Wall clock time and date at job start Tue Mar 31 2020 06:12:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 119.99978 * 2 1 4 4 H 1.48497 * 109.47377 * 270.00023 * 3 2 1 5 5 H 1.48498 * 109.47299 * 30.00297 * 3 2 1 6 6 H 1.48504 * 109.46675 * 150.00094 * 3 2 1 7 7 C 1.37877 * 119.99963 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00288 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99794 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.47264 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47352 * 180.02562 * 10 9 7 12 12 O 1.21276 * 119.99715 * 359.97438 * 11 10 9 13 13 N 1.34773 * 119.99837 * 180.02562 * 11 10 9 14 14 C 1.46496 * 119.99697 * 180.02562 * 13 11 10 15 15 H 1.09000 * 109.47574 * 325.00033 * 14 13 11 16 16 C 1.50699 * 109.47248 * 84.99833 * 14 13 11 17 17 O 1.20827 * 120.00172 * 359.97438 * 16 14 13 18 18 O 1.34233 * 120.00015 * 179.97438 * 16 14 13 19 19 C 1.50706 * 109.47106 * 204.99526 * 14 13 11 20 20 C 1.33380 * 125.20244 * 139.71805 * 19 14 13 21 21 C 1.38431 * 114.92134 * 179.86269 * 20 19 14 22 22 C 1.33389 * 114.91667 * 0.43170 * 21 20 19 23 23 S 1.75879 * 109.59378 * 359.76812 * 22 21 20 24 24 H 0.97000 * 119.99403 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.47262 * 60.00495 * 9 7 2 26 26 H 1.08995 * 109.47586 * 300.00782 * 9 7 2 27 27 H 1.09002 * 109.46947 * 60.00358 * 10 9 7 28 28 H 1.08996 * 109.46522 * 300.00500 * 10 9 7 29 29 H 0.97006 * 120.00168 * 359.97438 * 13 11 10 30 30 H 0.96700 * 116.99741 * 179.97438 * 18 16 14 31 31 H 1.08008 * 122.54080 * 0.02562 * 20 19 14 32 32 H 1.08004 * 122.53857 * 180.19941 * 21 20 19 33 33 H 1.07999 * 125.19851 * 179.75216 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4916 -4.9672 -0.0012 12 8 0.2789 -4.9671 -0.0011 13 7 2.1655 -6.1344 -0.0008 14 6 1.4330 -7.4030 -0.0019 15 1 0.5216 -7.2970 0.5865 16 6 1.0761 -7.7757 -1.4178 17 8 1.3999 -7.0553 -2.3321 18 8 0.3983 -8.9081 -1.6633 19 6 2.2963 -8.4822 0.5991 20 6 1.8689 -9.4373 1.4262 21 6 2.8454 -10.3227 1.8491 22 6 4.0675 -10.0811 1.3724 23 16 4.0232 -8.6703 0.3232 24 1 -0.4849 0.8401 0.0004 25 1 0.6240 -2.5567 -0.8904 26 1 0.6246 -2.5570 0.8895 27 1 2.8718 -3.6044 0.8895 28 1 2.8718 -3.6043 -0.8905 29 1 3.1356 -6.1344 -0.0004 30 1 0.1919 -9.1046 -2.5873 31 1 0.8384 -9.5156 1.7401 32 1 2.6343 -11.1445 2.5174 33 1 4.9494 -10.6628 1.5967 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001610621569.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:08 Heat of formation + Delta-G solvation = -97.441490 kcal Electronic energy + Delta-G solvation = -19332.971393 eV Core-core repulsion = 16064.446823 eV Total energy + Delta-G solvation = -3268.524570 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.67489 -39.03304 -38.11165 -36.21755 -34.84356 -33.46071 -31.44005 -30.41234 -27.42117 -25.48013 -24.00839 -22.40097 -21.09610 -20.37479 -19.14700 -18.56992 -17.60718 -17.12293 -16.72643 -16.04858 -15.60597 -15.47352 -15.10685 -14.62158 -14.39942 -13.62989 -13.27223 -13.10122 -12.94809 -12.86658 -12.39653 -12.18225 -12.15709 -11.58773 -11.17049 -11.06457 -10.93187 -10.87631 -10.58879 -9.95772 -9.70944 -9.39455 -9.20031 -9.09143 -8.99425 -8.80033 -8.30542 -5.94569 -3.98883 0.56493 1.19897 1.61979 2.08066 2.37728 2.58958 3.18921 3.35268 3.41037 3.43632 3.56075 4.16954 4.49120 4.73028 4.97460 5.07519 5.13810 5.24633 5.40553 5.55345 5.73110 5.89466 6.07369 6.20241 6.23222 6.33414 6.37646 6.85908 7.61843 7.75666 7.78442 7.86634 8.07940 8.37988 8.59978 9.09032 9.64556 11.16452 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.026704 B = 0.003652 C = 0.003424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.294946 B = 7665.230839 C = 8175.020674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.894 3.106 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.527 4.527 8 H 0.057 0.943 9 C 0.037 3.963 10 C -0.127 4.127 11 C 0.521 3.479 12 O -0.526 6.526 13 N -0.723 5.723 14 C 0.234 3.766 15 H 0.141 0.859 16 C 0.468 3.532 17 O -0.492 6.492 18 O -0.512 6.512 19 C -0.199 4.199 20 C -0.101 4.101 21 C -0.136 4.136 22 C -0.204 4.204 23 S 0.118 5.882 24 H 0.261 0.739 25 H 0.024 0.976 26 H 0.025 0.975 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.403 0.597 30 H 0.409 0.591 31 H 0.148 0.852 32 H 0.145 0.855 33 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.561 -24.089 2.308 25.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.565 4.565 8 H 0.075 0.925 9 C -0.001 4.001 10 C -0.167 4.167 11 C 0.310 3.690 12 O -0.400 6.400 13 N -0.379 5.379 14 C 0.124 3.876 15 H 0.158 0.842 16 C 0.307 3.693 17 O -0.377 6.377 18 O -0.323 6.323 19 C -0.317 4.317 20 C -0.132 4.132 21 C -0.166 4.166 22 C -0.340 4.340 23 S 0.381 5.619 24 H 0.070 0.930 25 H 0.043 0.957 26 H 0.043 0.957 27 H 0.102 0.898 28 H 0.102 0.898 29 H 0.239 0.761 30 H 0.268 0.732 31 H 0.166 0.834 32 H 0.163 0.837 33 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 7.781 -22.853 1.612 24.195 hybrid contribution -0.250 -0.097 0.115 0.292 sum 7.531 -22.950 1.727 24.216 Atomic orbital electron populations 1.70002 1.06064 1.26583 1.50192 1.25023 0.94829 0.99237 0.95283 0.86578 0.79761 0.83456 0.78074 1.20674 1.21235 1.19859 1.21205 0.92970 0.90922 1.51413 0.92519 1.18922 0.93154 0.89276 0.98729 1.21899 1.00866 0.91050 1.02911 1.21754 0.88731 0.85306 0.73191 1.90677 1.14372 1.87287 1.47646 1.46168 1.10084 1.03643 1.78031 1.18425 0.96894 0.82677 0.89616 0.84187 1.23884 0.74546 0.78169 0.92750 1.90761 1.50311 1.50528 1.46141 1.84509 1.69537 1.41666 1.36609 1.24074 0.97623 1.02866 1.07111 1.20165 1.01597 0.94183 0.97280 1.20184 0.91897 1.01591 1.02947 1.25743 1.02141 1.01901 1.04171 1.84423 1.03740 1.26609 1.47094 0.92954 0.95714 0.95703 0.89806 0.89750 0.76117 0.73192 0.83428 0.83723 0.81490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.64 13.29 55.43 0.74 -26.91 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.53 -15.09 9.11 -34.44 -0.31 -15.41 16 8 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.04 1.00 4.26 -27.88 -0.12 0.88 16 10 C -0.13 -2.65 5.64 -27.88 -0.16 -2.81 16 11 C 0.52 10.31 7.66 -10.99 -0.08 10.23 16 12 O -0.53 -12.41 15.64 5.56 0.09 -12.33 16 13 N -0.72 -10.95 4.59 -56.07 -0.26 -11.21 16 14 C 0.23 3.14 2.91 -70.23 -0.20 2.93 16 15 H 0.14 1.90 7.56 -51.93 -0.39 1.51 16 16 C 0.47 6.70 7.65 36.01 0.28 6.97 16 17 O -0.49 -8.79 17.08 -18.75 -0.32 -9.11 16 18 O -0.51 -5.46 13.34 -39.27 -0.52 -5.98 16 19 C -0.20 -2.12 5.37 -36.00 -0.19 -2.31 16 20 C -0.10 -0.90 10.04 -41.21 -0.41 -1.31 16 21 C -0.14 -1.02 10.18 -41.20 -0.42 -1.44 16 22 C -0.20 -1.51 11.23 29.04 0.33 -1.19 16 23 S 0.12 1.09 22.31 -107.50 -2.40 -1.31 16 24 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 25 H 0.02 0.74 8.10 -51.93 -0.42 0.32 16 26 H 0.02 0.73 8.10 -51.93 -0.42 0.31 16 27 H 0.08 1.55 8.14 -51.93 -0.42 1.12 16 28 H 0.08 1.64 8.14 -51.93 -0.42 1.22 16 29 H 0.40 5.16 7.68 -40.82 -0.31 4.84 16 30 H 0.41 2.67 9.10 45.56 0.41 3.09 16 31 H 0.15 1.10 8.06 -52.48 -0.42 0.67 16 32 H 0.15 0.74 8.06 -52.48 -0.42 0.32 16 33 H 0.17 0.82 8.06 -52.49 -0.42 0.40 16 LS Contribution 313.65 15.07 4.73 4.73 Total: -1.00 -36.77 313.65 -7.16 -43.93 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: -2.79 Total: 3.21 kcal Atomic # 6 Polarization: -0.44 SS G_CDS: -1.40 Total: -1.84 kcal Atomic # 7 Polarization: -38.60 SS G_CDS: 0.48 Total: -38.12 kcal Atomic # 8 Polarization: -26.66 SS G_CDS: -0.76 Total: -27.42 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Atomic # 16 Polarization: 1.09 SS G_CDS: -2.40 Total: -1.31 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -36.77 -7.16 -43.93 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610621569.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.516 kcal (2) G-P(sol) polarization free energy of solvation -36.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds