3.908 10 N -0.642 5.642 11 C 0.514 3.486 12 O -0.560 6.560 13 C -0.111 4.111 14 C 0.002 3.998 15 C -0.526 4.526 16 H 0.055 0.945 17 C 0.017 3.983 18 N -0.942 5.942 19 Si 0.933 3.067 20 H -0.270 1.270 21 H -0.278 1.278 22 H -0.264 1.264 23 H 0.096 0.904 24 H 0.098 0.902 25 H 0.088 0.912 26 H 0.434 0.566 27 H 0.157 0.843 28 H 0.431 0.569 29 H 0.112 0.888 30 H 0.112 0.888 31 H 0.010 0.990 32 H 0.008 0.992 33 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.215 28.876 -2.157 29.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.353 4.353 3 S 0.605 5.395 4 C -0.415 4.415 5 C 0.403 3.597 6 O -0.438 6.438 7 O -0.303 6.303 8 C -0.115 4.115 9 C -0.013 4.013 10 N -0.290 5.290 11 C 0.303 3.697 12 O -0.439 6.439 13 C -0.150 4.150 14 C -0.036 4.036 15 C -0.564 4.564 16 H 0.074 0.926 17 C -0.181 4.181 18 N -0.582 5.582 19 Si 0.758 3.242 20 H -0.195 1.195 21 H -0.204 1.204 22 H -0.188 1.188 23 H 0.115 0.885 24 H 0.116 0.884 25 H 0.106 0.894 26 H 0.296 0.704 27 H 0.174 0.826 28 H 0.271 0.729 29 H 0.130 0.870 30 H 0.130 0.870 31 H 0.029 0.971 32 H 0.027 0.973 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.837 30.022 -2.109 30.657 hybrid contribution 1.700 -2.223 0.047 2.799 sum -4.137 27.799 -2.063 28.181 Atomic orbital electron populations 1.20551 0.83868 1.05301 1.04768 1.24478 1.03974 0.96743 1.10102 1.82561 0.88850 1.02460 1.65619 1.23438 0.97079 0.97849 1.23168 1.19373 0.87630 0.81160 0.71519 1.90982 1.43808 1.60849 1.48143 1.84934 1.38221 1.21536 1.85564 1.21494 0.97130 0.96250 0.96663 1.16495 0.91134 0.85999 1.07705 1.43306 1.11963 1.02133 1.71582 1.21582 0.86622 0.87600 0.73865 1.90528 1.17124 1.86122 1.50092 1.21512 0.99986 0.87811 1.05717 1.19257 0.94851 0.93059 0.96453 1.21406 0.94581 0.90957 1.49502 0.92646 1.25731 1.02985 0.94986 0.94406 1.70008 1.37140 0.99157 1.51943 0.85913 0.81151 0.77927 0.79215 1.19541 1.20387 1.18823 0.88535 0.88363 0.89366 0.70435 0.82612 0.72909 0.86992 0.86981 0.97142 0.97320 0.92377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.72 10.01 71.24 0.71 0.00 16 2 C -0.23 -3.88 6.29 24.79 0.16 -3.73 16 3 S 0.34 5.31 22.86 -56.49 -1.29 4.02 16 4 C -0.30 -7.73 6.45 24.04 0.16 -7.57 16 5 C 0.56 14.66 8.27 69.94 0.58 15.23 16 6 O -0.55 -19.01 17.57 19.40 0.34 -18.66 16 7 O -0.49 -7.90 13.40 -58.21 -0.78 -8.68 16 8 C -0.08 -2.52 8.89 21.83 0.19 -2.32 16 9 C 0.09 2.33 6.52 36.72 0.24 2.57 16 10 N -0.64 -15.85 5.41 -306.99 -1.66 -17.51 16 11 C 0.51 17.70 7.79 87.66 0.68 18.38 16 12 O -0.56 -24.52 12.71 -3.10 -0.04 -24.56 16 13 C -0.11 -3.93 5.64 29.85 0.17 -3.76 16 14 C 0.00 0.09 3.33 29.85 0.10 0.19 16 15 C -0.53 -29.85 9.66 25.60 0.25 -29.60 16 16 H 0.06 3.27 7.99 -2.91 -0.02 3.24 16 17 C 0.02 1.00 5.47 84.65 0.46 1.46 16 18 N -0.94 -58.67 13.96 21.45 0.30 -58.37 16 19 Si 0.93 47.16 27.47 68.60 1.88 49.04 16 20 H -0.27 -13.29 7.11 99.48 0.71 -12.59 16 21 H -0.28 -13.54 7.11 99.48 0.71 -12.83 16 22 H -0.26 -13.37 6.54 99.48 0.65 -12.72 16 23 H 0.10 0.61 8.14 -2.38 -0.02 0.59 16 24 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 25 H 0.09 0.58 7.02 -2.39 -0.02 0.56 16 26 H 0.43 3.07 8.98 -74.05 -0.66 2.40 16 27 H 0.16 6.36 5.19 -5.26 -0.03 6.34 16 28 H 0.43 6.87 7.34 -92.70 -0.68 6.19 16 29 H 0.11 3.51 8.14 -2.39 -0.02 3.49 16 30 H 0.11 3.49 8.14 -2.39 -0.02 3.47 16 31 H 0.01 0.53 7.16 -2.39 -0.02 0.51 16 32 H 0.01 0.43 7.52 -2.39 -0.02 0.41 16 33 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 Total: -1.00 -81.79 304.53 2.22 -79.57 By element: Atomic # 1 Polarization: 4.54 SS G_CDS: -0.23 Total: 4.31 kcal Atomic # 6 Polarization: -12.85 SS G_CDS: 3.70 Total: -9.16 kcal Atomic # 7 Polarization: -74.52 SS G_CDS: -1.36 Total: -75.88 kcal Atomic # 8 Polarization: -51.43 SS G_CDS: -0.48 Total: -51.91 kcal Atomic # 14 Polarization: 47.16 SS G_CDS: 1.88 Total: 49.04 kcal Atomic # 16 Polarization: 5.31 SS G_CDS: -1.29 Total: 4.02 kcal Total: -81.79 2.22 -79.57 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610589544.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.645 kcal (2) G-P(sol) polarization free energy of solvation -81.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds