Wall clock time and date at job start Tue Mar 31 2020 06:08:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31385 * 1 3 3 Si 1.86791 * 120.00202 * 2 1 4 4 H 1.48498 * 109.47240 * 269.99981 * 3 2 1 5 5 H 1.48500 * 109.47402 * 29.99840 * 3 2 1 6 6 H 1.48502 * 109.47564 * 149.99923 * 3 2 1 7 7 C 1.39025 * 119.99874 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00280 * 171.11064 * 7 2 1 9 9 N 1.36902 * 119.99758 * 351.10740 * 7 2 1 10 10 C 1.46500 * 120.00320 * 310.62031 * 9 7 2 11 11 C 1.50695 * 109.47596 * 264.45428 * 10 9 7 12 12 O 1.20831 * 119.99858 * 0.02562 * 11 10 9 13 13 O 1.34234 * 120.00452 * 179.97438 * 11 10 9 14 14 C 1.34778 * 120.00217 * 130.62402 * 9 7 2 15 15 O 1.21626 * 120.00386 * 182.68663 * 14 9 7 16 16 C 1.47435 * 119.99737 * 2.69073 * 14 9 7 17 17 C 1.39779 * 120.18382 * 307.93846 * 16 14 9 18 18 C 1.37971 * 119.87533 * 179.97438 * 17 16 14 19 19 F 1.35099 * 119.87292 * 179.97438 * 18 17 16 20 20 C 1.38741 * 120.25157 * 359.97438 * 18 17 16 21 21 C 1.38082 * 120.38006 * 359.74268 * 20 18 17 22 22 C 1.38656 * 120.11290 * 0.51534 * 21 20 18 23 23 O 1.35711 * 120.12551 * 179.76831 * 22 21 20 24 24 H 0.96998 * 119.99805 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47063 * 24.45683 * 10 9 7 26 26 H 1.09005 * 109.47174 * 144.45142 * 10 9 7 27 27 H 0.96698 * 117.00102 * 180.02562 * 13 11 10 28 28 H 1.07998 * 120.06206 * 359.95320 * 17 16 14 29 29 H 1.08000 * 119.81142 * 180.02562 * 20 18 17 30 30 H 1.07998 * 119.94034 * 180.27891 * 21 20 18 31 31 H 0.96700 * 113.99382 * 269.72278 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3138 0.0000 0.0000 3 14 2.2479 1.6176 0.0000 4 1 2.4954 2.0463 -1.4000 5 1 1.4454 2.6526 0.7000 6 1 3.5454 1.4401 0.7000 7 6 2.0089 -1.2040 0.0005 8 1 3.0792 -1.2098 -0.1440 9 7 1.3367 -2.3824 0.1843 10 6 0.3949 -2.5225 1.2977 11 6 1.0922 -3.1679 2.4674 12 8 2.2566 -3.4785 2.3802 13 8 0.4201 -3.3968 3.6066 14 6 1.5413 -3.4136 -0.6590 15 8 0.9083 -4.4435 -0.5252 16 6 2.5326 -3.2933 -1.7436 17 6 2.4877 -2.2046 -2.6192 18 6 3.4189 -2.0981 -3.6317 19 9 3.3751 -1.0461 -4.4782 20 6 4.4000 -3.0672 -3.7838 21 6 4.4577 -4.1439 -2.9213 22 6 3.5264 -4.2692 -1.9017 23 8 3.5800 -5.3298 -1.0567 24 1 -0.4850 0.8400 0.0004 25 1 0.0295 -1.5383 1.5906 26 1 -0.4449 -3.1442 0.9872 27 1 0.9098 -3.8126 4.3293 28 1 1.7253 -1.4485 -2.5035 29 1 5.1256 -2.9765 -4.5786 30 1 5.2272 -4.8918 -3.0434 31 1 3.0626 -6.0924 -1.3496 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001610622430.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:40 Heat of formation + Delta-G solvation = -178.315085 kcal Electronic energy + Delta-G solvation = -22648.932850 eV Core-core repulsion = 18810.688162 eV Total energy + Delta-G solvation = -3838.244688 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.073 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.47982 -39.94235 -39.26519 -37.74346 -36.05194 -35.42847 -34.79072 -31.77393 -31.09323 -28.94221 -27.81823 -25.09646 -23.39256 -22.22289 -21.11867 -19.58602 -18.19674 -17.82120 -17.41008 -16.56123 -16.34938 -15.85831 -15.41957 -15.29179 -14.94063 -14.85146 -14.60672 -14.36831 -13.70170 -13.38671 -13.19408 -12.95188 -12.50094 -12.13319 -11.69905 -11.50187 -11.41167 -11.35946 -11.14618 -10.99322 -10.71253 -10.47170 -10.25191 -9.82708 -9.36306 -8.89545 -8.61029 -8.09210 -7.70884 -6.59248 -4.42395 1.29061 1.51822 3.03721 3.05676 3.14154 3.18487 3.35489 3.64741 3.98532 4.16935 4.43637 4.59642 4.68545 4.84956 5.16193 5.27538 5.64013 5.74209 6.09333 6.10702 6.23438 6.26892 6.44674 6.50170 6.60509 6.76028 7.12843 7.14104 7.28552 7.64625 8.03993 8.16759 8.64687 8.83954 9.13752 9.61015 10.45497 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.013215 B = 0.009262 C = 0.006096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2118.330985 B = 3022.362743 C = 4592.039761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.049 3.951 3 Si 0.915 3.085 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.340 4.340 8 H 0.088 0.912 9 N -0.416 5.416 10 C 0.131 3.869 11 C 0.458 3.542 12 O -0.510 6.510 13 O -0.527 6.527 14 C 0.543 3.457 15 O -0.587 6.587 16 C -0.083 4.083 17 C -0.075 4.075 18 C 0.070 3.930 19 F -0.143 7.143 20 C -0.134 4.134 21 C -0.134 4.134 22 C 0.131 3.869 23 O -0.485 6.485 24 H 0.275 0.725 25 H 0.137 0.863 26 H 0.101 0.899 27 H 0.395 0.605 28 H 0.156 0.844 29 H 0.134 0.866 30 H 0.136 0.864 31 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.525 -3.320 -2.978 5.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.158 4.158 3 Si 0.741 3.259 4 H -0.195 1.195 5 H -0.204 1.204 6 H -0.190 1.190 7 C -0.468 4.468 8 H 0.106 0.894 9 N -0.134 5.134 10 C 0.006 3.994 11 C 0.299 3.701 12 O -0.396 6.396 13 O -0.338 6.338 14 C 0.332 3.668 15 O -0.471 6.471 16 C -0.086 4.086 17 C -0.094 4.094 18 C 0.051 3.949 19 F -0.121 7.121 20 C -0.153 4.153 21 C -0.153 4.153 22 C 0.085 3.915 23 O -0.295 6.295 24 H 0.086 0.914 25 H 0.155 0.845 26 H 0.119 0.881 27 H 0.252 0.748 28 H 0.173 0.827 29 H 0.152 0.848 30 H 0.154 0.846 31 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 3.494 -3.162 -2.928 5.548 hybrid contribution 0.528 0.596 0.254 0.836 sum 4.022 -2.566 -2.674 5.469 Atomic orbital electron populations 1.69800 1.06076 1.28531 1.45562 1.25595 0.95411 1.00062 0.94735 0.86084 0.79832 0.80877 0.79140 1.19548 1.20406 1.19048 1.19404 0.92492 0.82362 1.52501 0.89393 1.42761 1.38538 1.11749 1.20377 1.20898 0.92315 1.03132 0.83055 1.25042 0.86336 0.75226 0.83520 1.90662 1.18190 1.48366 1.82396 1.84601 1.48492 1.75767 1.24964 1.18020 0.82989 0.84159 0.81651 1.90636 1.51108 1.30603 1.74787 1.20137 0.96323 0.95146 0.97001 1.21405 0.98687 0.97359 0.91938 1.17561 0.98786 0.86806 0.91763 1.91472 1.96225 1.55150 1.69292 1.20955 0.98892 0.94357 1.01067 1.21039 1.00318 0.99387 0.94508 1.18455 0.93587 0.89440 0.90045 1.84751 1.72837 1.24509 1.47452 0.91419 0.84524 0.88109 0.74787 0.82668 0.84826 0.84634 0.75182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -21.12 11.69 55.50 0.65 -20.47 16 2 C 0.05 1.17 5.11 -17.45 -0.09 1.09 16 3 Si 0.92 19.01 29.56 -169.99 -5.03 13.98 16 4 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 5 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 6 H -0.27 -5.60 7.11 56.52 0.40 -5.19 16 7 C -0.34 -8.45 6.59 -15.00 -0.10 -8.55 16 8 H 0.09 2.25 7.53 -52.49 -0.40 1.85 16 9 N -0.42 -10.35 1.98 -117.32 -0.23 -10.58 16 10 C 0.13 3.03 5.45 -5.20 -0.03 3.00 16 11 C 0.46 10.04 8.36 36.00 0.30 10.34 16 12 O -0.51 -12.74 17.06 -18.75 -0.32 -13.06 16 13 O -0.53 -9.11 13.42 -39.27 -0.53 -9.64 16 14 C 0.54 13.36 6.65 -12.51 -0.08 13.28 16 15 O -0.59 -15.13 16.32 -0.56 -0.01 -15.14 16 16 C -0.08 -1.77 5.02 -104.85 -0.53 -2.30 16 17 C -0.07 -1.50 8.29 -39.10 -0.32 -1.82 16 18 C 0.07 1.22 7.28 -39.49 -0.29 0.94 16 19 F -0.14 -2.48 17.26 2.25 0.04 -2.44 16 20 C -0.13 -1.97 10.01 -39.45 -0.39 -2.37 16 21 C -0.13 -2.03 9.97 -39.48 -0.39 -2.42 16 22 C 0.13 2.46 6.70 -38.70 -0.26 2.20 16 23 O -0.49 -9.02 12.64 -24.65 -0.31 -9.33 16 24 H 0.28 6.36 8.31 -40.82 -0.34 6.02 16 25 H 0.14 3.18 6.10 -51.93 -0.32 2.87 16 26 H 0.10 2.27 7.56 -51.93 -0.39 1.88 16 27 H 0.40 4.89 9.10 45.56 0.41 5.30 16 28 H 0.16 3.34 7.26 -52.49 -0.38 2.96 16 29 H 0.13 1.54 8.06 -52.49 -0.42 1.12 16 30 H 0.14 1.63 8.06 -52.49 -0.42 1.20 16 31 H 0.39 5.63 9.06 45.56 0.41 6.04 16 LS Contribution 291.74 15.07 4.40 4.40 Total: -1.00 -31.16 291.74 -4.16 -35.32 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: -0.64 Total: 13.57 kcal Atomic # 6 Polarization: 15.57 SS G_CDS: -2.19 Total: 13.39 kcal Atomic # 7 Polarization: -31.46 SS G_CDS: 0.42 Total: -31.05 kcal Atomic # 8 Polarization: -46.00 SS G_CDS: -1.17 Total: -47.17 kcal Atomic # 9 Polarization: -2.48 SS G_CDS: 0.04 Total: -2.44 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -5.03 Total: 13.98 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -31.16 -4.16 -35.32 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610622430.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -142.991 kcal (2) G-P(sol) polarization free energy of solvation -31.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds