Wall clock time and date at job start Tue Mar 31 2020 06:12:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00439 * 2 1 4 4 H 1.48499 * 109.47022 * 270.00274 * 3 2 1 5 5 H 1.48502 * 109.46769 * 29.99782 * 3 2 1 6 6 H 1.48495 * 109.47280 * 149.99957 * 3 2 1 7 7 C 1.37887 * 119.99907 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99631 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00079 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47055 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.47238 * 179.97438 * 10 9 7 12 12 O 1.21279 * 119.99507 * 0.02562 * 11 10 9 13 13 N 1.34774 * 120.00020 * 180.02562 * 11 10 9 14 14 C 1.46496 * 119.99544 * 180.02562 * 13 11 10 15 15 H 1.08997 * 109.48050 * 34.99853 * 14 13 11 16 16 C 1.50703 * 109.47347 * 274.99816 * 14 13 11 17 17 O 1.20828 * 119.99713 * 0.02562 * 16 14 13 18 18 O 1.34223 * 120.00576 * 180.02562 * 16 14 13 19 19 C 1.50705 * 109.46850 * 155.00384 * 14 13 11 20 20 C 1.33393 * 125.20072 * 219.99672 * 19 14 13 21 21 C 1.38422 * 114.91886 * 179.97438 * 20 19 14 22 22 C 1.33380 * 114.92333 * 0.02562 * 21 20 19 23 23 S 1.75879 * 125.20577 * 39.68919 * 19 14 13 24 24 H 0.96999 * 119.99682 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.47328 * 59.99861 * 9 7 2 26 26 H 1.09004 * 109.47043 * 299.99672 * 9 7 2 27 27 H 1.09001 * 109.46832 * 59.99966 * 10 9 7 28 28 H 1.09000 * 109.47611 * 300.00263 * 10 9 7 29 29 H 0.96994 * 119.99756 * 0.02562 * 13 11 10 30 30 H 0.96698 * 117.00525 * 179.97438 * 18 16 14 31 31 H 1.08001 * 122.54054 * 359.97438 * 20 19 14 32 32 H 1.08003 * 122.53604 * 180.02562 * 21 20 19 33 33 H 1.08002 * 125.20373 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 6 4.0214 -2.6367 -0.0001 11 6 5.5285 -2.6368 -0.0001 12 8 6.1349 -1.5865 0.0004 13 7 6.2023 -3.8040 -0.0008 14 6 7.6673 -3.8040 -0.0002 15 1 8.0305 -2.9626 0.5899 16 6 8.1702 -3.6791 -1.4154 17 8 7.3853 -3.5980 -2.3305 18 8 9.4899 -3.6580 -1.6594 19 6 8.1694 -5.0922 0.5994 20 6 9.2126 -5.2016 1.4234 21 6 9.4877 -6.4899 1.8483 22 6 8.6682 -7.4268 1.3690 23 16 7.4648 -6.6803 0.3259 24 1 -0.4849 0.8401 0.0004 25 1 3.8746 -0.6809 0.8905 26 1 3.8752 -0.6798 -0.8895 27 1 3.6584 -3.1503 -0.8903 28 1 3.6578 -3.1508 0.8896 29 1 5.7173 -4.6439 -0.0016 30 1 9.7644 -3.5769 -2.5830 31 1 9.7984 -4.3495 1.7354 32 1 10.3040 -6.7191 2.5173 33 1 8.7312 -8.4819 1.5911 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001610621567.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:04 Heat of formation + Delta-G solvation = -94.601134 kcal Electronic energy + Delta-G solvation = -19398.572594 eV Core-core repulsion = 16130.171191 eV Total energy + Delta-G solvation = -3268.401403 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.75798 -39.15770 -38.16477 -36.29267 -34.94720 -33.50163 -31.59190 -30.66536 -27.57894 -25.79085 -24.05809 -22.28874 -21.01400 -20.33776 -19.22523 -18.63944 -17.72504 -17.28008 -16.88760 -16.25800 -15.69388 -15.64368 -15.18392 -14.76072 -14.09022 -13.70490 -13.36339 -13.15730 -13.00436 -12.92506 -12.57054 -12.53673 -12.31083 -11.65564 -11.42712 -11.10381 -10.99904 -10.93104 -10.18918 -10.06016 -9.80794 -9.50326 -9.30635 -9.18131 -9.07378 -8.83950 -8.49440 -6.01702 -4.00447 0.52129 1.15706 1.57963 2.01099 2.32983 2.50104 3.05768 3.39403 3.45371 3.46696 3.56149 4.10552 4.52188 4.69559 4.89011 5.01524 5.07850 5.20245 5.33769 5.40702 5.68306 5.85317 6.02572 6.04393 6.08594 6.22638 6.30894 6.65875 7.35906 7.42942 7.49056 7.71329 7.79078 8.40868 8.54652 9.01176 9.61163 11.11109 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.026539 B = 0.003901 C = 0.003666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.783482 B = 7175.007654 C = 7635.083736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.069 3.931 3 Si 0.877 3.123 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.261 1.261 7 C -0.525 4.525 8 H 0.073 0.927 9 C 0.001 3.999 10 C -0.120 4.120 11 C 0.521 3.479 12 O -0.532 6.532 13 N -0.721 5.721 14 C 0.234 3.766 15 H 0.141 0.859 16 C 0.468 3.532 17 O -0.492 6.492 18 O -0.512 6.512 19 C -0.202 4.202 20 C -0.100 4.100 21 C -0.136 4.136 22 C -0.202 4.202 23 S 0.120 5.880 24 H 0.263 0.737 25 H 0.024 0.976 26 H 0.020 0.980 27 H 0.091 0.909 28 H 0.090 0.910 29 H 0.405 0.595 30 H 0.410 0.590 31 H 0.148 0.852 32 H 0.145 0.855 33 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.861 -16.268 2.342 27.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.132 4.132 3 Si 0.704 3.296 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.185 1.185 7 C -0.563 4.563 8 H 0.092 0.908 9 C -0.036 4.036 10 C -0.159 4.159 11 C 0.311 3.689 12 O -0.407 6.407 13 N -0.377 5.377 14 C 0.124 3.876 15 H 0.158 0.842 16 C 0.307 3.693 17 O -0.378 6.378 18 O -0.323 6.323 19 C -0.319 4.319 20 C -0.131 4.131 21 C -0.167 4.167 22 C -0.338 4.338 23 S 0.383 5.617 24 H 0.073 0.927 25 H 0.043 0.957 26 H 0.038 0.962 27 H 0.109 0.891 28 H 0.109 0.891 29 H 0.241 0.759 30 H 0.269 0.731 31 H 0.165 0.835 32 H 0.163 0.837 33 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 20.542 -15.924 1.649 26.043 hybrid contribution 1.558 0.949 0.093 1.827 sum 22.100 -14.975 1.742 26.752 Atomic orbital electron populations 1.69911 1.06283 1.26964 1.51038 1.24964 0.94706 0.99204 0.94315 0.86799 0.80593 0.83413 0.78769 1.20234 1.21425 1.18550 1.21095 0.89159 0.94630 1.51382 0.90842 1.19389 0.96550 0.89948 0.97761 1.21698 0.86794 1.03670 1.03781 1.21729 0.91924 0.82164 0.73092 1.90661 1.70653 1.31203 1.48141 1.46107 1.03339 1.10517 1.77743 1.18424 0.83269 0.96187 0.89687 0.84189 1.23863 0.80377 0.72387 0.92713 1.90764 1.56856 1.44083 1.46053 1.84503 1.25866 1.85223 1.36686 1.24062 1.03622 0.96916 1.07333 1.20158 0.97008 0.98737 0.97219 1.20180 1.01812 0.91755 1.02931 1.25756 1.00185 1.03807 1.04084 1.84447 1.32034 0.97754 1.47420 0.92711 0.95717 0.96170 0.89113 0.89140 0.75921 0.73139 0.83458 0.83700 0.81442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.18 13.96 55.43 0.77 -27.41 16 2 C 0.07 2.07 5.47 -17.82 -0.10 1.98 16 3 Si 0.88 22.78 27.47 -169.99 -4.67 18.11 16 4 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 5 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 6 H -0.26 -6.72 6.54 56.52 0.37 -6.35 16 7 C -0.52 -15.15 9.66 -34.44 -0.33 -15.48 16 8 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 9 C 0.00 0.04 3.33 -27.89 -0.09 -0.06 16 10 C -0.12 -2.37 5.64 -27.88 -0.16 -2.53 16 11 C 0.52 9.73 7.66 -10.98 -0.08 9.65 16 12 O -0.53 -11.74 15.64 5.56 0.09 -11.65 16 13 N -0.72 -10.37 4.59 -56.07 -0.26 -10.63 16 14 C 0.23 2.97 2.91 -70.23 -0.20 2.77 16 15 H 0.14 1.78 7.56 -51.93 -0.39 1.39 16 16 C 0.47 6.38 7.65 36.01 0.28 6.65 16 17 O -0.49 -8.44 17.08 -18.75 -0.32 -8.76 16 18 O -0.51 -5.14 13.34 -39.24 -0.52 -5.67 16 19 C -0.20 -2.04 5.37 -36.00 -0.19 -2.23 16 20 C -0.10 -0.84 10.04 -41.21 -0.41 -1.26 16 21 C -0.14 -0.97 10.18 -41.21 -0.42 -1.39 16 22 C -0.20 -1.44 11.23 29.03 0.33 -1.11 16 23 S 0.12 1.06 22.30 -107.50 -2.40 -1.33 16 24 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 25 H 0.02 0.64 7.16 -51.93 -0.37 0.27 16 26 H 0.02 0.53 7.53 -51.93 -0.39 0.14 16 27 H 0.09 1.70 8.14 -51.93 -0.42 1.28 16 28 H 0.09 1.61 8.14 -51.93 -0.42 1.18 16 29 H 0.40 4.92 7.67 -40.82 -0.31 4.61 16 30 H 0.41 2.45 9.10 45.56 0.41 2.86 16 31 H 0.15 1.02 8.06 -52.49 -0.42 0.60 16 32 H 0.15 0.70 8.06 -52.48 -0.42 0.28 16 33 H 0.17 0.78 8.06 -52.49 -0.42 0.36 16 LS Contribution 310.03 15.07 4.67 4.67 Total: -1.00 -36.74 310.03 -6.78 -43.53 By element: Atomic # 1 Polarization: 4.90 SS G_CDS: -2.75 Total: 2.15 kcal Atomic # 6 Polarization: -1.62 SS G_CDS: -1.39 Total: -3.01 kcal Atomic # 7 Polarization: -38.55 SS G_CDS: 0.52 Total: -38.03 kcal Atomic # 8 Polarization: -25.33 SS G_CDS: -0.76 Total: -26.08 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -4.67 Total: 18.11 kcal Atomic # 16 Polarization: 1.06 SS G_CDS: -2.40 Total: -1.33 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -36.74 -6.78 -43.53 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610621567.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.076 kcal (2) G-P(sol) polarization free energy of solvation -36.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds