Wall clock time and date at job start Tue Mar 31 2020 05:40:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.38349 * 127.15068 * 2 1 4 4 C 1.39776 * 126.56574 * 0.02562 * 3 2 1 5 5 H 1.07999 * 119.99778 * 5.78312 * 4 3 2 6 6 C 1.40085 * 120.00068 * 185.77562 * 4 3 2 7 7 N 1.30808 * 119.99942 * 184.12744 * 6 4 3 8 8 Si 1.86799 * 119.99669 * 4.13543 * 6 4 3 9 9 H 1.48509 * 109.46950 * 179.97438 * 8 6 4 10 10 H 1.48495 * 109.47355 * 299.99259 * 8 6 4 11 11 H 1.48501 * 109.47215 * 59.99928 * 8 6 4 12 12 N 1.33098 * 106.87112 * 179.74281 * 3 2 1 13 13 N 1.28516 * 109.74302 * 0.24028 * 12 3 2 14 14 C 1.32388 * 110.20609 * 0.02562 * 13 12 3 15 15 S 1.76202 * 126.26021 * 180.02562 * 14 13 12 16 16 C 1.81001 * 99.99784 * 359.97438 * 15 14 13 17 17 C 1.50698 * 109.47052 * 179.97438 * 16 15 14 18 18 N 1.29422 * 125.69745 * 90.01981 * 17 16 15 19 19 N 1.26397 * 116.47778 * 179.97438 * 18 17 16 20 20 C 1.29421 * 116.47467 * 0.02562 * 19 18 17 21 21 S 1.71219 * 125.69776 * 269.71348 * 17 16 15 22 22 H 1.08991 * 109.47295 * 89.99934 * 1 2 3 23 23 H 1.08996 * 109.46934 * 210.00007 * 1 2 3 24 24 H 1.09000 * 109.46691 * 329.99366 * 1 2 3 25 25 H 0.97000 * 120.00392 * 354.84969 * 7 6 4 26 26 H 1.09003 * 109.47327 * 299.99328 * 16 15 14 27 27 H 1.08993 * 109.47535 * 59.99722 * 16 15 14 28 28 H 1.07998 * 125.69471 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3006 1.1027 0.0000 4 6 1.9086 2.4444 0.0005 5 1 0.8640 2.7018 0.0952 6 6 2.8708 3.4552 -0.1217 7 7 2.5140 4.7111 -0.0402 8 14 4.6632 3.0096 -0.4011 9 1 5.4729 4.2509 -0.4958 10 1 5.1511 2.1853 0.7337 11 1 4.7906 2.2385 -1.6638 12 7 3.5490 0.6414 0.0057 13 7 3.5370 -0.6437 0.0041 14 6 2.2904 -1.0893 -0.0033 15 16 1.7873 -2.7780 -0.0075 16 6 3.4059 -3.5881 0.0002 17 6 3.2192 -5.0835 -0.0015 18 7 3.1312 -5.8323 -1.0534 19 7 2.9761 -7.0705 -0.8523 20 6 2.9218 -7.4520 0.3832 21 16 3.0953 -6.0764 1.3878 22 1 -0.3633 0.0000 -1.0276 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3633 0.8899 0.5139 25 1 1.5753 4.9451 0.0298 26 1 3.9654 -3.2905 -0.8867 27 1 3.9562 -3.2921 0.8932 28 1 2.7938 -8.4689 0.7236 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001652820404.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:17 Heat of formation + Delta-G solvation = 102.886438 kcal Electronic energy + Delta-G solvation = -16704.119817 eV Core-core repulsion = 13815.787396 eV Total energy + Delta-G solvation = -2888.332420 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 283.026 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.87699 -42.38602 -35.95249 -35.44914 -34.34115 -32.03780 -30.29299 -28.45648 -27.35534 -26.38491 -23.38476 -22.32995 -21.71221 -20.29074 -20.20702 -18.51988 -17.35019 -17.06201 -16.93377 -16.68047 -15.85325 -15.60745 -15.31343 -14.98073 -14.63560 -14.24296 -14.21564 -14.05640 -13.56958 -13.11896 -12.88469 -12.23701 -11.89464 -11.58397 -11.54415 -11.44529 -11.38974 -10.99124 -10.94327 -10.73225 -10.58603 -10.38223 -9.49309 -8.80159 -6.87842 -0.84018 -0.16724 0.27166 0.29986 0.90692 0.95954 1.53942 1.56710 1.59107 1.94204 2.11269 2.19215 2.41245 2.76636 3.03922 3.64554 3.69403 3.92345 4.19440 4.32847 4.37165 4.44524 4.49636 4.55232 4.67510 5.20636 5.36688 5.65720 5.99761 6.37788 6.55036 7.42609 7.91955 8.11891 Molecular weight = 283.03amu Principal moments of inertia in cm(-1) A = 0.038269 B = 0.004070 C = 0.003834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.486632 B = 6877.569000 C = 7302.066362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.513 5.513 3 C 0.327 3.673 4 C -0.506 4.506 5 H 0.085 0.915 6 C 0.042 3.958 7 N -0.821 5.821 8 Si 1.144 2.856 9 H -0.298 1.298 10 H -0.274 1.274 11 H -0.296 1.296 12 N -0.445 5.445 13 N -0.304 5.304 14 C 0.077 3.923 15 S 0.035 5.965 16 C -0.021 4.021 17 C -0.031 4.031 18 N -0.279 5.279 19 N -0.297 5.297 20 C -0.035 4.035 21 S 0.272 5.728 22 H 0.077 0.923 23 H 0.100 0.900 24 H 0.085 0.915 25 H 0.287 0.713 26 H 0.112 0.888 27 H 0.128 0.872 28 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.723 -20.533 5.660 21.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.213 5.213 3 C 0.081 3.919 4 C -0.547 4.547 5 H 0.103 0.897 6 C -0.178 4.178 7 N -0.446 5.446 8 Si 0.973 3.027 9 H -0.227 1.227 10 H -0.200 1.200 11 H -0.223 1.223 12 N -0.294 5.294 13 N -0.147 5.147 14 C -0.299 4.299 15 S 0.260 5.740 16 C -0.174 4.174 17 C -0.311 4.311 18 N -0.120 5.120 19 N -0.133 5.133 20 C -0.333 4.333 21 S 0.513 5.487 22 H 0.096 0.904 23 H 0.118 0.882 24 H 0.104 0.896 25 H 0.098 0.902 26 H 0.130 0.870 27 H 0.146 0.854 28 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges -1.881 -20.431 5.189 21.163 hybrid contribution -2.002 0.426 -0.167 2.053 sum -3.883 -20.005 5.021 20.988 Atomic orbital electron populations 1.21931 0.74602 1.04775 1.03771 1.46160 1.08387 1.04007 1.62764 1.21791 0.85645 0.89896 0.94598 1.19407 0.97488 0.87525 1.50271 0.89715 1.27759 1.09705 0.91514 0.88866 1.70665 1.21924 1.18462 1.33530 0.82229 0.69683 0.71870 0.78944 1.22697 1.20050 1.22335 1.73884 1.17028 1.02104 1.36428 1.74185 1.16888 1.04993 1.18635 1.26340 0.90462 0.95576 1.17481 1.84645 1.08314 0.86280 1.94745 1.21672 0.98760 0.87373 1.09565 1.28284 1.06661 1.01716 0.94432 1.71482 1.14256 0.98064 1.28153 1.71468 1.15928 1.06021 1.19921 1.31294 1.01818 1.08578 0.91650 1.83623 1.60476 0.96279 1.08317 0.90445 0.88172 0.89641 0.90205 0.87002 0.85382 0.72405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.93 10.89 127.77 1.39 4.32 15 2 N -0.51 -22.54 3.26 -543.63 -1.77 -24.31 15 3 C 0.33 17.14 7.27 133.23 0.97 18.10 15 4 C -0.51 -26.87 9.50 23.09 0.22 -26.65 15 5 H 0.08 4.35 7.46 -2.91 -0.02 4.32 15 6 C 0.04 2.26 5.52 85.29 0.47 2.73 15 7 N -0.82 -43.68 13.65 21.86 0.30 -43.39 15 8 Si 1.14 57.38 25.90 68.60 1.78 59.16 15 9 H -0.30 -14.03 7.11 99.48 0.71 -13.33 15 10 H -0.27 -14.23 6.76 99.48 0.67 -13.55 15 11 H -0.30 -15.42 7.11 99.48 0.71 -14.71 15 12 N -0.45 -24.43 7.52 -55.02 -0.41 -24.85 15 13 N -0.30 -15.05 11.62 -56.17 -0.65 -15.70 15 14 C 0.08 3.26 8.09 179.18 1.45 4.71 15 15 S 0.04 1.07 21.77 -56.49 -1.23 -0.16 15 16 C -0.02 -0.59 5.82 71.24 0.41 -0.17 15 17 C -0.03 -0.74 6.79 88.46 0.60 -0.14 15 18 N -0.28 -7.82 11.66 -50.85 -0.59 -8.41 15 19 N -0.30 -7.11 11.66 -60.75 -0.71 -7.82 15 20 C -0.04 -0.48 12.39 130.60 1.62 1.14 15 21 S 0.27 3.81 23.06 -56.49 -1.30 2.51 15 22 H 0.08 2.27 8.14 -2.39 -0.02 2.25 15 23 H 0.10 2.59 7.85 -2.39 -0.02 2.57 15 24 H 0.08 2.68 7.48 -2.39 -0.02 2.66 15 25 H 0.29 14.50 8.72 -92.71 -0.81 13.69 15 26 H 0.11 3.44 8.14 -2.39 -0.02 3.42 15 27 H 0.13 3.26 8.14 -2.40 -0.02 3.24 15 28 H 0.26 0.82 8.06 -2.91 -0.02 0.80 15 Total: -1.00 -71.24 281.33 3.67 -67.57 By element: Atomic # 1 Polarization: -9.78 SS G_CDS: 1.14 Total: -8.64 kcal Atomic # 6 Polarization: -3.10 SS G_CDS: 7.13 Total: 4.03 kcal Atomic # 7 Polarization: -120.63 SS G_CDS: -3.84 Total: -124.47 kcal Atomic # 14 Polarization: 57.38 SS G_CDS: 1.78 Total: 59.16 kcal Atomic # 16 Polarization: 4.88 SS G_CDS: -2.53 Total: 2.35 kcal Total: -71.24 3.67 -67.57 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001652820404.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.456 kcal (2) G-P(sol) polarization free energy of solvation -71.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.570 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds